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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jun 30;68(Pt 7):o2299. doi: 10.1107/S1600536812029170

2-Hy­droxy-2-trifluoro­methyl-3,4-dihydro-2H-1-benzopyran-4-one

Abdullah M Asiri a,b,, Hassan M Faidallah b, Khalid A Alamry a,b, Seik Weng Ng c, Edward R T Tiekink c,*
PMCID: PMC3394075  PMID: 22798940

Abstract

The heterocyclic ring in the title compound, C10H7F3O3, has a half-boat conformation with the hy­droxy-bearing C atom lying 0.595 (3) Å out of the plane of the five remaining atoms (r.m.s. deviation = 0.022 Å) in the direction of the hy­droxy O atom. Linear supra­molecular chains along the a axis, sustained by O—H⋯O hydrogen bonds between the hy­droxy H and ketone O atoms, feature in the crystal packing. These chains are connected into a three-dimensional architecture by C—H⋯O and C—H⋯F contacts.

Related literature  

For an example of an anti­cipated product formed between the reaction of bis­(ethyl­idene)ethane-1,2-diamine with an anhydride, see: Asiri et al. (2011). For the crystal structure of a related compound, see: Wang et al. (1999).graphic file with name e-68-o2299-scheme1.jpg

Experimental  

Crystal data  

  • C10H7F3O3

  • M r = 232.16

  • Triclinic, Inline graphic

  • a = 5.9516 (5) Å

  • b = 8.5188 (7) Å

  • c = 10.2036 (8) Å

  • α = 66.985 (8)°

  • β = 80.380 (7)°

  • γ = 78.311 (7)°

  • V = 464.05 (7) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.16 mm−1

  • T = 100 K

  • 0.30 × 0.30 × 0.15 mm

Data collection  

  • Agilent SuperNova Dual diffractometer with an Atlas detector

  • Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012) T min = 0.528, T max = 1.000

  • 3161 measured reflections

  • 2126 independent reflections

  • 1665 reflections with I > 2σ(I)

  • R int = 0.027

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.051

  • wR(F 2) = 0.171

  • S = 1.06

  • 2126 reflections

  • 149 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.58 e Å−3

  • Δρmin = −0.30 e Å−3

Data collection: CrysAlis PRO (Agilent, 2012); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812029170/su2468sup1.cif

e-68-o2299-sup1.cif (16.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029170/su2468Isup2.hkl

e-68-o2299-Isup2.hkl (104.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812029170/su2468Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O3—H3o⋯O2i 0.86 (3) 1.97 (3) 2.768 (2) 154 (3)
C2—H2⋯O1ii 0.95 2.60 3.444 (3) 148
C3—H3⋯F3iii 0.95 2.52 3.338 (3) 144
C8—H8A⋯F1iv 0.99 2.51 3.033 (2) 113
C8—H8B⋯O3v 0.99 2.56 3.547 (2) 175

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic.

Acknowledgments

The authors are grateful to King Abdulaziz University for providing research facilities. We also thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM.C/HIR/MOHE/SC/12).

supplementary crystallographic information

Comment

The title compound, (I), was isolated unexpectedly from a reaction between N,N'-bis[1-(p-hydroxyhenyl)ethylidene]ethane-1,2-diamine and trifluoroacetic anhydride to yield the anticipated di-substituted ethylenediamine derivative in accord with literature precedents (Asiri et al., 2011).

In (I), Fig. 1, the heterocyclic ring has a half-boat conformation with the hydroxy bearing C9 atom lying 0.595 (3) Å out of the plane of the five remaining atoms [r.m.s. deviation = 0.022 Å] in the direction of the hydroxy O3 atom. A similar conformation was found in a literature precedent with phenyl rather than CF3 and with OH and two OMe substituents on the benzene ring (Wang et al., 1999).

In the crystal, linear supramolecular chains sustained by O—H···O hydrogen bonds between the hydroxy H and ketone-O atoms (Table 1), are formed along the a axis (Fig. 2). These are connected into a three-dimensional architecture by C—H···O and C—H···F contacts (Fig. 3 and Table 1).

Experimental

A mixture of N,N'-bis[1-(p-hydroxyhenyl)ethylidene]ethane-1,2-diamine (0.01 M) in THF (30 ml) and trifluoroacetic anhydride (0.025 M) was refluxed for 2 h. The solid which separated on cooling was recrystallized from its ethanol solution. M. pt: 477–478 K. Yield: 70%.

Refinement

Carbon-bound H-atoms were placed in calculated positions [C—H = 0.95–0.99 Å, Uiso(H) = 1.2Ueq(C)] and were included in the refinement in the riding model approximation. The oxygen-bound H-atom was located in a difference Fourier map and was refined freely.

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level.

Fig. 2.

Fig. 2.

A view of the linear supramolecular chain along the a axis in (I) mediated by O—H···O hydrogen bonds shown as orange dashed lines.

Fig. 3.

Fig. 3.

A view in projection along the b axis of the unit-cell contents of (I). The O—H···O, C—H···O and C—H···F interactions are shown as orange, blue and purple dashed lines, respectively.

Crystal data

C10H7F3O3 Z = 2
Mr = 232.16 F(000) = 236
Triclinic, P1 Dx = 1.661 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 5.9516 (5) Å Cell parameters from 1358 reflections
b = 8.5188 (7) Å θ = 2.6–27.5°
c = 10.2036 (8) Å µ = 0.16 mm1
α = 66.985 (8)° T = 100 K
β = 80.380 (7)° Block, colourless
γ = 78.311 (7)° 0.30 × 0.30 × 0.15 mm
V = 464.05 (7) Å3

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector 2126 independent reflections
Radiation source: SuperNova (Mo) X-ray Source 1665 reflections with I > 2σ(I)
Mirror monochromator Rint = 0.027
Detector resolution: 10.4041 pixels mm-1 θmax = 27.6°, θmin = 2.6°
ω scan h = −7→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012) k = −8→11
Tmin = 0.528, Tmax = 1.000 l = −12→13
3161 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.171 H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
2126 reflections (Δ/σ)max = 0.001
149 parameters Δρmax = 0.58 e Å3
0 restraints Δρmin = −0.30 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
F1 1.0703 (2) 0.18377 (19) 0.58363 (13) 0.0304 (4)
F2 0.8148 (2) 0.01895 (17) 0.63198 (13) 0.0313 (4)
F3 0.7818 (2) 0.26448 (18) 0.45820 (12) 0.0319 (4)
O1 0.7796 (2) 0.16833 (18) 0.82675 (13) 0.0178 (3)
O2 0.1156 (2) 0.4181 (2) 0.79358 (15) 0.0235 (4)
O3 0.7560 (3) 0.43915 (19) 0.64399 (14) 0.0209 (4)
C1 0.6584 (3) 0.2102 (3) 0.93909 (19) 0.0175 (4)
C2 0.7742 (4) 0.1650 (3) 1.0596 (2) 0.0211 (5)
H2 0.9293 0.1085 1.0621 0.025*
C3 0.6602 (4) 0.2034 (3) 1.1755 (2) 0.0232 (5)
H3 0.7378 0.1719 1.2583 0.028*
C4 0.4331 (4) 0.2877 (3) 1.1729 (2) 0.0237 (5)
H4 0.3574 0.3141 1.2531 0.028*
C5 0.3191 (3) 0.3325 (3) 1.0531 (2) 0.0213 (5)
H5 0.1641 0.3892 1.0514 0.026*
C6 0.4307 (3) 0.2950 (3) 0.93380 (19) 0.0175 (4)
C7 0.3132 (3) 0.3418 (3) 0.8052 (2) 0.0188 (4)
C8 0.4479 (3) 0.2822 (3) 0.6894 (2) 0.0195 (4)
H8A 0.4129 0.1672 0.7043 0.023*
H8B 0.3997 0.3636 0.5950 0.023*
C9 0.7043 (3) 0.2716 (3) 0.68994 (19) 0.0186 (4)
C10 0.8435 (3) 0.1831 (3) 0.59025 (19) 0.0202 (5)
H3o 0.893 (6) 0.430 (5) 0.666 (3) 0.064 (10)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
F1 0.0218 (7) 0.0439 (9) 0.0346 (7) −0.0066 (6) 0.0015 (5) −0.0251 (7)
F2 0.0428 (9) 0.0221 (7) 0.0318 (7) −0.0061 (6) 0.0050 (6) −0.0156 (6)
F3 0.0443 (9) 0.0362 (8) 0.0169 (6) 0.0016 (6) −0.0076 (5) −0.0135 (6)
O1 0.0193 (7) 0.0196 (8) 0.0144 (6) 0.0026 (6) −0.0048 (5) −0.0075 (6)
O2 0.0167 (7) 0.0255 (8) 0.0282 (8) −0.0012 (6) −0.0067 (6) −0.0091 (7)
O3 0.0206 (8) 0.0202 (8) 0.0234 (7) −0.0026 (6) −0.0062 (6) −0.0083 (6)
C1 0.0222 (10) 0.0153 (10) 0.0148 (9) −0.0017 (8) −0.0037 (8) −0.0054 (8)
C2 0.0236 (11) 0.0194 (11) 0.0204 (9) 0.0016 (8) −0.0070 (8) −0.0079 (8)
C3 0.0335 (12) 0.0200 (11) 0.0159 (9) −0.0024 (9) −0.0064 (8) −0.0057 (8)
C4 0.0314 (12) 0.0222 (11) 0.0180 (9) −0.0064 (9) 0.0035 (8) −0.0094 (9)
C5 0.0189 (10) 0.0193 (11) 0.0256 (10) −0.0029 (8) −0.0018 (8) −0.0085 (9)
C6 0.0182 (10) 0.0172 (10) 0.0169 (9) −0.0043 (8) −0.0008 (7) −0.0057 (8)
C7 0.0161 (10) 0.0187 (10) 0.0221 (9) −0.0067 (8) −0.0033 (8) −0.0055 (8)
C8 0.0181 (10) 0.0224 (11) 0.0195 (9) −0.0040 (8) −0.0055 (8) −0.0073 (8)
C9 0.0218 (10) 0.0198 (10) 0.0156 (9) 0.0005 (8) −0.0067 (8) −0.0080 (8)
C10 0.0234 (11) 0.0224 (11) 0.0177 (9) −0.0044 (8) −0.0037 (8) −0.0092 (8)

Geometric parameters (Å, º)

F1—C10 1.341 (2) C3—C4 1.395 (3)
F2—C10 1.332 (2) C3—H3 0.9500
F3—C10 1.328 (2) C4—C5 1.381 (3)
O1—C1 1.379 (2) C4—H4 0.9500
O1—C9 1.419 (2) C5—C6 1.405 (3)
O2—C7 1.223 (3) C5—H5 0.9500
O3—C9 1.400 (2) C6—C7 1.467 (3)
O3—H3o 0.86 (3) C7—C8 1.512 (3)
C1—C2 1.393 (2) C8—C9 1.511 (3)
C1—C6 1.400 (3) C8—H8A 0.9900
C2—C3 1.382 (3) C8—H8B 0.9900
C2—H2 0.9500 C9—C10 1.534 (3)
C1—O1—C9 115.51 (14) O2—C7—C8 121.50 (17)
C9—O3—H3o 107 (2) C6—C7—C8 115.72 (17)
O1—C1—C2 116.74 (17) C9—C8—C7 111.33 (15)
O1—C1—C6 122.38 (16) C9—C8—H8A 109.4
C2—C1—C6 120.89 (17) C7—C8—H8A 109.4
C3—C2—C1 119.07 (19) C9—C8—H8B 109.4
C3—C2—H2 120.5 C7—C8—H8B 109.4
C1—C2—H2 120.5 H8A—C8—H8B 108.0
C2—C3—C4 121.14 (18) O3—C9—O1 111.26 (14)
C2—C3—H3 119.4 O3—C9—C8 108.60 (17)
C4—C3—H3 119.4 O1—C9—C8 111.81 (16)
C5—C4—C3 119.62 (18) O3—C9—C10 108.97 (16)
C5—C4—H4 120.2 O1—C9—C10 104.54 (16)
C3—C4—H4 120.2 C8—C9—C10 111.61 (15)
C4—C5—C6 120.47 (19) F3—C10—F2 107.65 (15)
C4—C5—H5 119.8 F3—C10—F1 107.39 (16)
C6—C5—H5 119.8 F2—C10—F1 106.72 (17)
C1—C6—C5 118.81 (17) F3—C10—C9 110.52 (17)
C1—C6—C7 119.75 (17) F2—C10—C9 112.73 (16)
C5—C6—C7 121.44 (18) F1—C10—C9 111.56 (15)
O2—C7—C6 122.72 (18)
C9—O1—C1—C2 −154.98 (17) O2—C7—C8—C9 152.82 (19)
C9—O1—C1—C6 24.6 (2) C6—C7—C8—C9 −30.0 (2)
O1—C1—C2—C3 −179.77 (17) C1—O1—C9—O3 70.0 (2)
C6—C1—C2—C3 0.7 (3) C1—O1—C9—C8 −51.6 (2)
C1—C2—C3—C4 −0.6 (3) C1—O1—C9—C10 −172.49 (15)
C2—C3—C4—C5 0.5 (3) C7—C8—C9—O3 −69.3 (2)
C3—C4—C5—C6 −0.5 (3) C7—C8—C9—O1 53.8 (2)
O1—C1—C6—C5 179.84 (16) C7—C8—C9—C10 170.52 (16)
C2—C1—C6—C5 −0.6 (3) O3—C9—C10—F3 −63.4 (2)
O1—C1—C6—C7 0.2 (3) O1—C9—C10—F3 177.59 (14)
C2—C1—C6—C7 179.72 (17) C8—C9—C10—F3 56.6 (2)
C4—C5—C6—C1 0.5 (3) O3—C9—C10—F2 176.10 (15)
C4—C5—C6—C7 −179.83 (18) O1—C9—C10—F2 57.1 (2)
C1—C6—C7—O2 −178.94 (18) C8—C9—C10—F2 −64.0 (2)
C5—C6—C7—O2 1.4 (3) O3—C9—C10—F1 56.0 (2)
C1—C6—C7—C8 3.9 (3) O1—C9—C10—F1 −63.0 (2)
C5—C6—C7—C8 −175.77 (17) C8—C9—C10—F1 175.96 (15)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O3—H3o···O2i 0.86 (3) 1.97 (3) 2.768 (2) 154 (3)
C2—H2···O1ii 0.95 2.60 3.444 (3) 148
C3—H3···F3iii 0.95 2.52 3.338 (3) 144
C8—H8A···F1iv 0.99 2.51 3.033 (2) 113
C8—H8B···O3v 0.99 2.56 3.547 (2) 175

Symmetry codes: (i) x+1, y, z; (ii) −x+2, −y, −z+2; (iii) x, y, z+1; (iv) x−1, y, z; (v) −x+1, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SU2468).

References

  1. Agilent (2012). CrysAlis PRO Agilent Technologies, Yarnton, England.
  2. Asiri, A. M., Al-Youbi, A. O., Faidallah, H. M. & Ng, S. W. (2011). Acta Cryst. E67, o2659–o2660. [DOI] [PMC free article] [PubMed]
  3. Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
  4. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Wang, Q., Terreaux, C., Marston, A., Tan, R. X., Stoeckli-Evans, H. & Hostettmann, K. (1999). Planta Med. 65, 729–731. [DOI] [PubMed]
  7. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812029170/su2468sup1.cif

e-68-o2299-sup1.cif (16.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029170/su2468Isup2.hkl

e-68-o2299-Isup2.hkl (104.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812029170/su2468Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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