Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1987 Jun 11;15(11):4645–4653. doi: 10.1093/nar/15.11.4645

1H NMR study of the exchangeable protons of the duplex d(GCGTTGCG).d(CGCAACGC) containing a thymine photodimer.

J Kemmink, R Boelens, T Koning, G A van der Marel, J H van Boom, R Kaptein
PMCID: PMC340886  PMID: 3035498

Abstract

A comparison is presented of the imino proton NMR spectra of the double stranded octamer d(GCGTTGCG).d(CGCAACGC) and the same octamer in which the two central thymine residues occur as a cis-syn thymine dimer. Except for the terminal base pairs all imino protons were detected and assigned in the NMR spectrum. The spectra show that in the thymine dimer duplex, contrary to common belief, all base pairs occur in a hydrogen bonded form, although the hydrogen bonds of the two central AT base pairs are substantially weakened. The melting temperature decreases about 13 degrees C on thymine dimer formation.

Full text

PDF
4645

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Aboul-ela F., Koh D., Tinoco I., Jr, Martin F. H. Base-base mismatches. Thermodynamics of double helix formation for dCA3XA3G + dCT3YT3G (X, Y = A,C,G,T). Nucleic Acids Res. 1985 Jul 11;13(13):4811–4824. doi: 10.1093/nar/13.13.4811. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Hayes F. N., Williams D. L., Ratlift R. L., Varghese A. J., Rupert C. S. Effect of a single thymine photodimer on the oligodeoxythymidylate-polydeoxyadenylate interaction. J Am Chem Soc. 1971 Sep;93(19):4940–4942. doi: 10.1021/ja00748a065. [DOI] [PubMed] [Google Scholar]
  3. Hilbers C. W., Haasnoot C. A., de Bruin S. H., Joordens J. J., van der Marel G. A., van Boom J. H. Hairpin formation in synthetic oligonucleotides. Biochimie. 1985 Jul-Aug;67(7-8):685–695. doi: 10.1016/s0300-9084(85)80156-5. [DOI] [PubMed] [Google Scholar]
  4. Pearlman D. A., Holbrook S. R., Pirkle D. H., Kim S. H. Molecular models for DNA damaged by photoreaction. Science. 1985 Mar 15;227(4692):1304–1308. doi: 10.1126/science.3975615. [DOI] [PubMed] [Google Scholar]
  5. Rao S. N., Keepers J. W., Kollman P. The structure of d(CGCGAAT[]TCGCG) . d(CGCGAATTCGCG); the incorporation of a thymine photodimer into a B-DNA helix. Nucleic Acids Res. 1984 Jun 11;12(11):4789–4807. doi: 10.1093/nar/12.11.4789. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. WULFF D. L., RUPERT C. S. Disappearance of thymine photodimer in ultraviolet irradiated DNA upon treatment with a photoreactivating enzyme from baker's yeast. Biochem Biophys Res Commun. 1962 Apr 20;7:237–240. doi: 10.1016/0006-291x(62)90181-x. [DOI] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES