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. 1986 Jan 10;14(1):489–499. doi: 10.1093/nar/14.1.489

Computer assisted microdensitometric analysis of footprinting autoradiographic DATA.

J C Dabrowiak, A Skorobogaty, N Rich, C P Vary, J N Vournakis
PMCID: PMC339433  PMID: 3003679

Abstract

A system comprised of a linear scanning microdensitometer interfaced to a personal computer has been developed to facilitate analysis of ligand-DNA footprinting autoradiograms. The system, which can be used to record density and sequence information from autoradiographic films, enables the user to relate the area under an autoradiographic band to the concentration of radiolabeled molecules present in the electrophoresis gel. This report describes the computer program which performs the calculations and discusses the ability of the system to accurately determine oligonucleotide concentration, as a function of band separation, photographic response, and the computational algorithm used to calculate band areas.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Ackers G. K., Johnson A. D., Shea M. A. Quantitative model for gene regulation by lambda phage repressor. Proc Natl Acad Sci U S A. 1982 Feb;79(4):1129–1133. doi: 10.1073/pnas.79.4.1129. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Dabrowiak J. C. Sequence specificity of drug-DNA interactions. Life Sci. 1983 Jun 27;32(26):2915–2931. doi: 10.1016/0024-3205(83)90642-2. [DOI] [PubMed] [Google Scholar]
  3. Fox K. R., Waring M. J. DNA structural variations produced by actinomycin and distamycin as revealed by DNAase I footprinting. Nucleic Acids Res. 1984 Dec 21;12(24):9271–9285. doi: 10.1093/nar/12.24.9271. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Lane M. J., Dabrowiak J. C., Vournakis J. N. Sequence specificity of actinomycin D and Netropsin binding to pBR322 DNA analyzed by protection from DNase I. Proc Natl Acad Sci U S A. 1983 Jun;80(11):3260–3264. doi: 10.1073/pnas.80.11.3260. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Maxam A. M., Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 1980;65(1):499–560. doi: 10.1016/s0076-6879(80)65059-9. [DOI] [PubMed] [Google Scholar]
  6. Van Dyke M. M., Dervan P. B. Echinomycin binding sites on DNA. Science. 1984 Sep 14;225(4667):1122–1127. doi: 10.1126/science.6089341. [DOI] [PubMed] [Google Scholar]

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