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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jun 23;68(Pt 7):o2192. doi: 10.1107/S160053681202795X

N′-[(E)-1-(4-Bromo­phen­yl)ethyl­idene]-2-(2-methyl-4-nitro-1H-imidazol-1-yl)acetohydrazide

Hoong-Kun Fun a,*,, Ching Kheng Quah a,§, Priya V Frank b,c, N Damodara c, Balakrishna Kalluraya b
PMCID: PMC3393992  PMID: 22798857

Abstract

In the title compound, C14H14BrN5O3, the mean plane of the imidazole ring (r.m.s deviation = 0.004 Å) forms a dihedral angle of 58.13 (7)° with the benzene ring. In the crystal, mol­ecules are linked via N—H⋯O, C—H⋯O and C—H⋯N hydrogen bonds into a three-dimensional network. A short Br⋯Br contact of 3.4932 (2) Å also occurs.

Related literature  

For general background to and applications of imidazole derivatives, see: Priya & Kalluraya (2005); Krapcho & Turk (1966); Chu et al. (2004); Khalafi-Nezhad et al. (2005). For standard bond-length data, see: Allen et al. (1987). For the stability of the temperature controller used in the data collection, see Cosier & Glazer (1986).graphic file with name e-68-o2192-scheme1.jpg

Experimental  

Crystal data  

  • C14H14BrN5O3

  • M r = 380.21

  • Monoclinic, Inline graphic

  • a = 8.4176 (1) Å

  • b = 10.6541 (1) Å

  • c = 17.4933 (2) Å

  • β = 90.100 (1)°

  • V = 1568.83 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 2.64 mm−1

  • T = 100 K

  • 0.37 × 0.33 × 0.15 mm

Data collection  

  • Bruker SMART APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.441, T max = 0.701

  • 45099 measured reflections

  • 6320 independent reflections

  • 5026 reflections with I > 2σ(I)

  • R int = 0.040

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.032

  • wR(F 2) = 0.082

  • S = 1.02

  • 6320 reflections

  • 214 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.88 e Å−3

  • Δρmin = −0.66 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681202795X/rz2774sup1.cif

e-68-o2192-sup1.cif (25.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202795X/rz2774Isup2.hkl

e-68-o2192-Isup2.hkl (309.4KB, hkl)

Supplementary material file. DOI: 10.1107/S160053681202795X/rz2774Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H1N2⋯O1i 0.81 (2) 2.04 (2) 2.8318 (14) 166.6 (18)
C9—H9A⋯O3ii 0.99 2.31 3.1818 (16) 147
C9—H9B⋯N4iii 0.99 2.40 3.3462 (16) 160
C10—H10A⋯O2ii 0.95 2.56 3.4488 (16) 155

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors thank Universiti Sains Malaysia (USM) for the Research University Grant (No. 1001/PFIZIK/811160). CKQ also thanks USM for an Incentive Grant.

supplementary crystallographic information

Comment

The chemistry of imidazole derivatives has been the subject of much interest due to their importance in various applications and also due to their widespread potential as well as proven biological and pharmacological activities (Priya & Kalluraya, 2005). Various applications of imidazoles have been listed in the literature with functions as widely divergent as antidepressant agents (Krapcho & Turk, 1966), as a marker for imaging tumor hypoxia( Chu et al., 2004), and in antibacterial activity (Khalafi-Nezhad et al., 2005). In view of the obvious importance of imidazole derivatives as potential pharmacological agents, herein we report the crystal structure of the above imidazole derivative.

In the title molecule, Fig. 1, the mean plane of the imidazole ring (N3/N4/C10-C12, r.m.s deviation = 0.004 Å) forms a dihedral angle of 58.13 (7)° with the phenyl ring (C1-C6). Bond lengths (Allen et al., 1987) and angles are within normal ranges. A short Br1···Br1 contact of 3.4932 (2) Å also occurs. In the crystal (Fig. 2), molecules are linked via intermolecular N2–H1N2···O1, C9–H9A···O3, C9–H9B···N4 and C10–H10A···O2 hydrogen bonds (Table 1) into a three-dimensional network.

Experimental

The title compound was synthesized by refluxing a mixture of 2-(2-methyl-4-nitro-1H-imidazol-1-yl)acethydrazide (0.1 mol) and 1-(4-bromophenyl)ethanone (0.1 mol) in glacial acetic acid for 1 hour. After cooling the reaction mixture to room temperature and evaporation of the solvent under reduced pressure, the solid separated was filtered, washed with water and dried. The recrystallization of the sample was done using an ethanol-dioxane (1:1 v/v) mixture. The melting point of the compound was found to be 549 K. The slow evaporation of the ethanol-dioxane mixture of the compound gave crystals suitable for X-ray analysis.

Refinement

Atom H1N2 was located in a difference Fourier map and refined freely [N–H = 0.81 (2) Å]. All other hydrogen atoms were positioned geometrically and refined using a riding model with C–H = 0.95-0.99 Å and Uiso(H) = 1.2 or 1.5 Ueq(C). A rotating-group model was applied for the methyl groups.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound showing 50% probability displacement ellipsoids for non-H atoms.

Fig. 2.

Fig. 2.

The crystal structure of the title compound, viewed along the a axis. H atoms not involved in hydrogen bonds (dashed lines) have been omitted for clarity.

Crystal data

C14H14BrN5O3 F(000) = 768
Mr = 380.21 Dx = 1.610 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 9969 reflections
a = 8.4176 (1) Å θ = 2.3–33.5°
b = 10.6541 (1) Å µ = 2.64 mm1
c = 17.4933 (2) Å T = 100 K
β = 90.100 (1)° Block, yellow
V = 1568.83 (3) Å3 0.37 × 0.33 × 0.15 mm
Z = 4

Data collection

Bruker SMART APEXII CCD area-detector diffractometer 6320 independent reflections
Radiation source: fine-focus sealed tube 5026 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.040
φ and ω scans θmax = 33.9°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −13→13
Tmin = 0.441, Tmax = 0.701 k = −16→16
45099 measured reflections l = −27→27

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082 H atoms treated by a mixture of independent and constrained refinement
S = 1.02 w = 1/[σ2(Fo2) + (0.0423P)2 + 0.4612P] where P = (Fo2 + 2Fc2)/3
6320 reflections (Δ/σ)max = 0.001
214 parameters Δρmax = 0.88 e Å3
0 restraints Δρmin = −0.66 e Å3

Special details

Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 0.021322 (19) −0.359303 (13) 0.050226 (9) 0.03144 (5)
O1 0.45656 (12) 0.54105 (9) 0.08914 (5) 0.02360 (19)
O2 0.13283 (13) 0.85764 (9) 0.31753 (6) 0.0269 (2)
O3 −0.04787 (11) 0.73832 (11) 0.26628 (7) 0.0345 (3)
N1 0.33805 (12) 0.23194 (9) 0.05430 (6) 0.01687 (18)
N2 0.40021 (13) 0.34967 (10) 0.04122 (6) 0.01891 (19)
N3 0.31916 (11) 0.50038 (9) 0.22432 (6) 0.01478 (17)
N4 0.36372 (12) 0.68190 (10) 0.28408 (6) 0.01722 (18)
N5 0.09082 (13) 0.76031 (10) 0.28541 (7) 0.0215 (2)
C1 0.29424 (16) −0.06979 (12) −0.03559 (7) 0.0221 (2)
H1A 0.3658 −0.0588 −0.0770 0.026*
C2 0.22669 (16) −0.18701 (12) −0.02307 (8) 0.0241 (2)
H2A 0.2518 −0.2559 −0.0553 0.029*
C3 0.12217 (16) −0.20161 (12) 0.03723 (8) 0.0229 (2)
C4 0.08571 (16) −0.10281 (12) 0.08621 (7) 0.0212 (2)
H4A 0.0153 −0.1149 0.1280 0.025*
C5 0.15433 (14) 0.01392 (11) 0.07288 (7) 0.0184 (2)
H5A 0.1300 0.0822 0.1058 0.022*
C6 0.25865 (14) 0.03226 (11) 0.01173 (7) 0.0181 (2)
C7 0.32849 (15) 0.15744 (11) −0.00367 (7) 0.0182 (2)
C8 0.40582 (14) 0.43392 (11) 0.09867 (7) 0.0168 (2)
C9 0.35054 (14) 0.39082 (11) 0.17701 (7) 0.0163 (2)
H9A 0.2528 0.3399 0.1719 0.020*
H9B 0.4335 0.3382 0.2012 0.020*
C10 0.17458 (14) 0.55668 (11) 0.23059 (7) 0.0171 (2)
H10A 0.0746 0.5263 0.2134 0.021*
C11 0.20643 (14) 0.66705 (11) 0.26741 (7) 0.0172 (2)
C12 0.43050 (13) 0.57897 (11) 0.25673 (6) 0.01558 (19)
C13 0.38107 (18) 0.19047 (14) −0.08367 (7) 0.0267 (3)
H13A 0.3421 0.2744 −0.0969 0.040*
H13B 0.3378 0.1290 −0.1198 0.040*
H13C 0.4974 0.1894 −0.0862 0.040*
C14 0.60238 (15) 0.54790 (13) 0.26074 (8) 0.0226 (2)
H14A 0.6556 0.6059 0.2959 0.034*
H14B 0.6494 0.5557 0.2098 0.034*
H14C 0.6155 0.4616 0.2792 0.034*
H1N2 0.436 (2) 0.3704 (17) 0.0004 (12) 0.028 (5)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.03837 (9) 0.01604 (7) 0.03988 (9) −0.00786 (5) −0.01265 (6) 0.00296 (5)
O1 0.0347 (5) 0.0166 (4) 0.0195 (4) −0.0089 (4) 0.0077 (4) −0.0024 (3)
O2 0.0300 (5) 0.0167 (4) 0.0342 (5) 0.0039 (3) 0.0041 (4) −0.0044 (4)
O3 0.0162 (4) 0.0334 (6) 0.0537 (7) 0.0041 (4) 0.0052 (4) −0.0103 (5)
N1 0.0189 (4) 0.0138 (4) 0.0179 (4) −0.0020 (3) 0.0007 (3) −0.0014 (3)
N2 0.0244 (5) 0.0161 (4) 0.0162 (4) −0.0052 (4) 0.0044 (4) −0.0017 (4)
N3 0.0153 (4) 0.0130 (4) 0.0160 (4) −0.0008 (3) 0.0029 (3) −0.0008 (3)
N4 0.0176 (4) 0.0152 (4) 0.0189 (4) 0.0000 (3) 0.0009 (4) −0.0017 (3)
N5 0.0204 (5) 0.0181 (5) 0.0261 (5) 0.0030 (4) 0.0068 (4) 0.0003 (4)
C1 0.0245 (6) 0.0194 (5) 0.0222 (5) 0.0008 (4) −0.0012 (5) −0.0056 (4)
C2 0.0272 (6) 0.0159 (5) 0.0291 (6) 0.0019 (5) −0.0055 (5) −0.0065 (5)
C3 0.0255 (6) 0.0147 (5) 0.0284 (6) −0.0028 (4) −0.0095 (5) 0.0003 (4)
C4 0.0241 (6) 0.0183 (5) 0.0212 (5) −0.0036 (4) −0.0030 (4) 0.0009 (4)
C5 0.0213 (5) 0.0156 (5) 0.0183 (5) −0.0013 (4) −0.0020 (4) −0.0024 (4)
C6 0.0201 (5) 0.0149 (5) 0.0192 (5) −0.0007 (4) −0.0024 (4) −0.0030 (4)
C7 0.0200 (5) 0.0168 (5) 0.0176 (5) −0.0017 (4) 0.0007 (4) −0.0028 (4)
C8 0.0182 (5) 0.0154 (5) 0.0168 (5) −0.0018 (4) 0.0030 (4) −0.0012 (4)
C9 0.0199 (5) 0.0116 (4) 0.0175 (5) −0.0016 (4) 0.0035 (4) −0.0016 (4)
C10 0.0145 (5) 0.0167 (5) 0.0201 (5) −0.0011 (4) 0.0033 (4) 0.0007 (4)
C11 0.0172 (5) 0.0148 (5) 0.0197 (5) 0.0011 (4) 0.0040 (4) −0.0004 (4)
C12 0.0165 (5) 0.0140 (4) 0.0163 (5) −0.0002 (4) 0.0002 (4) −0.0004 (4)
C13 0.0371 (7) 0.0252 (6) 0.0178 (5) −0.0095 (5) 0.0034 (5) −0.0032 (5)
C14 0.0162 (5) 0.0221 (6) 0.0296 (6) 0.0026 (4) −0.0041 (5) −0.0036 (5)

Geometric parameters (Å, º)

Br1—C3 1.8962 (13) C3—C4 1.3919 (19)
O1—C8 1.2302 (14) C4—C5 1.3912 (17)
O2—N5 1.2310 (15) C4—H4A 0.9500
O3—N5 1.2363 (15) C5—C6 1.3989 (17)
N1—C7 1.2901 (15) C5—H5A 0.9500
N1—N2 1.3783 (14) C6—C7 1.4824 (17)
N2—C8 1.3483 (15) C7—C13 1.5102 (18)
N2—H1N2 0.81 (2) C8—C9 1.5190 (16)
N3—C10 1.3614 (15) C9—H9A 0.9900
N3—C12 1.3779 (15) C9—H9B 0.9900
N3—C9 1.4554 (15) C10—C11 1.3671 (17)
N4—C12 1.3223 (15) C10—H10A 0.9500
N4—C11 1.3644 (16) C12—C14 1.4857 (16)
N5—C11 1.4264 (15) C13—H13A 0.9800
C1—C2 1.3898 (19) C13—H13B 0.9800
C1—C6 1.3992 (17) C13—H13C 0.9800
C1—H1A 0.9500 C14—H14A 0.9800
C2—C3 1.383 (2) C14—H14B 0.9800
C2—H2A 0.9500 C14—H14C 0.9800
C7—N1—N2 116.91 (10) C6—C7—C13 119.67 (10)
C8—N2—N1 119.67 (10) O1—C8—N2 121.89 (11)
C8—N2—H1N2 117.7 (13) O1—C8—C9 120.65 (10)
N1—N2—H1N2 122.6 (13) N2—C8—C9 117.44 (10)
C10—N3—C12 107.86 (9) N3—C9—C8 109.07 (9)
C10—N3—C9 124.22 (10) N3—C9—H9A 109.9
C12—N3—C9 126.68 (10) C8—C9—H9A 109.9
C12—N4—C11 103.86 (10) N3—C9—H9B 109.9
O2—N5—O3 123.61 (11) C8—C9—H9B 109.9
O2—N5—C11 119.47 (11) H9A—C9—H9B 108.3
O3—N5—C11 116.91 (11) N3—C10—C11 104.02 (10)
C2—C1—C6 121.13 (12) N3—C10—H10A 128.0
C2—C1—H1A 119.4 C11—C10—H10A 128.0
C6—C1—H1A 119.4 N4—C11—C10 112.94 (10)
C3—C2—C1 118.82 (12) N4—C11—N5 122.29 (11)
C3—C2—H2A 120.6 C10—C11—N5 124.74 (11)
C1—C2—H2A 120.6 N4—C12—N3 111.32 (10)
C2—C3—C4 121.70 (12) N4—C12—C14 125.61 (11)
C2—C3—Br1 118.46 (10) N3—C12—C14 123.07 (10)
C4—C3—Br1 119.80 (11) C7—C13—H13A 109.5
C5—C4—C3 118.74 (12) C7—C13—H13B 109.5
C5—C4—H4A 120.6 H13A—C13—H13B 109.5
C3—C4—H4A 120.6 C7—C13—H13C 109.5
C4—C5—C6 120.96 (11) H13A—C13—H13C 109.5
C4—C5—H5A 119.5 H13B—C13—H13C 109.5
C6—C5—H5A 119.5 C12—C14—H14A 109.5
C5—C6—C1 118.63 (11) C12—C14—H14B 109.5
C5—C6—C7 120.95 (11) H14A—C14—H14B 109.5
C1—C6—C7 120.41 (11) C12—C14—H14C 109.5
N1—C7—C6 115.78 (11) H14A—C14—H14C 109.5
N1—C7—C13 124.54 (11) H14B—C14—H14C 109.5
C7—N1—N2—C8 176.66 (12) C12—N3—C9—C8 −73.37 (14)
C6—C1—C2—C3 0.25 (19) O1—C8—C9—N3 18.68 (16)
C1—C2—C3—C4 −1.2 (2) N2—C8—C9—N3 −162.77 (10)
C1—C2—C3—Br1 176.42 (10) C12—N3—C10—C11 −0.47 (13)
C2—C3—C4—C5 1.3 (2) C9—N3—C10—C11 −168.42 (10)
Br1—C3—C4—C5 −176.37 (9) C12—N4—C11—C10 0.27 (14)
C3—C4—C5—C6 −0.28 (19) C12—N4—C11—N5 −178.11 (11)
C4—C5—C6—C1 −0.66 (18) N3—C10—C11—N4 0.13 (14)
C4—C5—C6—C7 178.40 (11) N3—C10—C11—N5 178.47 (11)
C2—C1—C6—C5 0.68 (19) O2—N5—C11—N4 −0.47 (18)
C2—C1—C6—C7 −178.39 (12) O3—N5—C11—N4 178.49 (12)
N2—N1—C7—C6 −178.98 (10) O2—N5—C11—C10 −178.65 (12)
N2—N1—C7—C13 0.29 (18) O3—N5—C11—C10 0.30 (19)
C5—C6—C7—N1 24.91 (17) C11—N4—C12—N3 −0.58 (13)
C1—C6—C7—N1 −156.05 (12) C11—N4—C12—C14 −179.49 (12)
C5—C6—C7—C13 −154.40 (12) C10—N3—C12—N4 0.69 (13)
C1—C6—C7—C13 24.64 (18) C9—N3—C12—N4 168.26 (11)
N1—N2—C8—O1 −178.13 (11) C10—N3—C12—C14 179.63 (11)
N1—N2—C8—C9 3.34 (17) C9—N3—C12—C14 −12.80 (18)
C10—N3—C9—C8 92.28 (13)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—H1N2···O1i 0.81 (2) 2.04 (2) 2.8318 (14) 166.6 (18)
C9—H9A···O3ii 0.99 2.31 3.1818 (16) 147
C9—H9B···N4iii 0.99 2.40 3.3462 (16) 160
C10—H10A···O2ii 0.95 2.56 3.4488 (16) 155

Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x, y−1/2, −z+1/2; (iii) −x+1, y−1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: RZ2774).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Bruker (2009). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Chu, T., Hu, S., Wei, B., Wang, Y., Liu, X. & Wang, X. (2004). Bioorg. Med. Chem 14, 747–749. [DOI] [PubMed]
  4. Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107.
  5. Khalafi-Nezhad, A., Rad, M. N. S., Mohabatkar, H., Asrari, Z. & Hemmateenejad, B. (2005). Bioorg. Med. Chem 13, 1931–1938. [DOI] [PubMed]
  6. Krapcho, J. & Turk, C. F. (1966). J. Med. Chem 9, 191–195. [DOI] [PubMed]
  7. Priya, V. F. & Kalluraya, B. (2005). Indian J. Chem. Sect. B, 44, 1456–1459.
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  9. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681202795X/rz2774sup1.cif

e-68-o2192-sup1.cif (25.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202795X/rz2774Isup2.hkl

e-68-o2192-Isup2.hkl (309.4KB, hkl)

Supplementary material file. DOI: 10.1107/S160053681202795X/rz2774Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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