Abstract
C-reactive protein (CRP), a plasma protein of the innate immune system, is produced by hepatocytes. A critical regulatory region (−42 to −57) on the CRP promoter contains binding site for the IL-6-activated transcription factor C/EBPβ. The IL-1β-activated transcription factor NF-κB binds to a κB site located nearby (−63 to −74). The κB site overlaps an octamer motif (−59 to −66) which is the binding site for the constitutively active transcription factor Oct-1. Oct-1 is known to function both as a transcriptional repressor and as an activator depending upon the promoter context. Also, Oct-1 can regulate gene expression either by binding directly to the promoter or by interacting with other transcription factors bound to the promoter. The aim of this study was to investigate the functions of Oct-1 in regulating CRP expression. In luciferase transactivation assays, overexpressed Oct-1 inhibited (IL-6+IL-1β)-induced CRP expression in Hep3B cells. Deletion of the Oct-1 site from the promoter drastically reduced the cytokine response because the κB site was altered as a consequence of deleting the Oct-1 site. Surprisingly, overexpressed Oct-1 inhibited the residual (IL-6+IL-1β)-induced CRP expression through the promoter lacking the Oct-1 site. Similarly, deletion of the Oct-1 site reduced the induction of CRP expression in response to overexpressed C/EBPβ, and overexpressed Oct-1 inhibited C/EBPβ-induced CRP expression through the promoter lacking the Oct-1 site. We conclude that Oct-1 acts as a transcriptional repressor of CRP expression and it does so by occupying its cognate site on the promoter and also via other transcription factors by an as yet undefined mechanism.
Keywords: C-reactive protein, Oct-1, C/EBPβ, Hep3B cells, κB site
1. Introduction
C-reactive protein (CRP) is defined as an acute phase protein whose serum concentration increases in inflammatory conditions, such as rheumatoid arthritis, and in some non-inflammatory conditions, such as stress and cellular injury (Agrawal et al., 2009; Kushner et al., 2006). CRP is primarily produced by hepatocytes in response to IL-6 and IL-1β and its synthesis is regulated at the transcriptional level (Castell et al., 1990; Eklund, 2005; Goldberger et al., 1987; Toniatti et al., 1990a; Voleti and Agrawal, 2006; Yoshida et al., 2006; Zhang et al., 1995). In human hepatoma Hep3B cells, IL-6 induces CRP expression by activating transcription factors C/EBPβ and STAT3 (Ochrietor et al., 2000; Poli and Cortese, 1989; Ramji et al., 1993; Turkson et al., 1998; Wang et al., 1999; Young et al., 2008; Zhang et al., 1996). IL-1β, which alone does not induce CRP expression in Hep3B cells, synergistically enhances the effects of IL-6 by activating transcription factor NF-κB (Agrawal et al., 2003a; Darlington et al., 1986; Ganapathi et al., 1988; Kramer et al., 2008; Zhang et al., 1995). The proximal 157 bp of the CRP promoter are sufficient for the synergy between IL-6 and IL-1β (Zhang et al., 1995). Transcription factor c-Rel participates in regulating CRP expression, without binding to the promoter, via interactions with C/EBPβ (Agrawal et al., 2003b; Cha-Molstad et al., 2007). Five constitutively active transcription factors (C/EBPζ, RBP-Jκ, HNF-1, HNF-3, and Oct-1) are also involved in regulating CRP expression (Blaschke et al., 2006; Grimm et al., 2011; Nishikawa et al., 2008; Reiner et al., 2008; Toniatti et al., 1990b; Voleti and Agrawal, 2005).
The binding sites of various transcription factors on the CRP promoter are shown in Fig. 1A. C/EBPβ binds to two sites centered at positions −52 and −219 (Li and Goldman, 1996). The STAT3-binding site is located at −108 (Zhang et al., 1996). There are five NF-κB proteins, p50, p52, p65, c-Rel and Rel B, which form homodimers or heterodimers and bind to κB sites on the promoters to regulate gene expression (Ghosh and Hayden, 2012). On the CRP promoter, NF-κB p50-p50 binds to a nonconsensus κB site located at −47, overlapping the proximal C/EBP site, and NF-κB p50-p65 binds to a κB site located at −69 (Agrawal et al., 2001; Cha-Molstad et al., 2000; Voleti and Agrawal, 2005). C/EBPζ binds to the same proximal C/EBP site where C/EBPβ binds (Singh et al., 2007). RBP-Jκ binds to the same site where NF-κB p50-p50 binds (Singh et al., 2007). The binding sites for HNF-1 and HNF-3 are located at positions −67 and −62, respectively (Li and Goldman, 1996). Oct-1 binds to a site centered at position −63 (Arcone et al., 1988; Li and Goldman, 1996).
Oct-1 is a ubiquitous and constitutively active transcription factor (Singh et al., 1986; Sturm et al., 1988). Generally, Oct-1 functions as an activator of transcription (Dong et al., 2009; Inamoto et al., 1997; Shakya et al., 2011; Zhou and Yen, 1991). However, Oct-1 also represses transcription of some genes (Bhat et al., 1996; Shakya et al., 2011). Oct-1 binds specifically to an octamer motif (ATGCAAAT) and related sequences on promoters to regulate gene expression (Bhat et al., 1996; Singh et al., 1986). Oct-1 also functions by associating with basal transcription factors and other tissue-specific transcription factors and cofactors (Nakshatri et al., 1995; Préfontaine et al., 1999; Shakya et al., 2011; Ström et al., 1996; Voss et al., 1991; Wysocka and Herr, 2003; Zwilling et al., 1994).
It is not known how Oct-1 acts on the CRP promoter to regulate CRP gene expression. Previously, we reported that Oct-1 competes with NF-κB for binding to its cognate site which overlaps the κB site on the CRP promoter (Voleti and Agrawal, 2005). The aim of this study was to determine whether Oct-1 acts as a repressor or as an activator of CRP expression. Another aim of this study was to determine the requirement of the Oct-1-binding site on the CRP promoter for Oct-1 to regulate CRP expression.
2. Materials and Methods
2.1. Electrophoretic mobility shift assays (EMSA)
Hep3B cells were cultured in 100 mm dish. Cells were subjected to serum starvation overnight and then treated with IL-1β for 15 min, as described previously (Voleti and Agrawal, 2005). The confluency of cells was approximately 60% at the time of IL-1β-treatment. IL-β (R&D) was used at a concentration of 200 U/ml. Nuclear extracts were prepared by using NE-PER nuclear and cytoplasmic kit (Pierce), as described previously (Singh et al., 2007). The sequences of the oligonucleotides (oligo) used in EMSA are shown in Fig. 1B. Oligos were obtained from Integrated DNA Technologies. To prepare the probes, complementary oligos were annealed and labelled with [γ-32P] ATP. The probe-nuclear extract reaction buffer contained 16 mM HEPES (pH 7.9), 40 mM KCl, 1 mM EDTA, 2.5 mM DTT, 0.15% Nonidet P-40, 8% Histopaque, and 1 μ-g of poly dI-dC. In supershift experiments, antibodies (2 μ-g) were added to the reaction mixture and incubated on ice for 15 min before addition of the probe. In oligo competition experiments, 150 ng of unlabelled oligos was added to the reaction mixture before addition of the antibody and probe. The antibodies to p50 (H119), p65 (H286), HNF-1 (H205), HNF-3 (C20) and Oct-1 (C20) were purchased from Santa Cruz Biotechnologies. DNA-protein complexes were resolved in native 5% polyacrylamide gels containing 2.5% glycerol and visualized in a phosphorimager using Image-Quant software (GE Healthcare).
2.2. Construction of CRP promoter-luciferase (Luc) reporter vectors
The construction of wild-type (WT) CRP promoter constructs, Luc-157 WT (−157/+3 of CRP gene) and Luc-300 WT (−300/−1 of CRP promoter), has been reported previously (Agrawal et al., 2001; Kleemann et al., 2003; Voleti and Agrawal, 2005). These two WT constructs were used as templates for mutagenesis (deletion of all 8 bp of the Oct-1 site) of the CRP promoter by using QuickChange site-directed mutagenesis kit (Stratagene). The mutagenic primers are shown in Fig. 1C. Mutations were verified by DNA sequencing. Plasmids were purified using maxiprep plasmid isolation kit (Eppendorf).
2.3. Luciferase transactivation assays (Luc assays)
Hep3B cells were cultured in 6-well plates. Transfections were performed using TransIT-LT1 (Mirus) according to manufacturer's instructions. CRP promoter-Luc reporter constructs were used at 1 μg plasmid per well and the transcription factor expression vectors were used as mentioned in the figure legends. The confluency of cells was approximately 60% at the time of transfection. After transfection, cells were left in serum-free medium. After 16 h of transfection and serum starvation, the transfected cells were either treated with IL-6 and IL-1β for 24 h or left untreated. IL-6 (R&D) was used at a concentration of 1100 U/ml and IL-1β was used at a concentration of 200 U/ml. After 40 h of transfection, Luc assays were performed following the protocol supplied by the manufacturer (Promega). Luc activity was measured in a luminometer (Molecular Devices), as described previously (Singh et al., 2007).
3. Results
3.1. Oct-1 binds to its site on the CRP promoter and competes with the binding of NF-κB to the overlapping κB site
To demonstrate that Oct-1 binds to its cognate site on the CRP promoter, we performed EMSA using a 45 bp oligo (WT oligo; Fig. 1B) which contained the overlapping Oct-1 and κB sites and the adjacent C/EBP site (Fig. 2). We used nuclear extract from IL-1β-treated Hep3B cells as the source of NF-κB. Four specific complexes were formed on the probe (lanes 1 and 2). The fastest migrating complex was NF-κB (p50–p65) because the antibodies to p50 and p65 reduced the intensity of the complex (lanes 3 and 4). By using antibodies to HNF-1 and Oct-1, the top two complexes were found to contain HNF-1 and Oct-1 (lanes 5 and 6). Another specific complex contained HNF-3 (confirmation using antibodies to HNF-3 is shown in Fig. 3). When the Oct-1-containing complex was abolished (and, in part, supershifted) by treatment of the nuclear extract with anti-Oct-1 antibodies, the intensity of the NF-κB complex increased (compare lanes 1 and 6). These results suggest that Oct-1 binds to its site on the CRP promoter and competes with the binding of NF-κB to the overlapping κB site.
3.2. Oct-1 does not bind to CRP promoter in the absence of the Oct-1 site
The purpose of the next EMSA was to characterize the m-Oct promoter (promoter with the 8 bp Oct-1 site deleted; Fig. 1B) that we used in the Luc assays. We performed EMSA using WT oligo and m-Oct oligo as probes and nuclear extracts from untreated Hep3B cells (Fig. 3). Three specific complexes containing HNF-1, Oct-1 and HNF-3 were formed on the WT probe (lanes 1–5), whereas deletion of the Oct-1 site abolished the binding of not only Oct-1 but also HNF-1 and HNF-3 to the probe (lanes 6–10). These results suggested that Oct-1 would not bind directly to the m-Oct CRP promoter that we used in the Luc assays.
3.3. Oct-1 inhibits (IL-6+IL-1β)-induced CRP expression
To investigate the role of Oct-1 in regulating CRP expression, we conducted Luc assays using Luc 157-WT and Luc 300-WT promoter constructs and determined the effects of overexpressed Oct-1 on (IL-6+IL-1β)-induced CRP promoter-driven Luc activity. As shown in Fig. 4, Oct-1 inhibited (IL-6+IL-1β)-induced CRP promoter-driven Luc activity in a dose-dependent manner, irrespective of the size of the CRP promoter, that is, irrespective of the presence of one or both of the C/EBP sites (located at positions −52 and −219). From these results we conclude that Oct-1 acts as a transcriptional repressor of CRP expression.
3.4. Effects of deleting the Oct-1 site on basal and (IL-6+IL-1β)-induced CRP expression
To explore the mechanism of Oct-1-mediated repression of CRP expression, our approach was to delete the Oct-1-site (−59 to −66) from the promoter and use the m-Oct promoter construct, which does not bind Oct-1, in the Luc assays. We determined the contribution of the Oct-1 site, which overlaps the HNF-1, HNF-3 and κB sites, to the basal and (IL-6+IL-1β)-induced CRP expression. Deletion of the Oct-1 site from the promoter did not affect basal CRP expression (Fig. 5A). However, (IL-6+IL-1β)-induced CRP expression was drastically reduced when the Oct-1 site was deleted, irrespective of the size of the CRP promoter used in the assay (Fig. 5B). CRP expression was reduced by about 87% (from 14-fold to 2-fold) when Luc-157 m-Oct promoter was used and by about 91% (from 113-fold to 11-fold) when Luc-300 m-Oct promoter was used, compared to their respective WT constructs. These results suggest that the −59 to −66 region of the CRP promoter is required for full (IL-6+IL-1β)-induced CRP expression.
3.5. Oct-1 inhibits (IL-6+IL-1β)-induced CRP expression even if the Oct-1 site is deleted from the promoter
Because some residual (IL-6+IL-1β)-induced CRP transcription activity was present even if the Oct-1 site was deleted, we next determined whether overexpressed Oct-1 would have an effect on the residual (IL-6+IL-1β)-induced CRP expression. Surprisingly, overexpressed Oct-1 inhibited the (IL-6+IL-1β)-induced CRP expression through the m-Oct promoters of both size; the inhibition was about 55%, 71%, 83% and 64% on Luc-157 WT, Luc-157 m-Oct, Luc-300 WT and Luc-300 m-Oct promoters, respectively (Fig. 6). The Oct-1-mediated inhibition of CRP expression on the m-Oct promoters was not significantly different from that on the WT promoters. These results suggest that the inhibitory effect of Oct-1 on CRP expression is not mediated solely through the Oct-1 site and that Oct-1 represses CRP expression even when Oct-1 is not bound directly to the promoter.
3.6. Oct-1 inhibits C/EBPβ-induced CRP expression regardless of the Oct-1 site
To further explore the mechanism of repressive action of Oct-1 on the CRP promoter, we investigated the effects of overexpressed Oct-1 on overexpressed C/EBPβ-induced CRP expression, in the presence and absence of the Oct-1 site. We first determined the effects of deleting the Oct-1 site on C/EBPβ-induced CRP expression. C/EBPβ-induced CRP expression was reduced when the Oct-1 site was deleted, irrespective of the size of the CRP promoter used in the assay (Fig. 7A). CRP expression was reduced by about 53% (from 40-fold to 19-fold) when Luc-157 m-Oct promoter was used and by about 38% (from 59-fold to 37-fold) when Luc-300 m-Oct promoter was used, compared to their respective WT constructs. These results suggest that the −59 to −66 region of the CRP promoter is also required for full C/EBPβ-induced CRP expression. We next investigated whether overexpressed Oct-1 would have an effect on C/EBPβ-induced CRP expression. Surprisingly, overexpressed Oct-1 inhibited C/EBPβ-induced CRP expression through the m-Oct promoters of both size; the inhibition was about 71%, 78%, 57% and 79% on Luc-157 WT, Luc-157 m-Oct, Luc-300 WT and Luc-300 m-Oct promoters, respectively (Fig. 7B). These results further suggest that the inhibitory effect of Oct-1 on CRP expression is also mediated via interactions with other transcription factors bound to the CRP promoter.
4. Discussion
The aim of this study was to determine whether Oct-1 acts as a transcriptional repressor or as an activator of CRP expression. Our approach included overexpressing Oct-1 in (IL-6+IL-1β)-treated Hep3B cells transfected with CRP promoter linked to Luc reporter. We used a 157 bp promoter which contained only one C/EBP-site and a 300 bp promoter which contained both C/EBP-sites. Our major findings were: 1. Overexpressed Oct-1 inhibited (IL-6+IL-1β)-induced CRP promoter-driven Luc expression. 2. The inhibition of 157 bp CRP promoter-driven Luc expression was not different from that of 300 bp CRP promoter-driven Luc expression. These findings suggest that Oct-1 acts as a transcriptional repressor of CRP expression and that the proximal 157 bp of the CRP promoter is sufficient for the repressive action of Oct-1.
Because Oct-1 is also known to regulate expression of certain genes by associating with other transcription factors and cofactors (Nakshatri et al., 1995; Préfontaine et al., 1999; Shakya et al., 2011; Ström et al., 1996; Voss et al., 1991; Wysocka and Herr, 2003; Zwilling et al., 1994), we determined whether Oct-1 can regulate CRP expression without binding to its cognate site on the CRP promoter. Our approach included overexpressing Oct-1 in (IL-6+IL-1β)-treated Hep3B cells transfected with either WT CRP promoter or m-Oct CRP promoter linked to Luc reporter. Another approach was to investigate the effects of overexpressed Oct-1 on overexpressed C/EBPβ-induced CRP expression in Hep3B cells transfected with either WT CRP promoter or m-Oct CRP promoter linked to Luc reporter. Our major findings were: 1. (IL-6+IL-1β)-induced CRP expression was drastically reduced when the Oct-1 site was deleted, indicating that the −59 to −66 region of the CRP promoter was required for full (IL-6+IL-1β)-induced CRP expression. This finding was expected because the −59 to −66 region overlaps the binding site for the IL-1β-activated transcription factor NF-κB. 2. Overexpressed Oct-1 inhibited the residual (IL-6+IL-1β)-induced CRP expression through the m-Oct promoter, indicating that the repressive effect of Oct-1 on CRP expression was not mediated solely via the binding of Oct-1 to the Oct-1 site. 3. C/EBPβ-induced CRP expression was reduced when the Oct-1 site was deleted, indicating that the −59 to −66 region of the CRP promoter was also required for full C/EBPβ-induced CRP expression. This finding was unexpected because the −59 to −66 region does not overlap the C/EBP-site and, therefore, the deletion of this region should not have affected C/EBPβ-induced CRP expression. This finding therefore suggests that C/EBPβ cooperates with one or more transcription factors bound to the −59 to −66 region. 4. Overexpressed Oct-1 inhibited the residual C/EBPβ-induced CRP expression through the m-Oct promoter, further indicating that the repressive effect of Oct-1 on CRP expression was not mediated solely via the binding of Oct-1 to the Oct-1 site.
We have previously shown that Oct-1 binds to a 25 bp oligo containing the overlapping Oct-1 and κB sites derived from the CRP promoter and that Oct-1 and NF-κB compete with each other for binding to their overlapping binding sites (Voleti and Agrawal, 2005). In this study, we found similar results using the 45 bp oligo derived from the CRP promoter which contained the overlapping Oct-1 and κB sites and the adjacent C/EBP-site. Deleting the Oct-1 site from the oligo abolished the binding of not only Oct-1 to the oligo but also abolished the binding of HNF-1 and HNF-3 and perhaps also of NF-κB. This result was expected because the binding sites for these four transcription factors overlap. Our attempts to specifically abolish the binding of only Oct-1 to the CRP promoter, without disrupting the binding of HNF-1, HNF-3 and NF-κB to their binding sites on the promoter, have been unsuccessful; mutating either the last 2 bp or 4 bp of the Oct-1 site did not abolish the binding of Oct-1 to its site (data not shown).
It has been reported previously that the −42 to −57 region of the CRP promoter, where NF-κB p50-p50, C/EBPβ, C/EBPξ, RBP-Jκ, and c-Rel form complexes with the promoter, is a critical regulatory region participating in CRP expression (Agrawal et al., 2001, 2003a, 2003b; Cha-Molstad et al., 2000, 2007; Singh et al., 2007; Voleti and Agrawal, 2005; Young et al., 2008). Our current data suggest that the −57 to −74 region, where Oct-1, HNF-1, HNF-3, and NF-κB form complexes with the promoter, is also a critical regulatory region on the CRP promoter, that Oct-1 works through both regulatory regions, and that the two regulatory regions on the CRP promoter regulate CRP expression cooperatively.
Combined data suggest that Oct-1 acts as a transcriptional repressor of CRP gene expression and that it does so through two mechanisms. The first mechanism involves the binding of Oct-1 to its site; the competition between Oct-1 and NF-κB for binding to their overlapping sites contributes to the regulation of CRP expression, as we have proposed previously (Voleti and Agrawal, 2005). Competition between Oct-1 and NF-κB, between Oct-1 and C/EBPβ, and between Oct-1 and NF-Y, and subsequent repression of the promoter activity, has been shown for several other genes (dela Paz et al., 2007; Osborne et al., 2004; Wu et al., 1997). It is possible that when Oct-1 binds to an overlapping site of a transcriptional activator, then Oct-1 usually acts as a transcriptional repressor. The second mechanism of Oct-1-mediated repression of CRP expression, as yet undefined, involves possible interactions with other transcription factors bound to the CRP promoter.
Highlights
On the CRP promoter, Oct-1 acts as a transcriptional repressor.
To repress CRP expression, Oct-1 uses two mechanisms.
One mechanism involves binding of Oct-1 to the CRP promoter.
The other mechanism involves interactions of Oct-1 with other transcription factors bound to the CRP promoter.
Acknowledgements
We are grateful to Dr. Peter F. Johnson for the gift of expression vector encoding C/EBPβ and Dr. Winship Herr for the gift of expression vector encoding Oct-1.
This work was supported in part by the National Institutes of Health (R01HL071233; A.A.)
Abbreviations
- CRP
C-reactive protein
- EMSA
electrophoretic mobility shift assay
- Luc
luciferase
- m-OCT
promoter and oligos with the Oct-1 site deleted
- Oligo
oligonucleotide
- RLU
relative luciferase units
- WT
wild-type
Footnotes
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