Abstract
The title compound, C15H12N2OS, adopts a twisted V-shape, with the S atom as the pivot. The benzimidazole ring system [maximum deviation = 0.015 (1) Å] makes a dihedral angle of 78.56 (7)° with the phenyl ring. The O atom of the ketone group is close to coplanar with its adjacent ring [O—C—C—C torsion angle = 11.0 (2)°]. In the crystal, molecules are linked by N—H⋯N hydrogen bonds into an infinite chain along [001]. The crystal packing also features a C—H⋯π interaction.
Related literature
For a related structure. see: Abdel-Aziz et al. (2011 ▶). For the synthesis, see: D’Amico et al. (1964 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For standard bond lengths, see: Allen et al. (1987) ▶.
Experimental
Crystal data
C15H12N2OS
M r = 268.33
Monoclinic,
a = 14.7849 (13) Å
b = 9.2643 (8) Å
c = 9.7859 (8) Å
β = 106.792 (1)°
V = 1283.24 (19) Å3
Z = 4
Mo Kα radiation
μ = 0.24 mm−1
T = 100 K
0.32 × 0.11 × 0.07 mm
Data collection
Bruker APEX DUO CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.927, T max = 0.983
13644 measured reflections
3722 independent reflections
3094 reflections with I > 2σ(I)’
R int = 0.027
Refinement
R[F 2 > 2σ(F 2)] = 0.041
wR(F 2) = 0.096
S = 1.05
3722 reflections
176 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.51 e Å−3
Δρmin = −0.41 e Å−3
Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028747/hb6869sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028747/hb6869Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812028747/hb6869Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
Cg1 is the centroid of the N1/N2/C1/C6/C7 ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H1N2⋯N1i | 0.880 (19) | 1.95 (2) | 2.8250 (16) | 175.8 (18) |
| C4—H4A⋯Cg1ii | 0.93 | 2.82 | 3.4175 (15) | 123 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
HKF and TSC thank Universiti Sains Malaysia (USM) for the Research University Grant (1001/PFIZIK/811160). TSC also thanks the Malaysian Government and USM for the award of a research fellowship. The authors thank the Deanship of Scientific Research and the Research Center, College of Pharmacy, King Saud University.
supplementary crystallographic information
Comment
In continuation to our reports on the chemistry and the biological activity of benzimidazoles (Abdel-Aziz et al., 2011), we report herein the crystal structure of the title compound.
The asymmetric unit of the title compound is shown in Fig. 1. The molecule adopts a twisted V shape with S atom as the pivot, which is identical to a related structure (Abdel-Aziz et al., 2011). The benzimidazole ring system (N1/N2/C1–C7) is essentially planar [maximum deviation = 0.015 (1) Å at atom C1] and makes a dihedral angle of 78.56 (7)° with the terminal C10–C15 benzene ring. The ketone group (C9═O1) is almost coplanar with the C10–C15 benzene ring as indicated by the O1—C9—C10—C11 torsion angle of 11.0 (2)°. Bond lengths (Allen et al., 1987) and angles are within normal ranges.
In the crystal (Fig. 2), molecules are linked by N2—H1N2···N1 hydrogen bond into an infinite chain along the c-axis. The crystal packing is further stabilized by C—H···π interaction (Table 1), involving Cg1, which is the centroid of N1/N2/C1/C6/C7 ring.
Experimental
The title compound was prepared by the reaction of 1H-benzo[d]imidazole-2-thiol and 2-bromo-1-phenylethanone in ethanol in the presence of potassium hydroxide (D'Amico et al., 1964). Colourless needles were crystallised from ethanol solution.
Refinement
The atom H1N2 was located in a difference fourier map and refined freely [N2—H1N2 = 0.880 (19) Å]. The remaining H atoms were positioned geometrically [C—H = 0.93 and 0.97 Å] and refined using a riding model with Uiso(H) = 1.2Ueq(C).
Figures
Fig. 1.
The molecular structure of the title compound with 50% probability displacement ellipsoids.
Fig. 2.
The crystal packing of the title compound. The dashed lines represent the hydrogen bonds. For clarity sake, hydrogen atoms not involved in hydrogen bonding have been omitted.
Crystal data
| C15H12N2OS | F(000) = 560 |
| Mr = 268.33 | Dx = 1.389 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 5435 reflections |
| a = 14.7849 (13) Å | θ = 2.6–30.0° |
| b = 9.2643 (8) Å | µ = 0.24 mm−1 |
| c = 9.7859 (8) Å | T = 100 K |
| β = 106.792 (1)° | Needle, colourless |
| V = 1283.24 (19) Å3 | 0.32 × 0.11 × 0.07 mm |
| Z = 4 |
Data collection
| Bruker APEX DUO CCD diffractometer | 3722 independent reflections |
| Radiation source: fine-focus sealed tube | 3094 reflections with I > 2σ(I)' |
| Graphite monochromator | Rint = 0.027 |
| φ and ω scans | θmax = 30.0°, θmin = 1.4° |
| Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −20→20 |
| Tmin = 0.927, Tmax = 0.983 | k = −10→13 |
| 13644 measured reflections | l = −13→13 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.096 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.05 | w = 1/[σ2(Fo2) + (0.0361P)2 + 0.7649P] where P = (Fo2 + 2Fc2)/3 |
| 3722 reflections | (Δ/σ)max = 0.001 |
| 176 parameters | Δρmax = 0.51 e Å−3 |
| 0 restraints | Δρmin = −0.41 e Å−3 |
Special details
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.27768 (2) | 0.54949 (4) | 0.10069 (4) | 0.02057 (9) | |
| O1 | 0.12453 (8) | 0.75548 (13) | 0.11153 (13) | 0.0336 (3) | |
| N1 | 0.33134 (8) | 0.80747 (12) | 0.01048 (12) | 0.0170 (2) | |
| N2 | 0.34377 (8) | 0.79475 (12) | 0.24453 (12) | 0.0159 (2) | |
| C1 | 0.36703 (9) | 0.93757 (14) | 0.07565 (14) | 0.0155 (2) | |
| C2 | 0.39488 (9) | 1.06192 (15) | 0.01768 (15) | 0.0195 (3) | |
| H2A | 0.3892 | 1.0686 | −0.0793 | 0.023* | |
| C3 | 0.43124 (10) | 1.17483 (15) | 0.10989 (15) | 0.0209 (3) | |
| H3A | 0.4504 | 1.2587 | 0.0739 | 0.025* | |
| C4 | 0.43994 (9) | 1.16595 (15) | 0.25666 (15) | 0.0198 (3) | |
| H4A | 0.4649 | 1.2439 | 0.3154 | 0.024* | |
| C5 | 0.41217 (9) | 1.04368 (14) | 0.31575 (14) | 0.0179 (3) | |
| H5A | 0.4175 | 1.0378 | 0.4126 | 0.021* | |
| C6 | 0.37587 (8) | 0.93011 (13) | 0.22273 (14) | 0.0149 (2) | |
| C7 | 0.31869 (9) | 0.72789 (14) | 0.11564 (14) | 0.0163 (2) | |
| C8 | 0.16524 (10) | 0.57212 (15) | −0.03317 (16) | 0.0224 (3) | |
| H8A | 0.1767 | 0.6038 | −0.1212 | 0.027* | |
| H8B | 0.1340 | 0.4790 | −0.0513 | 0.027* | |
| C9 | 0.09888 (10) | 0.67930 (16) | 0.00635 (16) | 0.0229 (3) | |
| C10 | 0.00060 (10) | 0.69134 (16) | −0.09324 (16) | 0.0224 (3) | |
| C11 | −0.05419 (11) | 0.80839 (17) | −0.07551 (18) | 0.0277 (3) | |
| H11A | −0.0292 | 0.8754 | −0.0038 | 0.033* | |
| C12 | −0.14568 (12) | 0.82596 (19) | −0.1637 (2) | 0.0335 (4) | |
| H12A | −0.1814 | 0.9051 | −0.1520 | 0.040* | |
| C13 | −0.18359 (11) | 0.7248 (2) | −0.26939 (19) | 0.0340 (4) | |
| H13A | −0.2448 | 0.7364 | −0.3290 | 0.041* | |
| C14 | −0.13037 (11) | 0.6066 (2) | −0.28627 (18) | 0.0327 (4) | |
| H14A | −0.1565 | 0.5380 | −0.3559 | 0.039* | |
| C15 | −0.03793 (11) | 0.58989 (18) | −0.19947 (17) | 0.0271 (3) | |
| H15A | −0.0020 | 0.5114 | −0.2123 | 0.033* | |
| H1N2 | 0.3370 (13) | 0.761 (2) | 0.325 (2) | 0.030 (5)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.02627 (17) | 0.01719 (15) | 0.01866 (18) | −0.00276 (12) | 0.00714 (13) | −0.00024 (13) |
| O1 | 0.0277 (5) | 0.0396 (6) | 0.0327 (7) | −0.0016 (5) | 0.0075 (5) | −0.0181 (5) |
| N1 | 0.0216 (5) | 0.0182 (5) | 0.0112 (5) | −0.0013 (4) | 0.0048 (4) | −0.0010 (4) |
| N2 | 0.0204 (5) | 0.0178 (5) | 0.0098 (5) | −0.0002 (4) | 0.0050 (4) | 0.0009 (4) |
| C1 | 0.0172 (5) | 0.0176 (6) | 0.0114 (6) | 0.0005 (4) | 0.0036 (4) | −0.0004 (5) |
| C2 | 0.0236 (6) | 0.0214 (6) | 0.0132 (6) | −0.0005 (5) | 0.0048 (5) | 0.0026 (5) |
| C3 | 0.0249 (6) | 0.0177 (6) | 0.0199 (7) | −0.0014 (5) | 0.0062 (5) | 0.0023 (5) |
| C4 | 0.0213 (6) | 0.0187 (6) | 0.0185 (7) | −0.0007 (5) | 0.0044 (5) | −0.0042 (5) |
| C5 | 0.0205 (6) | 0.0209 (6) | 0.0116 (6) | 0.0007 (5) | 0.0037 (5) | −0.0018 (5) |
| C6 | 0.0154 (5) | 0.0165 (5) | 0.0126 (6) | 0.0012 (4) | 0.0038 (4) | 0.0011 (5) |
| C7 | 0.0182 (6) | 0.0180 (6) | 0.0128 (6) | 0.0003 (5) | 0.0046 (5) | −0.0003 (5) |
| C8 | 0.0242 (6) | 0.0234 (6) | 0.0202 (7) | −0.0050 (5) | 0.0072 (5) | −0.0067 (6) |
| C9 | 0.0242 (6) | 0.0237 (6) | 0.0222 (7) | −0.0046 (5) | 0.0093 (6) | −0.0047 (6) |
| C10 | 0.0237 (6) | 0.0253 (7) | 0.0200 (7) | −0.0053 (5) | 0.0091 (5) | 0.0006 (6) |
| C11 | 0.0300 (7) | 0.0249 (7) | 0.0291 (8) | −0.0027 (6) | 0.0101 (6) | 0.0002 (6) |
| C12 | 0.0302 (8) | 0.0341 (8) | 0.0376 (10) | 0.0035 (7) | 0.0120 (7) | 0.0092 (7) |
| C13 | 0.0247 (7) | 0.0469 (10) | 0.0290 (9) | −0.0046 (7) | 0.0056 (6) | 0.0120 (8) |
| C14 | 0.0301 (7) | 0.0440 (9) | 0.0229 (8) | −0.0120 (7) | 0.0056 (6) | −0.0025 (7) |
| C15 | 0.0271 (7) | 0.0316 (8) | 0.0233 (8) | −0.0059 (6) | 0.0084 (6) | −0.0044 (6) |
Geometric parameters (Å, º)
| S1—C7 | 1.7519 (13) | C5—H5A | 0.9300 |
| S1—C8 | 1.8070 (15) | C8—C9 | 1.5222 (19) |
| O1—C9 | 1.2148 (18) | C8—H8A | 0.9700 |
| N1—C7 | 1.3224 (17) | C8—H8B | 0.9700 |
| N1—C1 | 1.3941 (16) | C9—C10 | 1.502 (2) |
| N2—C7 | 1.3571 (17) | C10—C11 | 1.394 (2) |
| N2—C6 | 1.3790 (16) | C10—C15 | 1.395 (2) |
| N2—H1N2 | 0.880 (19) | C11—C12 | 1.388 (2) |
| C1—C2 | 1.3977 (18) | C11—H11A | 0.9300 |
| C1—C6 | 1.4088 (18) | C12—C13 | 1.388 (3) |
| C2—C3 | 1.3846 (19) | C12—H12A | 0.9300 |
| C2—H2A | 0.9300 | C13—C14 | 1.386 (3) |
| C3—C4 | 1.407 (2) | C13—H13A | 0.9300 |
| C3—H3A | 0.9300 | C14—C15 | 1.394 (2) |
| C4—C5 | 1.3869 (19) | C14—H14A | 0.9300 |
| C4—H4A | 0.9300 | C15—H15A | 0.9300 |
| C5—C6 | 1.3934 (18) | ||
| C7—S1—C8 | 100.07 (6) | C9—C8—H8A | 108.6 |
| C7—N1—C1 | 104.24 (11) | S1—C8—H8A | 108.6 |
| C7—N2—C6 | 106.56 (11) | C9—C8—H8B | 108.6 |
| C7—N2—H1N2 | 126.9 (12) | S1—C8—H8B | 108.6 |
| C6—N2—H1N2 | 126.3 (12) | H8A—C8—H8B | 107.6 |
| N1—C1—C2 | 130.08 (12) | O1—C9—C10 | 120.88 (13) |
| N1—C1—C6 | 109.64 (11) | O1—C9—C8 | 121.87 (13) |
| C2—C1—C6 | 120.26 (12) | C10—C9—C8 | 117.22 (12) |
| C3—C2—C1 | 117.56 (12) | C11—C10—C15 | 119.34 (14) |
| C3—C2—H2A | 121.2 | C11—C10—C9 | 117.71 (13) |
| C1—C2—H2A | 121.2 | C15—C10—C9 | 122.94 (13) |
| C2—C3—C4 | 121.66 (12) | C12—C11—C10 | 120.72 (15) |
| C2—C3—H3A | 119.2 | C12—C11—H11A | 119.6 |
| C4—C3—H3A | 119.2 | C10—C11—H11A | 119.6 |
| C5—C4—C3 | 121.51 (13) | C11—C12—C13 | 119.69 (16) |
| C5—C4—H4A | 119.2 | C11—C12—H12A | 120.2 |
| C3—C4—H4A | 119.2 | C13—C12—H12A | 120.2 |
| C4—C5—C6 | 116.68 (12) | C14—C13—C12 | 120.09 (15) |
| C4—C5—H5A | 121.7 | C14—C13—H13A | 120.0 |
| C6—C5—H5A | 121.7 | C12—C13—H13A | 120.0 |
| N2—C6—C5 | 132.10 (12) | C13—C14—C15 | 120.36 (16) |
| N2—C6—C1 | 105.56 (11) | C13—C14—H14A | 119.8 |
| C5—C6—C1 | 122.34 (12) | C15—C14—H14A | 119.8 |
| N1—C7—N2 | 114.00 (12) | C14—C15—C10 | 119.79 (15) |
| N1—C7—S1 | 125.75 (10) | C14—C15—H15A | 120.1 |
| N2—C7—S1 | 120.22 (10) | C10—C15—H15A | 120.1 |
| C9—C8—S1 | 114.65 (10) | ||
| C7—N1—C1—C2 | 179.02 (13) | C6—N2—C7—S1 | 177.86 (9) |
| C7—N1—C1—C6 | 0.78 (14) | C8—S1—C7—N1 | −57.99 (13) |
| N1—C1—C2—C3 | −177.79 (13) | C8—S1—C7—N2 | 124.34 (11) |
| C6—C1—C2—C3 | 0.30 (19) | C7—S1—C8—C9 | −57.82 (11) |
| C1—C2—C3—C4 | −0.1 (2) | S1—C8—C9—O1 | 8.48 (19) |
| C2—C3—C4—C5 | −0.2 (2) | S1—C8—C9—C10 | −173.67 (10) |
| C3—C4—C5—C6 | 0.38 (19) | O1—C9—C10—C11 | 11.0 (2) |
| C7—N2—C6—C5 | −178.49 (13) | C8—C9—C10—C11 | −166.86 (13) |
| C7—N2—C6—C1 | 0.55 (13) | O1—C9—C10—C15 | −167.78 (15) |
| C4—C5—C6—N2 | 178.68 (13) | C8—C9—C10—C15 | 14.4 (2) |
| C4—C5—C6—C1 | −0.22 (19) | C15—C10—C11—C12 | −1.0 (2) |
| N1—C1—C6—N2 | −0.83 (14) | C9—C10—C11—C12 | −179.88 (14) |
| C2—C1—C6—N2 | −179.28 (11) | C10—C11—C12—C13 | 0.9 (2) |
| N1—C1—C6—C5 | 178.32 (11) | C11—C12—C13—C14 | 0.3 (2) |
| C2—C1—C6—C5 | −0.12 (19) | C12—C13—C14—C15 | −1.4 (2) |
| C1—N1—C7—N2 | −0.44 (15) | C13—C14—C15—C10 | 1.2 (2) |
| C1—N1—C7—S1 | −178.24 (10) | C11—C10—C15—C14 | 0.0 (2) |
| C6—N2—C7—N1 | −0.07 (15) | C9—C10—C15—C14 | 178.74 (14) |
Hydrogen-bond geometry (Å, º)
Cg1 is the centroid of the N1/N2/C1/C6/C7 ring.
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H1N2···N1i | 0.880 (19) | 1.95 (2) | 2.8250 (16) | 175.8 (18) |
| C4—H4A···Cg1ii | 0.93 | 2.82 | 3.4175 (15) | 123 |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) −x+1, y+1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6869).
References
- Abdel-Aziz, H. A., Ng, S. W. & Tiekink, E. R. T. (2011). Acta Cryst. E67, o2639. [DOI] [PMC free article] [PubMed]
- Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Bruker (2009). SADABS, APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107.
- D’Amico, J. J., Campbell, R. H. & Guinn, E. C. (1964). J. Org. Chem. 29, 865–869.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028747/hb6869sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028747/hb6869Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812028747/hb6869Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


