Supplementary File 2.
AP2/ERF family genes in rice.
| This study | Nakano et al10 | ||||
|---|---|---|---|---|---|
|
| |||||
| Group | Generic name | MSU (LOC_OS ID) | RAP (Os ID) | Gene name | |
| Ia | AP2/EREBP#022 | LOC_Os02g51300.12b | Os02g0747600 | BBM1 | |
| Ia | AP2/EREBP#153 | LOC_Os09g25600.12b | Os09g0423800 | AP2-1 | |
| Ia | AP2/EREBP#068 | LOC_Os08g07440.12b | Os08g0171100 | WRINKLED1 | |
| Ia | AP2/EREBP#155 | LOC_Os12g03290.12b | Os12g0126300 | AP2-1 | |
| Ia | AP2/EREBP#131 | LOC_Os11g03540.12b | Os11g0129700 | AP2-1 | |
| Ia | AP2/EREBP#079 | LOC_Os01g59780.12b | Os01g0813300 | ||
| Ia | AP2/EREBP#049 | LOC_Os05g32270.1 | Os05g0389000 | AP2-1 | |
| Ia | AP2/EREBP#109 | LOC_Os08g34360.12b | Os08g0442400 | BBM | |
| Ia | AP2/EREBP#052 | LOC_Os05g45954.12b | Os05g0536250 | AP2D4 | |
| Ia | AP2/EREBP#099 | LOC_Os06g05340.12b | Os06g0145700 | ||
| Ib | AP2/EREBP#044 | LOC_Os04g55970.12b | Os04g0653600 | ANT | |
| Ib | AP2/EREBP#086 | LOC_Os03g19900.12b | Os03g0313100 | ANT | |
| Ib | AP2/EREBP#088 | LOC_Os03g56050.12b | Os03g0770700 | ANT | |
| Ib | AP2/EREBP#137 | LOC_Os03g12950.12b | Os03g0232200 | BBM | |
| Ib | AP2/EREBP#141 | LOC_Os07g03250.12b | Os07g0124700 | PLETHORA | |
| Ib | AP2/EREBP#026 | LOC_Os03g07940.12b | Os03g0176300 | WRINKLED1 | |
| Ib | AP2/EREBP#118 | LOC_Os11g19060.12b | Os11g0295900 | BBM1 | |
| Ib | AP2/EREBP#005 | LOC_Os01g67410.12b | Os01g0899800 | ERF | |
| Ib | AP2/EREBP#060 | LOC_Os06g44750.12b | Os06g0657500 | ANT | |
| Ib | AP2/EREBP#018 | LOC_Os02g40070.1 | Os02g0614300 | ANT | |
| Ib | AP2/EREBP#037 | LOC_Os04g42570.1 | Os04g0504500 | ERF | |
| Ic | AP2/EREBP#092 | LOC_Os05g28800.1 | Os05g0356201 | ||
| Ic | AP2/EREBP#043 | LOC_Os04g55560.12b | Os04g0649100 | ERF | |
| Ic | AP2/EREBP#059 | LOC_Os06g43220.12b | Os06g0639200 | ERF | |
| Ic | AP2/EREBP#090 | LOC_Os05g03040.22b | Os05g0121600 | RAP2.7 | |
| Ic | AP2/EREBP#033 | LOC_Os03g60430.12b | Os03g0818800 | FHP | |
| Ic | AP2/EREBP#073 | LOC_Os07g13170.12b | Os07g0235800 | ERF | |
| II | AP2/EREBP#085 | LOC_Os03g06920.1 | Os03g0165200 | ||
| II | AP2/EREBP#077 | LOC_Os01g04750.1-B3 | Os01g0140700 | RAV | |
| II | AP2/EREBP#129 | LOC_Os01g04800.1-B3 | Os01g0141000 | RAV | |
| II | AP2/EREBP#096 | LOC_Os05g47650.1-B3 | Os05g0549800 | RAV | |
| II | AP2/EREBP#127 | LOC_Os01g49830.1-B3 | Os01g0693400 | RAV | |
| IIIa | AP2/EREBP#045 | LOC_Os04g56150.1 | Os04g0655700 | ||
| IIIa | AP2/EREBP#089 | LOC_Os04g32620.1 | Os04g0398000 | ERF | Os04g32620 |
| IIIa | AP2/EREBP#023 | LOC_Os02g55380.1 | Os02g0797100 | Os02g55380 | |
| IIIa | AP2/EREBP#012 | LOC_Os02g10760.1 | Os02g0202000 | ERF | Os02g10760 |
| IIIa | AP2/EREBP#057 | LOC_Os06g40150.1 | Os06g0604000 | ERF1 | Os06g40150 |
| IIIa | AP2/EREBP#159 | LOC_Os12g39330.1 | Os12g0582900 | RAP2.11 | Os12g39330 |
| IIIa | AP2/EREBP#075 | LOC_Os07g38750.1 | Os07g0575000 | Os07g38750 | |
| IIIa | AP2/EREBP#072 | LOC_Os07g10410.1 | Os07g0204000 | Os07g10410 | |
| IIIa | AP2/EREBP#008 | LOC_Os12g41030.1 | Os12g0602966 | Os12g41030 | |
| IIIa | AP2/EREBP#009 | LOC_Os12g41060.1 | Os12g0603300 | ERF3 | Os12g41060 |
| IIIa | AP2/EREBP#122 | LOC_Os09g11460.1 | Os09g0286600 | ERF | Os09g11460 |
| IIIa | AP2/EREBP#166 | LOC_Os09g11480.1 | Os09g0287000 | EREBP5 | Os09g11480 |
| IIIa | AP2/EREBP#164 | LOC_Os05g25260.1 | Os05g0316800 | EREBP9 | Os05g25260 |
| IIIa | AP2/EREBP#032 | LOC_Os03g60120.1 | Os03g0815800 | EREBPP5 | Os03g60120 |
| IIIa | AP2/EREBP#145 | LOC_Os07g12510.1 | Os07g0227600 | ERF | Os07g12510 |
| IIIa | AP2/EREBP#134 | LOC_Os01g12440.1 | Os01g0224100 | Os01g12440 | |
| IIIa | AP2/EREBP#162 | LOC_Os01g46870.1 | Os01g0657400 | EREBP5 | Os01g46870 |
| IIIa | AP2/EREBP#146 | LOC_Os06g06540.1 | Os06g0160500 | Os06g06540 | |
| IIIa | AP2/EREBP#058 | LOC_Os06g42990.1 | Os06g0636000 | ANT | Os06g42990 |
| IIIa | AP2/EREBP#014 | LOC_Os02g32040.1 | Os02g0520000 | Os02g32040 | |
| IIIa | AP2/EREBP#035 | LOC_Os04g32790.1 | Os04g0399800 | EREBP12 | Os04g32790 |
| IIIa | AP2/EREBP#069 | LOC_Os08g07700.1 | Os08g0173700 | EREBP4 | Os08g07700 |
| IIIa | AP2/EREBP#133 | LOC_Os07g47330.1 | Os07g0669500 | BSL | Os07g47330 |
| IIIa | AP2/EREBP#017 | LOC_Os02g38090.1 | Os02g0594300 | ESR1 | Os02g38090 |
| IIIa | AP2/EREBP#149 | LOC_Os04g52090.1 | Os04g0610400 | RAP2.6 | Os04g52090 |
| IIIa | AP2/EREBP#051 | LOC_Os05g41780.1 | Os05g0497300 | ERF2 | Os05g41780 |
| IIIa | AP2/EREBP#004 | LOC_Os01g58420.1 | Os01g0797600 | ERF3 | Os01g58420 |
| IIIa | AP2/EREBP#165 | LOC_Os05g41760.1 | Os05g0497200 | EREBP11 | Os05g41760 |
| IIIa | AP2/EREBP#046 | LOC_Os04g57340.1 | Os04g0669200 | ERF2 | Os04g57340 |
| IIIa | AP2/EREBP#011 | LOC_Os02g09650.1 | Os02g0189600 | ERF2 | Os02g09650 |
| IIIa | AP2/EREBP#061 | LOC_Os06g47590.1 | Os06g0691100 | ERF | Os06g47590 |
| IIIa | AP2/EREBP#010 | LOC_Os02g06330.1 | Os02g0158000 | ERF2 | Os02g06330 |
| IIIb | AP2/EREBP#151 | LOC_Os05g37640.1 | Os05g0448700 | Os05g37640 | |
| IIIb | AP2/EREBP#062 | LOC_Os05g37640.1 | Os05g0448675 | ERF | |
| IIIb | AP2/EREBP#067 | LOC_Os09g39850.1 | Os09g0572000 | ERF | Os09g39850 |
| IIIb | AP2/EREBP#106 | LOC_Os07g22730.1 | Os07g0410300 | ERF | Os07g22730 |
| IIIb | AP2/EREBP#074 | LOC_Os07g22770.1 | Os07g0410700 | EREBP1 | Os07g22770 |
| IIIb | AP2/EREBP#163 | LOC_Os03g64260.1 | Os03g0860100 | EREBP2 | Os03g64260 |
| IIIb | AP2/EREBP#097 | LOC_Os05g49010.1 | Os05g0564700 | Os05g49010 | |
| IIIb | AP2/EREBP#168 | LOC_Os04g46220.1 | Os04g0546800 | ERF | Os04g46220 |
| IIIb | AP2/EREBP#147 | LOC_Os02g43790.1 | Os02g0654700 | EREBP5 | Os02g43790 |
| IIIb | AP2/EREBP#034 | LOC_Os04g18650.1 | Os04g0257500 | TSRF1 | Os04g18650 |
| IIIb | AP2/EREBP#024 | LOC_Os03g05590.1 | Os03g0150200 | EREBP5 | Os03g05590 |
| IIIb | AP2/EREBP#154 | LOC_Os10g30840.1 | Os10g0445100 | Os10g30840 | |
| IIIb | AP2/EREBP#066 | LOC_Os09g39810.1 | Os09g0571700 | Os09g39810 | |
| IIIb | AP2/EREBP#071 | LOC_Os08g44960.1 | Os08g0563600 | ERF | Os08g44960 |
| IIIb | AP2/EREBP#078 | LOC_Os01g54890.1 | Os01g0752500 | EREBP6 | Os01g54890 |
| IIIb | AP2/EREBP#116 | LOC_Os10g41330.1 | Os10g0562900 | ERF | Os10g41330 |
| IIIb | AP2/EREBP#020 | LOC_Os02g43820.1 | Os02g0655200 | ERF3 | Os02g43820 |
| IIIb | AP2/EREBP#038 | LOC_Os04g46240.1 | Os04g0547500 | Os04g46240 | |
| IIIb | AP2/EREBP#039 | LOC_Os04g46250.1 | Os04g0547600 | ERF | Os04g46250 |
| IIIb | AP2/EREBP#027 | LOC_Os03g08460.1 | Os03g0182800 | ERF3 | Os03g08460 |
| IIIb | AP2/EREBP#030 | LOC_Os03g22170.1 | Os03g0341000 | RAP2.2 | Os03g22170 |
| IIIb | AP2/EREBP#076 | LOC_Os07g47790.1 | Os07g0674800 | EREBP | Os07g47790 |
| IIIb | AP2/EREBP#003 | LOC_Os01g21120.1 | Os01g0313300 | EREBP3 | Os01g21120 |
| IIIb | AP2/EREBP#093 | LOC_Os05g29810.1 | Os05g0361700 | EREBP2 | Os05g29810 |
| IIIb | AP2/EREBP#125 | LOC-Os03g08470.1 | Os03g0183000 | RAP2.6 | Os03g08470 |
| IIIb | AP2/EREBP#107 | LOC_Os07g42510.1 | Os07g0617000 | ERF2 | Os07g42510 |
| IIIb | AP2/EREBP#064 | LOC_Os09g26420.1 | Os09g0434500 | ERF2 | Os09g26420 |
| IIIb | AP2/EREBP#124 | LOC_Os06g09390.1 | Os06g0194000 | ERF3 | Os06g09390 |
| IIIb | AP2/EREBP#084 | LOC_Os02g54160.1 | Os02g0782700 | EREBP1 | Os02g54160 |
| IIIb | AP2/EREBP#029 | LOC_Os03g08500.1 | Os03g0183300 | CHP | Os03g08500 |
| IIIb | AP2/EREBP#028 | LOC_Os03g08490.1 | Os03g0183200 | CHP | Os03g08490 |
| IIIb | AP2/EREBP#006 | LOC_Os10g25170.1 | Os10g0390800 | EREBP3 | Os10g25170 |
| IIIc | AP2/EREBP#063 | LOC_Os09g13940.1 | Os09g0309700 | TINY | Os09g13940 |
| IIIc | AP2/EREBP#108 | LOC_Os08g27220.1 | Os08g0360800 | Os08g27220 | |
| IIIc | AP2/EREBP#110 | LOC_Os08g41030.1 | Os08g0521600 | ERF | Os08g41030 |
| IIIc | AP2/EREBP#015 | LOC_Os02g32140.1 | Os02g0521100 | Os02g32140 | |
| IIIc | AP2/EREBP#001 | LOC_Os01g04020.1 | Os01g0131600 | RAP2.6 | Os01g04020 |
| IIIc | AP2/EREBP#111 | LOC_Os08g42550.1 | Os08g0537900 | ERF3 | Os08g42550 |
| IIIc | AP2/EREBP#152 | LOC_Os08g36920.1 | Os08g0474000 | RAP2.6 | Os08g36920 |
| IIIc | AP2/EREBP#123 | LOC_Os09g28440.1 | Os09g0457900 | EREBPP LIKE | Os09g28440 |
| IIIc | AP2/EREBP#130 | LOC_Os02g52670.1 | Os02g0764700 | EREBP4 | Os02g52670 |
| IIIc | AP2/EREBP#036 | LOC_Os04g34970.1 | Os04g0429050 | Os04g34970 | |
| IIIc | AP2/EREBP#120 | LOC_Os02g34260.1 | Os02g0546600 | ERF | Os02g34260 |
| IIIc | AP2/EREBP#016 | LOC_Os02g34270.1 | Os02g0546800 | ERF | Os02g34270 |
| IIIc | AP2/EREBP#117 | LOC_Os11g06770.1 | Os110168500 | RAP2.6 | Os11g06770 |
| IIIc | AP2/EREBP#158 | LOC_Os12g07030.1 | Os12g0168100 | RAP2.6 | Os12g07030 |
| IIIc | AP2/EREBP#080 | LOC_Os01g64790.1 | Os01g0868000 | ERF | Os01g64790 |
| IIIc | AP2/EREBP#050 | LOC_Os05g36100.1 | Os05g36100 | ERF | Os05g36100 |
| IV-a | AP2/EREBP#053 | LOC_Os05g49700.1 | Os05g0572000 | CHP | Os05g49700 |
| IV-a | AP2/EREBP#170 | LOC_Os08g31580.1 | Os08g0408500 | ERF | Os08g31580 |
| IV-a | AP2/EREBP#113 | LOC_Os09g20350.1 | Os09g0369000 | DREBF1 | Os09g20350 |
| IV-a | AP2/EREBP#019 | LOC_Os02g42585.1 | Os02g0638650 | ERF | |
| IVa | AP2/EREBP#047 | AP004768.3 | AP004768.3 | ||
| IV-a | AP2/EREBP#119 | LOC_Os04g44670.1 | Os04g0529100 | ERF | Os04g44670 |
| IV-a | AP2/EREBP#156 | LOC_Os10g22600.1 | Os10g0371100 | ERF | Os10g22600 |
| IV-a | AP2/EREBP#121 | LOC_Os03g09170.1 | Os03g0191900 | ERF | Os03g09170 |
| IV-a | AP2/EREBP#103 | LOC_Os06g09810.1 | Os06g0198400 | Os06g09810 | |
| IV-a | AP2/EREBP#132 | LOC_Os02g51670.1 | Os02g0752800 | DREB2B | Os02g51670 |
| IV-b | AP2/EREBP#150 | LOC_Os05g28350.1 | Os05g0351200 | ERF | Os05g28350 |
| IV-b | AP2/EREBP#095 | LOC_Os05g39590.1 | Os05g0473300 | ERF1 | Os05g39590 |
| IV-b | AP2/EREBP#025 | LOC_Os03g07830.1 | Os03g0174400 | CHP | Os03g07830 |
| IV-b | AP2/EREBP#112 | LOC_Os08g45110.1 | Os08g0565200 | ERF | Os08g45110 |
| IV-b | AP2/EREBP#167 | LOC_Os01g07120.1 | Os01g0165000 | DREB2 | Os01g07120 |
| IV-b | AP2/EREBP#048 | LOC_Os05g27930.1 | Os05g0346200 | DRE | Os05g27930 |
| IV-c | AP2/EREBP#094 | LOC_Os05g34730.1 | Os05g0420300 | Os05g34730 | |
| IVc | AP2/EREBP#091 | LOC_Os01g66270.1 | Os01g0885900 | Os01g66270 | |
| IV-c | AP2/EREBP#128 | LOC_Os04g55520.1 | Os04g0648900 | DREB2F | Os04g55520 |
| IV-c | AP2/EREBP#142 | LOC_Os06g07030.1 | Os06g0166400 | TINY | Os06g07030 |
| IV-c | AP2/EREBP#102 | LOC_Os06g09790.1 | Os06g0198200 | CBF LIKE | Os06g09790 |
| IV-c | AP2/EREBP#139 | ------- | Os02g0767800 | ||
| IV-c | AP2/EREBP#135 | LOC_Os03g15660.1 | Os03g0263000 | TINY | Os03g15660 |
| IV-c | AP2/EREBP#070 | LOC_Os08g35240.1 | Os08g0454000 | Os08g35240 | |
| IV-c | AP2/EREBP#144 | LOC_Os04g48330.1 | Os04g0572200 | ERF027 | |
| IV-c | AP2/EREBP#143 | LOC_Os06g11940.1 | Os06g0223100 | DREB | Os06g11940 |
| IV-c | AP2/EREBP#104 | LOC_Os06g10780.1 | Os06g0210300 | ERF | Os06g10780 |
| IV-c | AP2/EREBP#083 | LOC_Os02g54050.1 | Os02g0781300 | Os02g54050 | |
| IV-c | AP2/EREBP#100 | LOC_Os06g08340.1 | Os06g0181700 | ERF | Os06g08340 |
| IV-c | AP2/EREBP#055 | LOC_Os06g09760.1 | Os06g197900 | Os06g09760 | |
| IVc | AP2/EREBP#031 | AP006056 | ------ | AP006056 | |
| IV-c | AP2/EREBP#101 | LOC_Os06g09717.1 | Os06g0197200 | ||
| IV-d | AP2/EREBP#042 | LOC_Os04g46440.1 | Os04g0550200 | Os04g46440 | |
| IV-d | AP2/EREBP#041 | LOC_Os04g46410.1 | Os04g0549800 | DREB1C | Os04g46410 |
| IV-d | AP2/EREBP#148 | LOC_Os02g43970.1 | Os02g0657000 | RAP211 | Os02g43970 |
| IV-d | AP2/EREBP#007 | LOC_Os10g41130.1 | Os10g0560700 | TINY | Os10g41130 |
| IV-d | AP2/EREBP#021 | LOC_Os02g43940.1 | Os02g0656600 | DREB2B | Os02g43940 |
| IV-d | AP2/EREBP#040 | LOC_Os04g46400.1 | Os04g0549700 | DREB1F | Os04g46400 |
| IV-d | AP2/EREBP#002 | LOC_Os01g10370.1 | Os01g0200600 | Os01g10370 | |
| IV-d | AP2/EREBP#082 | LOC_Os02g13710.1 | Os02g0231000 | TINY | Os02g13710 |
| IV-d | AP2/EREBP#056 | LOC_Os06g36000.1 | Os06g0553700 | Os06g36000 | |
| IV-d | AP2/EREBP#105 | LOC_Os06g11860.1 | Os06g0222400 | CHP | Os06g11860 |
| IV-d | AP2/EREBP#157 | LOC_Os11g13840.1 | Os11g0242300 | Os11g13840 | |
| IV-d | AP2/EREBP#087 | LOC_Os04g36640.1 | Os04g0443800 | DREB | Os04g36640 |
| IV-d | AP2/EREBP#140 | LOC_Os02g35240.1 | Os02g0558700 | DREB | Os02g35240 |
| IV-d | AP2/EREBP#126 | LOC_Os02g45420.1 | Os02g0676800 | DREB1E | Os02g45420 |
| IV-d | AP2/EREBP#115 | LOC_Os10g38000.1 | Os10g0523900 | DREB | Os10g38000 |
| IV-d | AP2/EREBP#136 | LOC_Os03g02650.1 | Os03g0117900 | ||
| IV-d | AP2/EREBP#081 | LOC_Os01g73770.1 | Os01g0968800 | DREB1F | Os01g73770 |
| IV-d | AP2/EREBP#138 | LOC_Os02g45450.1 | Os02g0677300 | CRT/DREB1 | Os02g45450 |
| IV-d | AP2/EREBP#160 | LOC_Os04g48350.1 | Os04g0572400 | CRT/DREB1 | Os04g48350 |
| IV-d | AP2/EREBP#098 | LOC_Os06g03670.1 | Os06g0127100 | CBF | Os06g03670 |
| IV-d | AP2/EREBP#169 | LOC_Os09g35010.1 | Os09g0522000 | CBF | |
| IV-d | AP2/EREBP#161 | LOC_Os08g43210.1 | Os08g0545500 | DREB1I | Os08g43210 |
| IV-d | AP2/EREBP#065 | LOC_Os09g35020.1 | Os09g0522100 | CBF3 | Os09g35020 |
| IV-d | AP2/EREBP#114 | LOC_Os09g35030.1 | Os09g0522200 | DREB1A | Os09g35030 |
| Soloist | AP2/EREBP#054 | LOC_Os06g06970.1 | Os06g0165600 | CRT/DRE | |
| AP2/EREBP#013 | LOC_Os02g29550.1 | Os02g0499000 | CHP | ||
| Total = 170 | |||||
Note:
**
The OS RAP (ID) number is mentioned because OsAP2/ERF#139 does not have the MSU locus identifier.