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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jun 30;68(Pt 7):o2280. doi: 10.1107/S1600536812028966

3,3′-Diethyl-1,1′-(1,4-phenyl­ene­dimethyl­ene)diimidazol-3-ium bis­(hexa­fluoro­phosphate)

Rosenani A Haque a, S Fatimah Nasri a, Mohd Mustaqim Rosli b, Hoong-Kun Fun b,*,
PMCID: PMC3394059  PMID: 22798924

Abstract

In the title mol­ecular salt, C18H24N4 2+·2PF6 , the complete dication is generated by a crystallographic inversion centre. The central benzene ring makes a dihedral angle of 77.19 (9)° with each of the imidazole rings. In the crystal, C—H⋯F inter­actions link the cations and anions into layers lying parallel to the bc plane. The hexa­fluoro­phosphate anion is disordered over two sets of sites in a 0.520 (11):0.480 (11) ratio.

Related literature  

For the properties of imidzole derivates, see: Shargel et al. (2006). For related structures, see: Haque et al. (2010, 2011).graphic file with name e-68-o2280-scheme1.jpg

Experimental  

Crystal data  

  • C18H24N4 2+·2PF6

  • M r = 586.35

  • Triclinic, Inline graphic

  • a = 8.5441 (5) Å

  • b = 8.6018 (5) Å

  • c = 9.5626 (6) Å

  • α = 67.913 (1)°

  • β = 77.928 (1)°

  • γ = 67.837 (1)°

  • V = 601.25 (6) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 0.29 mm−1

  • T = 297 K

  • 0.28 × 0.25 × 0.12 mm

Data collection  

  • Bruker APEX DUO CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.925, T max = 0.966

  • 12274 measured reflections

  • 3996 independent reflections

  • 2968 reflections with I > 2σ(I)

  • R int = 0.018

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.053

  • wR(F 2) = 0.170

  • S = 1.04

  • 3996 reflections

  • 228 parameters

  • 21 restraints

  • H-atom parameters constrained

  • Δρmax = 0.38 e Å−3

  • Δρmin = −0.36 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812028966/hb6877sup1.cif

e-68-o2280-sup1.cif (24.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028966/hb6877Isup2.hkl

e-68-o2280-Isup2.hkl (195.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812028966/hb6877Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C3—H3A⋯F1i 0.93 2.49 3.408 (10) 170
C4—H4A⋯F3ii 0.93 2.48 3.369 (11) 160
C5—H5A⋯F6iii 0.93 2.32 3.211 (8) 159

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

RAH and SFN thank Universiti Sains Malaysia (USM) for the short-term grant (304/PKIMIA/6311123) and RU grants (1001/PKIMIA/811157), (1001/PKIMIA/813023). HKF thanks USM for the Research University Grant No. 1001/PFIZIK/811160.

supplementary crystallographic information

Comment

Substituted imidazole derivatives are valuable in the treatment of many systemic fungal infections (Shargel et al., 2006). Previously, we have reported crystal structures of para- xylyl linked bis-imidazolium salts with propyl (Haque et al., 2011) and benzyl (Haque et al., 2010) substitutions. In this report, we describe the crystal structure of a para-xylyl linked bis-benzimidazolium salt with ethyl substitutuents

All parameters in (I) are within normal ranges. The complete dication is generated by a crystallographic inversion centre. The central benzene ring (C7—C9/C7A—C9A) makes a dihedral angle of 77.19 (9)° with the imidazole rings (N1—N2/C3—C5 and N1A—N2A/C3A—C5A). The hexafluorophosphate anions are disordered over two sets of sites with the final refined occupancies of 0.52 (1):0.48 (1).

In the crystal, C3—H3A···F1i, C4—H4A···F3ii and C5—H5A···F6iii (Table 1) interactions link the molecules into layers lying parallel to the bc-plane.

Experimental

To a solution of 1,4-bis((1H-imidazol-1-yl)methyl)benzene (1.00 g, 0.004 mol) in 15 ml of acetonitrile, 1-iodoethane (1.31 g, 0.008 mol) was added. The mixture was refluxed at 363 K for 24 h. The resultant white precipitate was filtered, washed with fresh acetonitrile (2 × 5 ml) and converted directly to its hexafluorophosphate counterpart by metathesis reaction using KPF6 (1.67 g, 0.008 mol) in 40 ml of methanol/water. The white precipitates were collected, washed with fresh acetonitrile (2 × 3 ml) to give the product as a white solid (1.78 g, 67%). M.p 467–469 K. Colourless blocks were obtained by slow diffusion method of the salt solution by using diethyl ether and acetonitrile at room temperature.

Refinement

All H atoms attached to C atoms were fixed geometrically and refined as riding with C—H = 0.93–0.97 Å and Uiso(H) = 1.2Ueq(C) or 1.5Ueq(C) for methyl H atoms. A rotating group model was applied to the methyl group. The hexafluorophosphate anion is disordered over two sets of sites with refined occupancies of 0.52 (1):0.48 (1).

Figures

Fig. 1.

Fig. 1.

The molecular structure, showing 30% probability displacement ellipsoids. Hydrogen atoms are shown as spheres of arbitrary radius.

Fig. 2.

Fig. 2.

The crystal packing of (I). Dashed lines indicate hydrogen bonds. H atoms not involved in the hydrogen bond interactions have been omitted for clarity.

Crystal data

C18H24N42+·2PF6 Z = 1
Mr = 586.35 F(000) = 298
Triclinic, P1 Dx = 1.619 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 8.5441 (5) Å Cell parameters from 3921 reflections
b = 8.6018 (5) Å θ = 2.3–29.3°
c = 9.5626 (6) Å µ = 0.29 mm1
α = 67.913 (1)° T = 297 K
β = 77.928 (1)° Block, colourless
γ = 67.837 (1)° 0.28 × 0.25 × 0.12 mm
V = 601.25 (6) Å3

Data collection

Bruker APEX DUO CCD diffractometer 3996 independent reflections
Radiation source: fine-focus sealed tube 2968 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.018
φ and ω scans θmax = 31.7°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −12→12
Tmin = 0.925, Tmax = 0.966 k = −12→12
12274 measured reflections l = −14→13

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.170 H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.087P)2 + 0.1678P] where P = (Fo2 + 2Fc2)/3
3996 reflections (Δ/σ)max = 0.026
228 parameters Δρmax = 0.38 e Å3
21 restraints Δρmin = −0.36 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
P1 0.2804 (5) 0.8326 (6) 0.7615 (5) 0.0638 (15) 0.520 (11)
F1 0.3579 (13) 0.9624 (13) 0.7737 (9) 0.131 (3) 0.520 (11)
F2 0.4136 (13) 0.7509 (17) 0.6579 (12) 0.199 (7) 0.520 (11)
F3 0.2044 (14) 0.6984 (10) 0.7644 (13) 0.163 (4) 0.520 (11)
F4 0.1422 (6) 0.8696 (10) 0.8921 (5) 0.107 (3) 0.520 (11)
F5 0.3982 (12) 0.7149 (17) 0.8932 (9) 0.166 (5) 0.520 (11)
F6 0.1612 (11) 0.9775 (11) 0.6426 (9) 0.114 (3) 0.520 (11)
P1X 0.2841 (4) 0.8298 (4) 0.7654 (4) 0.0360 (7) 0.480 (11)
F1X 0.3854 (13) 0.9578 (14) 0.718 (2) 0.203 (6) 0.480 (11)
F2X 0.4179 (9) 0.7801 (15) 0.6381 (8) 0.125 (4) 0.480 (11)
F3X 0.1751 (10) 0.7065 (9) 0.8061 (13) 0.142 (5) 0.480 (11)
F4X 0.1575 (11) 0.9329 (18) 0.8653 (13) 0.176 (5) 0.480 (11)
F5X 0.3981 (10) 0.6706 (12) 0.8876 (10) 0.124 (3) 0.480 (11)
F6X 0.1650 (13) 0.9487 (15) 0.6319 (9) 0.123 (4) 0.480 (11)
N1 0.7726 (2) 0.9473 (2) 0.78904 (17) 0.0434 (3)
N2 0.80090 (18) 0.67771 (18) 0.81853 (15) 0.0376 (3)
C1 0.5791 (3) 1.2530 (3) 0.7237 (4) 0.0789 (8)
H1A 0.5718 1.3735 0.6648 0.118*
H1B 0.5405 1.2453 0.8271 0.118*
H1C 0.5094 1.2165 0.6841 0.118*
C2 0.7574 (3) 1.1356 (3) 0.7159 (3) 0.0580 (5)
H2A 0.8010 1.1559 0.6108 0.070*
H2B 0.8255 1.1650 0.7653 0.070*
C3 0.7587 (3) 0.8606 (3) 0.9407 (2) 0.0568 (5)
H3A 0.7410 0.9089 1.0171 0.068*
C4 0.7751 (3) 0.6920 (3) 0.9598 (2) 0.0512 (5)
H4A 0.7700 0.6025 1.0515 0.061*
C5 0.7975 (2) 0.8345 (2) 0.71706 (19) 0.0424 (4)
H5A 0.8106 0.8607 0.6126 0.051*
C6 0.8154 (3) 0.5168 (2) 0.78841 (19) 0.0460 (4)
H6A 0.7027 0.5143 0.7890 0.055*
H6B 0.8726 0.4127 0.8689 0.055*
C7 0.9118 (2) 0.5083 (2) 0.63878 (17) 0.0375 (3)
C8 0.8268 (2) 0.5812 (3) 0.5089 (2) 0.0513 (5)
H8A 0.7099 0.6362 0.5139 0.062*
C9 1.0854 (3) 0.4272 (3) 0.6285 (2) 0.0512 (5)
H9A 1.1440 0.3775 0.7151 0.061*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
P1 0.061 (2) 0.066 (2) 0.052 (2) −0.0193 (18) −0.0073 (16) −0.0066 (16)
F1 0.183 (8) 0.157 (6) 0.133 (5) −0.118 (5) 0.029 (4) −0.093 (5)
F2 0.131 (7) 0.242 (11) 0.180 (9) 0.076 (7) −0.016 (6) −0.158 (8)
F3 0.213 (9) 0.120 (5) 0.224 (8) −0.102 (5) −0.040 (7) −0.070 (6)
F4 0.060 (2) 0.168 (5) 0.049 (2) −0.027 (3) 0.0210 (15) −0.013 (3)
F5 0.090 (5) 0.284 (12) 0.084 (4) −0.030 (6) −0.052 (4) −0.026 (6)
F6 0.084 (4) 0.078 (3) 0.087 (5) 0.005 (2) 0.005 (3) 0.035 (3)
P1X 0.0345 (13) 0.0375 (13) 0.0373 (15) −0.0150 (10) 0.0042 (10) −0.0143 (11)
F1X 0.102 (5) 0.148 (7) 0.343 (16) −0.096 (5) −0.007 (7) −0.013 (8)
F2X 0.073 (4) 0.213 (9) 0.061 (3) −0.023 (5) 0.027 (3) −0.055 (4)
F3X 0.088 (3) 0.092 (4) 0.196 (8) −0.060 (3) −0.062 (4) 0.064 (5)
F4X 0.115 (5) 0.273 (10) 0.239 (9) −0.035 (6) 0.011 (5) −0.231 (9)
F5X 0.070 (4) 0.105 (4) 0.107 (5) −0.005 (3) −0.011 (3) 0.041 (3)
F6X 0.089 (5) 0.178 (9) 0.048 (3) −0.007 (5) −0.026 (3) −0.004 (4)
N1 0.0464 (8) 0.0408 (7) 0.0481 (8) −0.0170 (6) 0.0016 (6) −0.0202 (6)
N2 0.0450 (7) 0.0383 (7) 0.0311 (6) −0.0158 (5) 0.0033 (5) −0.0145 (5)
C1 0.0633 (15) 0.0511 (12) 0.114 (2) −0.0112 (11) −0.0112 (14) −0.0229 (14)
C2 0.0608 (12) 0.0401 (9) 0.0745 (14) −0.0204 (8) 0.0033 (10) −0.0211 (9)
C3 0.0789 (14) 0.0595 (12) 0.0443 (10) −0.0269 (10) 0.0003 (9) −0.0286 (9)
C4 0.0739 (13) 0.0520 (10) 0.0319 (8) −0.0240 (9) −0.0003 (8) −0.0170 (7)
C5 0.0519 (9) 0.0406 (8) 0.0356 (7) −0.0179 (7) 0.0035 (6) −0.0146 (6)
C6 0.0636 (11) 0.0412 (8) 0.0374 (8) −0.0244 (8) 0.0100 (7) −0.0177 (7)
C7 0.0481 (9) 0.0326 (7) 0.0328 (7) −0.0135 (6) 0.0019 (6) −0.0143 (6)
C8 0.0389 (9) 0.0648 (12) 0.0444 (9) −0.0058 (8) −0.0033 (7) −0.0231 (9)
C9 0.0506 (10) 0.0611 (11) 0.0360 (8) −0.0064 (8) −0.0097 (7) −0.0181 (8)

Geometric parameters (Å, º)

P1—F2 1.490 (7) C1—H1A 0.9600
P1—F3 1.513 (6) C1—H1B 0.9600
P1—F6 1.531 (7) C1—H1C 0.9600
P1—F1 1.545 (6) C2—H2A 0.9700
P1—F5 1.558 (7) C2—H2B 0.9700
P1—F4 1.566 (5) C3—C4 1.347 (3)
P1X—F4X 1.533 (6) C3—H3A 0.9300
P1X—F1X 1.532 (7) C4—H4A 0.9300
P1X—F2X 1.553 (6) C5—H5A 0.9300
P1X—F3X 1.557 (6) C6—C7 1.507 (2)
P1X—F5X 1.567 (6) C6—H6A 0.9700
P1X—F6X 1.577 (6) C6—H6B 0.9700
N1—C5 1.321 (2) C7—C9 1.381 (3)
N1—C3 1.362 (3) C7—C8 1.382 (2)
N1—C2 1.469 (2) C8—C9i 1.383 (2)
N2—C5 1.327 (2) C8—H8A 0.9300
N2—C4 1.367 (2) C9—C8i 1.383 (2)
N2—C6 1.473 (2) C9—H9A 0.9300
C1—C2 1.482 (3)
F2—P1—F3 82.7 (7) C2—C1—H1A 109.5
F2—P1—F6 98.2 (6) C2—C1—H1B 109.5
F3—P1—F6 90.4 (5) H1A—C1—H1B 109.5
F2—P1—F1 100.0 (7) C2—C1—H1C 109.5
F3—P1—F1 175.0 (6) H1A—C1—H1C 109.5
F6—P1—F1 93.3 (6) H1B—C1—H1C 109.5
F2—P1—F5 88.9 (6) N1—C2—C1 111.63 (19)
F3—P1—F5 98.9 (7) N1—C2—H2A 109.3
F6—P1—F5 169.0 (8) C1—C2—H2A 109.3
F1—P1—F5 77.1 (6) N1—C2—H2B 109.3
F2—P1—F4 165.7 (7) C1—C2—H2B 109.3
F3—P1—F4 86.3 (5) H2A—C2—H2B 108.0
F6—P1—F4 90.8 (5) C4—C3—N1 107.53 (16)
F1—P1—F4 90.4 (4) C4—C3—H3A 126.2
F5—P1—F4 83.8 (5) N1—C3—H3A 126.2
F4X—P1X—F1X 90.9 (6) C3—C4—N2 106.79 (17)
F4X—P1X—F2X 163.0 (8) C3—C4—H4A 126.6
F1X—P1X—F2X 74.1 (7) N2—C4—H4A 126.6
F4X—P1X—F3X 89.2 (5) N1—C5—N2 108.71 (15)
F1X—P1X—F3X 176.8 (6) N1—C5—H5A 125.6
F2X—P1X—F3X 105.3 (6) N2—C5—H5A 125.6
F4X—P1X—F5X 100.5 (7) N2—C6—C7 112.44 (14)
F1X—P1X—F5X 99.7 (6) N2—C6—H6A 109.1
F2X—P1X—F5X 90.0 (5) C7—C6—H6A 109.1
F3X—P1X—F5X 83.5 (5) N2—C6—H6B 109.1
F4X—P1X—F6X 88.6 (6) C7—C6—H6B 109.1
F1X—P1X—F6X 92.3 (7) H6A—C6—H6B 107.8
F2X—P1X—F6X 84.2 (6) C9—C7—C8 118.74 (15)
F3X—P1X—F6X 84.5 (5) C9—C7—C6 121.03 (16)
F5X—P1X—F6X 164.7 (7) C8—C7—C6 120.23 (17)
C5—N1—C3 108.48 (15) C9i—C8—C7 120.44 (17)
C5—N1—C2 125.15 (17) C9i—C8—H8A 119.8
C3—N1—C2 126.35 (17) C7—C8—H8A 119.8
C5—N2—C4 108.49 (15) C7—C9—C8i 120.82 (16)
C5—N2—C6 127.06 (14) C7—C9—H9A 119.6
C4—N2—C6 124.27 (15) C8i—C9—H9A 119.6
C5—N1—C2—C1 104.3 (3) C6—N2—C5—N1 176.08 (17)
C3—N1—C2—C1 −73.6 (3) C5—N2—C6—C7 29.1 (3)
C5—N1—C3—C4 −0.2 (3) C4—N2—C6—C7 −156.30 (18)
C2—N1—C3—C4 178.0 (2) N2—C6—C7—C9 90.2 (2)
N1—C3—C4—N2 0.6 (3) N2—C6—C7—C8 −90.3 (2)
C5—N2—C4—C3 −0.9 (2) C9—C7—C8—C9i −0.1 (3)
C6—N2—C4—C3 −176.35 (19) C6—C7—C8—C9i −179.61 (18)
C3—N1—C5—N2 −0.4 (2) C8—C7—C9—C8i 0.1 (3)
C2—N1—C5—N2 −178.59 (18) C6—C7—C9—C8i 179.61 (18)
C4—N2—C5—N1 0.8 (2)

Symmetry code: (i) −x+2, −y+1, −z+1.

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C3—H3A···F1ii 0.93 2.49 3.408 (10) 170
C4—H4A···F3iii 0.93 2.48 3.369 (11) 160
C5—H5A···F6iv 0.93 2.32 3.211 (8) 159

Symmetry codes: (ii) −x+1, −y+2, −z+2; (iii) −x+1, −y+1, −z+2; (iv) −x+1, −y+2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6877).

References

  1. Bruker (2009). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Haque, R. A., Nasri, S. F., Hemamalini, M. & Fun, H.-K. (2011). Acta Cryst. E67, o1931. [DOI] [PMC free article] [PubMed]
  3. Haque, R. A., Washeel, A., Nasri, S. F., Yeap, C. S. & Fun, H.-K. (2010). Acta Cryst. E66, o824–o825. [DOI] [PMC free article] [PubMed]
  4. Shargel, L., Mutnick, A. H., Souney, P. F. & Swanson L. N. (2006). Com. Pharm. Rev. 6, 930-986.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812028966/hb6877sup1.cif

e-68-o2280-sup1.cif (24.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028966/hb6877Isup2.hkl

e-68-o2280-Isup2.hkl (195.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812028966/hb6877Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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