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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jun 30;68(Pt 7):o2262. doi: 10.1107/S1600536812028747

2-[(1H-Benzimidazol-2-yl)sulfan­yl]-1-phenyl­ethanone

Hatem A Abdel-Aziz a, Tze Shyang Chia b, Hoong-Kun Fun b,*,
PMCID: PMC3394045  PMID: 22798910

Abstract

The title compound, C15H12N2OS, adopts a twisted V-shape, with the S atom as the pivot. The benzimidazole ring system [maximum deviation = 0.015 (1) Å] makes a dihedral angle of 78.56 (7)° with the phenyl ring. The O atom of the ketone group is close to coplanar with its adjacent ring [O—C—C—C torsion angle = 11.0 (2)°]. In the crystal, mol­ecules are linked by N—H⋯N hydrogen bonds into an infinite chain along [001]. The crystal packing also features a C—H⋯π inter­action.

Related literature  

For a related structure. see: Abdel-Aziz et al. (2011). For the synthesis, see: D’Amico et al. (1964). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986). For standard bond lengths, see: Allen et al. (1987).graphic file with name e-68-o2262-scheme1.jpg

Experimental  

Crystal data  

  • C15H12N2OS

  • M r = 268.33

  • Monoclinic, Inline graphic

  • a = 14.7849 (13) Å

  • b = 9.2643 (8) Å

  • c = 9.7859 (8) Å

  • β = 106.792 (1)°

  • V = 1283.24 (19) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.24 mm−1

  • T = 100 K

  • 0.32 × 0.11 × 0.07 mm

Data collection  

  • Bruker APEX DUO CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.927, T max = 0.983

  • 13644 measured reflections

  • 3722 independent reflections

  • 3094 reflections with I > 2σ(I)’

  • R int = 0.027

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.041

  • wR(F 2) = 0.096

  • S = 1.05

  • 3722 reflections

  • 176 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.51 e Å−3

  • Δρmin = −0.41 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028747/hb6869sup1.cif

e-68-o2262-sup1.cif (22.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028747/hb6869Isup2.hkl

e-68-o2262-Isup2.hkl (182.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812028747/hb6869Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 is the centroid of the N1/N2/C1/C6/C7 ring.

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H1N2⋯N1i 0.880 (19) 1.95 (2) 2.8250 (16) 175.8 (18)
C4—H4ACg1ii 0.93 2.82 3.4175 (15) 123

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

HKF and TSC thank Universiti Sains Malaysia (USM) for the Research University Grant (1001/PFIZIK/811160). TSC also thanks the Malaysian Government and USM for the award of a research fellowship. The authors thank the Deanship of Scientific Research and the Research Center, College of Pharmacy, King Saud University.

supplementary crystallographic information

Comment

In continuation to our reports on the chemistry and the biological activity of benzimidazoles (Abdel-Aziz et al., 2011), we report herein the crystal structure of the title compound.

The asymmetric unit of the title compound is shown in Fig. 1. The molecule adopts a twisted V shape with S atom as the pivot, which is identical to a related structure (Abdel-Aziz et al., 2011). The benzimidazole ring system (N1/N2/C1–C7) is essentially planar [maximum deviation = 0.015 (1) Å at atom C1] and makes a dihedral angle of 78.56 (7)° with the terminal C10–C15 benzene ring. The ketone group (C9═O1) is almost coplanar with the C10–C15 benzene ring as indicated by the O1—C9—C10—C11 torsion angle of 11.0 (2)°. Bond lengths (Allen et al., 1987) and angles are within normal ranges.

In the crystal (Fig. 2), molecules are linked by N2—H1N2···N1 hydrogen bond into an infinite chain along the c-axis. The crystal packing is further stabilized by C—H···π interaction (Table 1), involving Cg1, which is the centroid of N1/N2/C1/C6/C7 ring.

Experimental

The title compound was prepared by the reaction of 1H-benzo[d]imidazole-2-thiol and 2-bromo-1-phenylethanone in ethanol in the presence of potassium hydroxide (D'Amico et al., 1964). Colourless needles were crystallised from ethanol solution.

Refinement

The atom H1N2 was located in a difference fourier map and refined freely [N2—H1N2 = 0.880 (19) Å]. The remaining H atoms were positioned geometrically [C—H = 0.93 and 0.97 Å] and refined using a riding model with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with 50% probability displacement ellipsoids.

Fig. 2.

Fig. 2.

The crystal packing of the title compound. The dashed lines represent the hydrogen bonds. For clarity sake, hydrogen atoms not involved in hydrogen bonding have been omitted.

Crystal data

C15H12N2OS F(000) = 560
Mr = 268.33 Dx = 1.389 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 5435 reflections
a = 14.7849 (13) Å θ = 2.6–30.0°
b = 9.2643 (8) Å µ = 0.24 mm1
c = 9.7859 (8) Å T = 100 K
β = 106.792 (1)° Needle, colourless
V = 1283.24 (19) Å3 0.32 × 0.11 × 0.07 mm
Z = 4

Data collection

Bruker APEX DUO CCD diffractometer 3722 independent reflections
Radiation source: fine-focus sealed tube 3094 reflections with I > 2σ(I)'
Graphite monochromator Rint = 0.027
φ and ω scans θmax = 30.0°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −20→20
Tmin = 0.927, Tmax = 0.983 k = −10→13
13644 measured reflections l = −13→13

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096 H atoms treated by a mixture of independent and constrained refinement
S = 1.05 w = 1/[σ2(Fo2) + (0.0361P)2 + 0.7649P] where P = (Fo2 + 2Fc2)/3
3722 reflections (Δ/σ)max = 0.001
176 parameters Δρmax = 0.51 e Å3
0 restraints Δρmin = −0.41 e Å3

Special details

Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.27768 (2) 0.54949 (4) 0.10069 (4) 0.02057 (9)
O1 0.12453 (8) 0.75548 (13) 0.11153 (13) 0.0336 (3)
N1 0.33134 (8) 0.80747 (12) 0.01048 (12) 0.0170 (2)
N2 0.34377 (8) 0.79475 (12) 0.24453 (12) 0.0159 (2)
C1 0.36703 (9) 0.93757 (14) 0.07565 (14) 0.0155 (2)
C2 0.39488 (9) 1.06192 (15) 0.01768 (15) 0.0195 (3)
H2A 0.3892 1.0686 −0.0793 0.023*
C3 0.43124 (10) 1.17483 (15) 0.10989 (15) 0.0209 (3)
H3A 0.4504 1.2587 0.0739 0.025*
C4 0.43994 (9) 1.16595 (15) 0.25666 (15) 0.0198 (3)
H4A 0.4649 1.2439 0.3154 0.024*
C5 0.41217 (9) 1.04368 (14) 0.31575 (14) 0.0179 (3)
H5A 0.4175 1.0378 0.4126 0.021*
C6 0.37587 (8) 0.93011 (13) 0.22273 (14) 0.0149 (2)
C7 0.31869 (9) 0.72789 (14) 0.11564 (14) 0.0163 (2)
C8 0.16524 (10) 0.57212 (15) −0.03317 (16) 0.0224 (3)
H8A 0.1767 0.6038 −0.1212 0.027*
H8B 0.1340 0.4790 −0.0513 0.027*
C9 0.09888 (10) 0.67930 (16) 0.00635 (16) 0.0229 (3)
C10 0.00060 (10) 0.69134 (16) −0.09324 (16) 0.0224 (3)
C11 −0.05419 (11) 0.80839 (17) −0.07551 (18) 0.0277 (3)
H11A −0.0292 0.8754 −0.0038 0.033*
C12 −0.14568 (12) 0.82596 (19) −0.1637 (2) 0.0335 (4)
H12A −0.1814 0.9051 −0.1520 0.040*
C13 −0.18359 (11) 0.7248 (2) −0.26939 (19) 0.0340 (4)
H13A −0.2448 0.7364 −0.3290 0.041*
C14 −0.13037 (11) 0.6066 (2) −0.28627 (18) 0.0327 (4)
H14A −0.1565 0.5380 −0.3559 0.039*
C15 −0.03793 (11) 0.58989 (18) −0.19947 (17) 0.0271 (3)
H15A −0.0020 0.5114 −0.2123 0.033*
H1N2 0.3370 (13) 0.761 (2) 0.325 (2) 0.030 (5)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.02627 (17) 0.01719 (15) 0.01866 (18) −0.00276 (12) 0.00714 (13) −0.00024 (13)
O1 0.0277 (5) 0.0396 (6) 0.0327 (7) −0.0016 (5) 0.0075 (5) −0.0181 (5)
N1 0.0216 (5) 0.0182 (5) 0.0112 (5) −0.0013 (4) 0.0048 (4) −0.0010 (4)
N2 0.0204 (5) 0.0178 (5) 0.0098 (5) −0.0002 (4) 0.0050 (4) 0.0009 (4)
C1 0.0172 (5) 0.0176 (6) 0.0114 (6) 0.0005 (4) 0.0036 (4) −0.0004 (5)
C2 0.0236 (6) 0.0214 (6) 0.0132 (6) −0.0005 (5) 0.0048 (5) 0.0026 (5)
C3 0.0249 (6) 0.0177 (6) 0.0199 (7) −0.0014 (5) 0.0062 (5) 0.0023 (5)
C4 0.0213 (6) 0.0187 (6) 0.0185 (7) −0.0007 (5) 0.0044 (5) −0.0042 (5)
C5 0.0205 (6) 0.0209 (6) 0.0116 (6) 0.0007 (5) 0.0037 (5) −0.0018 (5)
C6 0.0154 (5) 0.0165 (5) 0.0126 (6) 0.0012 (4) 0.0038 (4) 0.0011 (5)
C7 0.0182 (6) 0.0180 (6) 0.0128 (6) 0.0003 (5) 0.0046 (5) −0.0003 (5)
C8 0.0242 (6) 0.0234 (6) 0.0202 (7) −0.0050 (5) 0.0072 (5) −0.0067 (6)
C9 0.0242 (6) 0.0237 (6) 0.0222 (7) −0.0046 (5) 0.0093 (6) −0.0047 (6)
C10 0.0237 (6) 0.0253 (7) 0.0200 (7) −0.0053 (5) 0.0091 (5) 0.0006 (6)
C11 0.0300 (7) 0.0249 (7) 0.0291 (8) −0.0027 (6) 0.0101 (6) 0.0002 (6)
C12 0.0302 (8) 0.0341 (8) 0.0376 (10) 0.0035 (7) 0.0120 (7) 0.0092 (7)
C13 0.0247 (7) 0.0469 (10) 0.0290 (9) −0.0046 (7) 0.0056 (6) 0.0120 (8)
C14 0.0301 (7) 0.0440 (9) 0.0229 (8) −0.0120 (7) 0.0056 (6) −0.0025 (7)
C15 0.0271 (7) 0.0316 (8) 0.0233 (8) −0.0059 (6) 0.0084 (6) −0.0044 (6)

Geometric parameters (Å, º)

S1—C7 1.7519 (13) C5—H5A 0.9300
S1—C8 1.8070 (15) C8—C9 1.5222 (19)
O1—C9 1.2148 (18) C8—H8A 0.9700
N1—C7 1.3224 (17) C8—H8B 0.9700
N1—C1 1.3941 (16) C9—C10 1.502 (2)
N2—C7 1.3571 (17) C10—C11 1.394 (2)
N2—C6 1.3790 (16) C10—C15 1.395 (2)
N2—H1N2 0.880 (19) C11—C12 1.388 (2)
C1—C2 1.3977 (18) C11—H11A 0.9300
C1—C6 1.4088 (18) C12—C13 1.388 (3)
C2—C3 1.3846 (19) C12—H12A 0.9300
C2—H2A 0.9300 C13—C14 1.386 (3)
C3—C4 1.407 (2) C13—H13A 0.9300
C3—H3A 0.9300 C14—C15 1.394 (2)
C4—C5 1.3869 (19) C14—H14A 0.9300
C4—H4A 0.9300 C15—H15A 0.9300
C5—C6 1.3934 (18)
C7—S1—C8 100.07 (6) C9—C8—H8A 108.6
C7—N1—C1 104.24 (11) S1—C8—H8A 108.6
C7—N2—C6 106.56 (11) C9—C8—H8B 108.6
C7—N2—H1N2 126.9 (12) S1—C8—H8B 108.6
C6—N2—H1N2 126.3 (12) H8A—C8—H8B 107.6
N1—C1—C2 130.08 (12) O1—C9—C10 120.88 (13)
N1—C1—C6 109.64 (11) O1—C9—C8 121.87 (13)
C2—C1—C6 120.26 (12) C10—C9—C8 117.22 (12)
C3—C2—C1 117.56 (12) C11—C10—C15 119.34 (14)
C3—C2—H2A 121.2 C11—C10—C9 117.71 (13)
C1—C2—H2A 121.2 C15—C10—C9 122.94 (13)
C2—C3—C4 121.66 (12) C12—C11—C10 120.72 (15)
C2—C3—H3A 119.2 C12—C11—H11A 119.6
C4—C3—H3A 119.2 C10—C11—H11A 119.6
C5—C4—C3 121.51 (13) C11—C12—C13 119.69 (16)
C5—C4—H4A 119.2 C11—C12—H12A 120.2
C3—C4—H4A 119.2 C13—C12—H12A 120.2
C4—C5—C6 116.68 (12) C14—C13—C12 120.09 (15)
C4—C5—H5A 121.7 C14—C13—H13A 120.0
C6—C5—H5A 121.7 C12—C13—H13A 120.0
N2—C6—C5 132.10 (12) C13—C14—C15 120.36 (16)
N2—C6—C1 105.56 (11) C13—C14—H14A 119.8
C5—C6—C1 122.34 (12) C15—C14—H14A 119.8
N1—C7—N2 114.00 (12) C14—C15—C10 119.79 (15)
N1—C7—S1 125.75 (10) C14—C15—H15A 120.1
N2—C7—S1 120.22 (10) C10—C15—H15A 120.1
C9—C8—S1 114.65 (10)
C7—N1—C1—C2 179.02 (13) C6—N2—C7—S1 177.86 (9)
C7—N1—C1—C6 0.78 (14) C8—S1—C7—N1 −57.99 (13)
N1—C1—C2—C3 −177.79 (13) C8—S1—C7—N2 124.34 (11)
C6—C1—C2—C3 0.30 (19) C7—S1—C8—C9 −57.82 (11)
C1—C2—C3—C4 −0.1 (2) S1—C8—C9—O1 8.48 (19)
C2—C3—C4—C5 −0.2 (2) S1—C8—C9—C10 −173.67 (10)
C3—C4—C5—C6 0.38 (19) O1—C9—C10—C11 11.0 (2)
C7—N2—C6—C5 −178.49 (13) C8—C9—C10—C11 −166.86 (13)
C7—N2—C6—C1 0.55 (13) O1—C9—C10—C15 −167.78 (15)
C4—C5—C6—N2 178.68 (13) C8—C9—C10—C15 14.4 (2)
C4—C5—C6—C1 −0.22 (19) C15—C10—C11—C12 −1.0 (2)
N1—C1—C6—N2 −0.83 (14) C9—C10—C11—C12 −179.88 (14)
C2—C1—C6—N2 −179.28 (11) C10—C11—C12—C13 0.9 (2)
N1—C1—C6—C5 178.32 (11) C11—C12—C13—C14 0.3 (2)
C2—C1—C6—C5 −0.12 (19) C12—C13—C14—C15 −1.4 (2)
C1—N1—C7—N2 −0.44 (15) C13—C14—C15—C10 1.2 (2)
C1—N1—C7—S1 −178.24 (10) C11—C10—C15—C14 0.0 (2)
C6—N2—C7—N1 −0.07 (15) C9—C10—C15—C14 178.74 (14)

Hydrogen-bond geometry (Å, º)

Cg1 is the centroid of the N1/N2/C1/C6/C7 ring.

D—H···A D—H H···A D···A D—H···A
N2—H1N2···N1i 0.880 (19) 1.95 (2) 2.8250 (16) 175.8 (18)
C4—H4A···Cg1ii 0.93 2.82 3.4175 (15) 123

Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) −x+1, y+1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6869).

References

  1. Abdel-Aziz, H. A., Ng, S. W. & Tiekink, E. R. T. (2011). Acta Cryst. E67, o2639. [DOI] [PMC free article] [PubMed]
  2. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  3. Bruker (2009). SADABS, APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107.
  5. D’Amico, J. J., Campbell, R. H. & Guinn, E. C. (1964). J. Org. Chem. 29, 865–869.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028747/hb6869sup1.cif

e-68-o2262-sup1.cif (22.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028747/hb6869Isup2.hkl

e-68-o2262-Isup2.hkl (182.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812028747/hb6869Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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