Abstract
In the title compound, C11H8N2O2S, there is a twist in the molecule, with the dihedral angle between the five- and six-membered rings being 31.77 (9)°. The nitro group is slightly twisted out of the plane of the benzene ring to which it is attached [O—N—C—C torsion angle = 9.0 (3)°]. The S and N atoms are syn. In the crystal, supramolecular layers parallel to (-204) are formed by C—H⋯O and C—H⋯N interactions. These layers are connected into a three-dimensional architecture by π–π interactions occurring between centrosymmetrically related benzene rings [centroid–centroid distance = 3.6020 (11) Å].
Related literature
For background to 2-substituted thiophenes, see: Kleemann et al. (2006 ▶). For a related structure, see: Asiri et al. (2012 ▶).
Experimental
Crystal data
C11H8N2O2S
M r = 232.25
Monoclinic,
a = 9.2754 (5) Å
b = 11.9983 (9) Å
c = 18.4996 (13) Å
β = 92.772 (6)°
V = 2056.4 (2) Å3
Z = 8
Mo Kα radiation
μ = 0.30 mm−1
T = 100 K
0.25 × 0.15 × 0.05 mm
Data collection
Agilent SuperNova Dual diffractometer with an Atlas detector
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.692, T max = 1.000
8697 measured reflections
2377 independent reflections
1869 reflections with I > 2σ(I)
R int = 0.050
Refinement
R[F 2 > 2σ(F 2)] = 0.040
wR(F 2) = 0.111
S = 1.04
2377 reflections
145 parameters
H-atom parameters constrained
Δρmax = 0.29 e Å−3
Δρmin = −0.31 e Å−3
Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028346/bt5953sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028346/bt5953Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812028346/bt5953Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C1—H1⋯O2i | 0.95 | 2.50 | 3.412 (2) | 160 |
| C2—H2⋯N1ii | 0.95 | 2.62 | 3.556 (2) | 169 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors are grateful to King Abdulaziz University for providing research facilities. The authors also thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM.C/HIR/MOHE/SC/12).
supplementary crystallographic information
Comment
Among the various useful properties exhibited by thiophenes are their biological activities (Kleemann et al., 2006). In continuation of structural studies of thienyl derivatives (Asiri et al., 2012), herein the crystal structure determination of the title compound, (4-nitrophenyl)thiophene-2-ylmethylene-amine (I), is described.
In (I), Fig. 1, the conformation about the N1═C5 bond [1.283 (2) Å] is E. A twist in the molecule is evident as seen in the value of the dihedral angle of 31.77 (9)° between the five- and six-membered rings. The major deviation from a planar torsion angle is -37.0 (3)° for C5—N1—C6—C11 indicating that the most significant twist occurs around the N1—C6 bond. The nitro group is slightly inclined with respect to the plane of the benzene ring to which it is attached as seen in the O2—N2—C9—C8 torsion angle of 9.0 (3)°. The S and N atoms are syn.
In the crystal packing, supramolecular layers parallel to (-2 0 4) are formed by C—H···O and C—H···N interactions, Table 1, which lead to 22-membered {···HC2H···ONC4N}2 synthons (Fig 2). Layers aggregate to form a three-dimensional architecture by π—π interactions occurring between centrosymmetrically related benzene rings [inter-centroid distance = 3.6020 (11) Å for symmetry operation 1 - x, 1 - y, 1 - z], Fig. 3.
Experimental
A mixture of thiophen-2-carboxaldehyde (1.1 g, 0.01 M) and p-nitroaniline (1.4 g, 0.0 1M) in ethanol (10 ml) was heated on a water bath for 30 min, the solid which separated out was filtered, dried and recrystallized from ethanol as yellow prisms; M. pt: 375–376 K. Yield: 96%.
Refinement
Carbon-bound H-atoms were placed in calculated positions [C—H = 0.95 Å, Uiso(H) = 1.2Ueq(C)] and were included in the refinement in the riding model approximation.
Figures
Fig. 1.
The molecular structure of (I) showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level.
Fig. 2.
A view of the supramolecular layer in the (-2 0 4) plane in (I) mediated by C—H···O and C—H···N interactions shown as orange and blue dashed lines, respectively.
Fig. 3.
A view in projection down the b axis of the unit-cell contents of (I), showing the stacking of supramolecular layers. The C—H···O, C—H···N and C—H—π interactions are shown as orange, blue and purple dashed lines, respectively.
Crystal data
| C11H8N2O2S | F(000) = 960 |
| Mr = 232.25 | Dx = 1.500 Mg m−3 |
| Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -C 2yc | Cell parameters from 2057 reflections |
| a = 9.2754 (5) Å | θ = 2.8–27.5° |
| b = 11.9983 (9) Å | µ = 0.30 mm−1 |
| c = 18.4996 (13) Å | T = 100 K |
| β = 92.772 (6)° | Prism, yellow |
| V = 2056.4 (2) Å3 | 0.25 × 0.15 × 0.05 mm |
| Z = 8 |
Data collection
| Agilent SuperNova Dual diffractometer with an Atlas detector | 2377 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 1869 reflections with I > 2σ(I) |
| Mirror monochromator | Rint = 0.050 |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 27.6°, θmin = 2.8° |
| ω scan | h = −11→12 |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012) | k = −13→15 |
| Tmin = 0.692, Tmax = 1.000 | l = −22→24 |
| 8697 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.111 | H-atom parameters constrained |
| S = 1.04 | w = 1/[σ2(Fo2) + (0.049P)2 + 1.4742P] where P = (Fo2 + 2Fc2)/3 |
| 2377 reflections | (Δ/σ)max < 0.001 |
| 145 parameters | Δρmax = 0.29 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.22121 (5) | 0.35279 (4) | 0.24739 (3) | 0.01985 (16) | |
| O1 | 0.94206 (15) | 0.49221 (12) | 0.60866 (8) | 0.0287 (4) | |
| O2 | 0.92261 (17) | 0.65565 (13) | 0.55892 (8) | 0.0330 (4) | |
| N1 | 0.45609 (16) | 0.40163 (13) | 0.36388 (8) | 0.0172 (3) | |
| N2 | 0.88841 (17) | 0.55649 (14) | 0.56311 (9) | 0.0213 (4) | |
| C1 | 0.1448 (2) | 0.24635 (16) | 0.19692 (10) | 0.0216 (4) | |
| H1 | 0.0693 | 0.2567 | 0.1610 | 0.026* | |
| C2 | 0.2041 (2) | 0.14558 (16) | 0.21402 (10) | 0.0191 (4) | |
| H2 | 0.1742 | 0.0776 | 0.1916 | 0.023* | |
| C3 | 0.3151 (2) | 0.15307 (15) | 0.26874 (10) | 0.0178 (4) | |
| H3 | 0.3687 | 0.0909 | 0.2871 | 0.021* | |
| C4 | 0.33686 (19) | 0.26104 (15) | 0.29257 (10) | 0.0165 (4) | |
| C5 | 0.44640 (19) | 0.29889 (16) | 0.34505 (10) | 0.0168 (4) | |
| H5 | 0.5128 | 0.2465 | 0.3661 | 0.020* | |
| C6 | 0.56731 (19) | 0.43424 (15) | 0.41452 (10) | 0.0156 (4) | |
| C7 | 0.6258 (2) | 0.54040 (16) | 0.40547 (10) | 0.0186 (4) | |
| H7 | 0.5925 | 0.5852 | 0.3658 | 0.022* | |
| C8 | 0.7316 (2) | 0.58087 (16) | 0.45373 (10) | 0.0195 (4) | |
| H8 | 0.7716 | 0.6530 | 0.4477 | 0.023* | |
| C9 | 0.77767 (19) | 0.51350 (16) | 0.51104 (9) | 0.0172 (4) | |
| C10 | 0.7220 (2) | 0.40827 (16) | 0.52155 (10) | 0.0186 (4) | |
| H10 | 0.7565 | 0.3637 | 0.5612 | 0.022* | |
| C11 | 0.6151 (2) | 0.36890 (16) | 0.47345 (10) | 0.0190 (4) | |
| H11 | 0.5742 | 0.2974 | 0.4805 | 0.023* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0209 (3) | 0.0158 (3) | 0.0223 (3) | 0.00164 (19) | −0.00515 (19) | −0.00144 (18) |
| O1 | 0.0258 (8) | 0.0328 (9) | 0.0264 (8) | 0.0027 (7) | −0.0107 (6) | 0.0029 (6) |
| O2 | 0.0361 (9) | 0.0281 (9) | 0.0334 (9) | −0.0135 (7) | −0.0118 (7) | 0.0019 (7) |
| N1 | 0.0164 (8) | 0.0180 (8) | 0.0169 (8) | −0.0001 (6) | −0.0022 (6) | −0.0005 (6) |
| N2 | 0.0182 (8) | 0.0258 (10) | 0.0196 (9) | −0.0014 (7) | −0.0017 (7) | −0.0019 (7) |
| C1 | 0.0191 (10) | 0.0246 (11) | 0.0203 (10) | −0.0014 (8) | −0.0060 (8) | −0.0028 (8) |
| C2 | 0.0213 (10) | 0.0182 (10) | 0.0175 (10) | −0.0024 (8) | −0.0015 (8) | −0.0021 (7) |
| C3 | 0.0190 (9) | 0.0158 (10) | 0.0183 (9) | 0.0004 (7) | −0.0019 (7) | 0.0011 (7) |
| C4 | 0.0160 (9) | 0.0173 (9) | 0.0160 (9) | 0.0010 (7) | −0.0002 (7) | 0.0003 (7) |
| C5 | 0.0161 (9) | 0.0183 (10) | 0.0161 (9) | 0.0014 (8) | −0.0002 (7) | 0.0023 (7) |
| C6 | 0.0133 (8) | 0.0174 (9) | 0.0160 (9) | 0.0012 (7) | −0.0003 (7) | −0.0033 (7) |
| C7 | 0.0176 (9) | 0.0203 (10) | 0.0176 (9) | 0.0011 (8) | −0.0008 (7) | 0.0040 (7) |
| C8 | 0.0189 (9) | 0.0181 (10) | 0.0214 (10) | −0.0040 (8) | −0.0003 (8) | 0.0006 (7) |
| C9 | 0.0124 (9) | 0.0243 (10) | 0.0148 (9) | −0.0006 (7) | −0.0009 (7) | −0.0035 (7) |
| C10 | 0.0202 (9) | 0.0190 (10) | 0.0165 (9) | 0.0016 (8) | −0.0014 (7) | 0.0008 (7) |
| C11 | 0.0220 (10) | 0.0165 (9) | 0.0184 (10) | −0.0003 (8) | −0.0001 (8) | −0.0005 (7) |
Geometric parameters (Å, º)
| S1—C1 | 1.7150 (19) | C4—C5 | 1.444 (2) |
| S1—C4 | 1.7246 (18) | C5—H5 | 0.9500 |
| O1—N2 | 1.230 (2) | C6—C11 | 1.398 (3) |
| O2—N2 | 1.235 (2) | C6—C7 | 1.397 (3) |
| N1—C5 | 1.283 (2) | C7—C8 | 1.382 (3) |
| N1—C6 | 1.415 (2) | C7—H7 | 0.9500 |
| N2—C9 | 1.467 (2) | C8—C9 | 1.384 (3) |
| C1—C2 | 1.359 (3) | C8—H8 | 0.9500 |
| C1—H1 | 0.9500 | C9—C10 | 1.382 (3) |
| C2—C3 | 1.411 (3) | C10—C11 | 1.383 (3) |
| C2—H2 | 0.9500 | C10—H10 | 0.9500 |
| C3—C4 | 1.380 (3) | C11—H11 | 0.9500 |
| C3—H3 | 0.9500 | ||
| C1—S1—C4 | 91.13 (9) | C4—C5—H5 | 119.3 |
| C5—N1—C6 | 119.00 (16) | C11—C6—C7 | 119.63 (17) |
| O1—N2—O2 | 123.41 (16) | C11—C6—N1 | 123.71 (17) |
| O1—N2—C9 | 118.47 (16) | C7—C6—N1 | 116.58 (16) |
| O2—N2—C9 | 118.12 (16) | C8—C7—C6 | 120.68 (17) |
| C2—C1—S1 | 112.55 (15) | C8—C7—H7 | 119.7 |
| C2—C1—H1 | 123.7 | C6—C7—H7 | 119.7 |
| S1—C1—H1 | 123.7 | C7—C8—C9 | 118.21 (17) |
| C1—C2—C3 | 112.54 (17) | C7—C8—H8 | 120.9 |
| C1—C2—H2 | 123.7 | C9—C8—H8 | 120.9 |
| C3—C2—H2 | 123.7 | C10—C9—C8 | 122.53 (17) |
| C4—C3—C2 | 112.28 (17) | C10—C9—N2 | 118.91 (16) |
| C4—C3—H3 | 123.9 | C8—C9—N2 | 118.56 (17) |
| C2—C3—H3 | 123.9 | C9—C10—C11 | 118.88 (18) |
| C3—C4—C5 | 126.67 (18) | C9—C10—H10 | 120.6 |
| C3—C4—S1 | 111.50 (14) | C11—C10—H10 | 120.6 |
| C5—C4—S1 | 121.73 (14) | C10—C11—C6 | 120.05 (18) |
| N1—C5—C4 | 121.49 (17) | C10—C11—H11 | 120.0 |
| N1—C5—H5 | 119.3 | C6—C11—H11 | 120.0 |
| C4—S1—C1—C2 | 0.33 (16) | N1—C6—C7—C8 | 177.85 (16) |
| S1—C1—C2—C3 | −0.5 (2) | C6—C7—C8—C9 | 0.0 (3) |
| C1—C2—C3—C4 | 0.5 (2) | C7—C8—C9—C10 | −0.1 (3) |
| C2—C3—C4—C5 | −176.49 (17) | C7—C8—C9—N2 | −179.10 (16) |
| C2—C3—C4—S1 | −0.2 (2) | O1—N2—C9—C10 | 9.7 (3) |
| C1—S1—C4—C3 | −0.06 (15) | O2—N2—C9—C10 | −170.11 (18) |
| C1—S1—C4—C5 | 176.43 (16) | O1—N2—C9—C8 | −171.17 (17) |
| C6—N1—C5—C4 | −178.81 (16) | O2—N2—C9—C8 | 9.0 (3) |
| C3—C4—C5—N1 | −179.32 (19) | C8—C9—C10—C11 | −0.6 (3) |
| S1—C4—C5—N1 | 4.7 (3) | N2—C9—C10—C11 | 178.44 (16) |
| C5—N1—C6—C11 | −37.0 (3) | C9—C10—C11—C6 | 1.3 (3) |
| C5—N1—C6—C7 | 146.04 (18) | C7—C6—C11—C10 | −1.4 (3) |
| C11—C6—C7—C8 | 0.8 (3) | N1—C6—C11—C10 | −178.30 (17) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C1—H1···O2i | 0.95 | 2.50 | 3.412 (2) | 160 |
| C2—H2···N1ii | 0.95 | 2.62 | 3.556 (2) | 169 |
Symmetry codes: (i) x−1, −y+1, z−1/2; (ii) −x+1/2, y−1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5953).
References
- Agilent (2012). CrysAlis PRO Agilent Technologies, Yarnton, Oxfordshire, England.
- Asiri, A. M., Faidallah, H. M., Khan, K. A., Ng, S. W. & Tiekink, E. R. T. (2012). Acta Cryst. E68, o1026. [DOI] [PMC free article] [PubMed]
- Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
- Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
- Kleemann, A., Engel, J. B., Kutscher, B. & Reichert, D. (2006). In Pharmaceutical Substances New York, Stuttgart: Georg Thieme Verlag.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028346/bt5953sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028346/bt5953Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812028346/bt5953Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report



