Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jul 10;68(Pt 8):m1046. doi: 10.1107/S1600536812030334

Bis[3,3′-(piperazine-1,4-di­yl)­dipropan­aminium] di-μ2-sulfido-bis­[disulfido­german­ate(IV)]

Nian-Nian Wang a, Chao Xu a, Taike Duan a, Qun Chen b, Qian-Feng Zhang a,b,*
PMCID: PMC3414115  PMID: 22904722

Abstract

In the title compound, (C10H26N4)2[Ge2S6], the dimeric [Ge2S6]4− anion formed by two edge-sharing GeS4 tetra­hedral units lies around an inversion centre. The average terminal and bridging Ge—S bond lengths are 2.162 (7) and 2.267 (15) Å, respectively. The inorganic anions and organic cations are organized into a three-dimensional network by numerous N—H⋯S hydrogen bonds.

Related literature  

For background to main group metal–chalcogenide compounds, see: Bedard et al. (1999); Nellis et al. (1995); Blachnik & Fehlker (2001); Zheng et al. (2002, 2005). For related structures, see: Jia et al. (2005); Xu et al. (2012).graphic file with name e-68-m1046-scheme1.jpg

Experimental  

Crystal data  

  • (C10H26N4)2[Ge2S6]

  • M r = 742.24

  • Monoclinic, Inline graphic

  • a = 12.0111 (4) Å

  • b = 7.7759 (3) Å

  • c = 18.9777 (7) Å

  • β = 103.569 (1)°

  • V = 1722.99 (11) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 2.13 mm−1

  • T = 296 K

  • 0.38 × 0.29 × 0.16 mm

Data collection  

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1997) T min = 0.498, T max = 0.727

  • 16480 measured reflections

  • 3950 independent reflections

  • 3194 reflections with I > 2σ(I)

  • R int = 0.021

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.113

  • S = 1.07

  • 3950 reflections

  • 165 parameters

  • H-atom parameters constrained

  • Δρmax = 1.15 e Å−3

  • Δρmin = −0.37 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812030334/gk2485sup1.cif

e-68-m1046-sup1.cif (23.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812030334/gk2485Isup2.hkl

e-68-m1046-Isup2.hkl (193.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H3B⋯S2i 0.89 2.48 3.278 (3) 149
N3—H3C⋯S3 0.89 2.34 3.225 (3) 170
N3—H3A⋯S2ii 0.89 2.61 3.440 (3) 157
N3—H3A⋯S3ii 0.89 2.83 3.366 (3) 120
N4—H4C⋯S2iii 0.89 2.53 3.408 (4) 169
N4—H4B⋯S2iv 0.89 2.34 3.228 (4) 178
N4—H4A⋯S3v 0.89 2.39 3.275 (4) 173

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic.

Acknowledgments

This project was supported by the Program for New Century Excellent Talents in Universities of China (grant No. NCET-08–0618).

supplementary crystallographic information

Comment

Since Bedard reported the first porous metal chalcogenide open framework in 1999 (Bedard et al., 1999), a series of binary and ternary metal chalcogenide open-frameworks have been synthesized (Nellis et al., 1995; Zheng et al., 2005). Among the various synthetic methods, hydrothermal technique is the best choice for preparing related compounds due to gentle reaction conditions. Moreover, organic amines are often used as templates in the hydrothermal reactions. Therefore, amines with different structures play an important role for templating effect in the construction of open-frameworks (Zheng et al., 2002). In this paper, we report the hydrothermal synthesis and crystal structure of an amine-templated thiogermanate, [bappH2]2[Ge2S6] (bapp = 1,4-bis(3-aminopropyl)piperazine).

The title compound crystallizes in the monoclinic space group P21/c with a dimeric anion of [Ge2S6]4- located around inversion centre and with diprotonated 1,4-bis(3-aminopropyl)- piperazine in general position (Fig. 1). The dimeric [Ge2S6]4- anion is constructed by two edge-sharing tetrahedral GeS4 units forming a planar Ge2S2 quadrilateral with the four terminal sulfur atoms lying on a perpendicular plane. The S—Ge—S angles in tetrahedral GeS4 unit are in the ranges from 93.82 (3) to 114.12 (4)°. The average bond length of Ge—St (terminal bond) of 2.162 (7) Å is obviously shorter than that of Ge—Sb (bridging bond) [2.267 (15) Å]. The bond length values are similar to those found in the other thiogermanates (Jia et al. 2005; Xu et al., 2012). The two terminal amine groups of 4-bis(3-aminopropyl)piperazine are protonated to balance negative charges of the dimeric anion. The [Ge2S6]4- anions and [bappH2]2+ cations are organized into an extended three-dimensional network by N—H···S hydrogen bonds (Fig. 2 and Table 1).

Experimental

GeO2 (104.6 mg, 1.0 mmol) and S powder (128.0 mg, 4.0 mmol) in the distilled water (4.8550 g) were mixed with 1,4-bis(3-aminopropyl)piperazine (2.5640 g) in a 23 mL Teflon-lined stainless steel autoclave to and stirred for 20 min. The vessel was sealed and heated to 190°C for 6 d and then cooled to room temperature. Colorless flake crystals were obtained and air dried. The yield based on GeO2 is about 45%. Analysis, calculated for C20H52N8S6Ge2: C 32.4, H 7.06, N 15.1%; found C 32.2, H 6.98, N 14.8 %.

Refinement

All C-bound H atoms were positioned geometrically and refined as riding atoms with C—H = 0.97 Å and Uiso(H) = 1.2Ueq(C)]. N-bound H atoms were located from a difference Fourier map but for final refinement they were were positioned geometrically with N—H = 0.89 Å and Uiso(H) = 1.5Ueq(N)].

Figures

Fig. 1.

Fig. 1.

The structure of the title compound, showing displacement ellipsoids at the 50% probability level. Atoms with the A label were generated by the symmetry operation -x+1, -y+1, -z.

Fig. 2.

Fig. 2.

Packing diagram of the title compound. Dashed lines donote hydrogen bonds.

Crystal data

(C10H26N4)2[Ge2S6] F(000) = 776
Mr = 742.24 Dx = 1.431 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 6783 reflections
a = 12.0111 (4) Å θ = 2.5–27.0°
b = 7.7759 (3) Å µ = 2.13 mm1
c = 18.9777 (7) Å T = 296 K
β = 103.569 (1)° Block, colourless
V = 1722.99 (11) Å3 0.38 × 0.29 × 0.16 mm
Z = 2

Data collection

Bruker APEXII CCD area-detector diffractometer 3950 independent reflections
Radiation source: fine-focus sealed tube 3194 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.021
phi and ω scans θmax = 27.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997) h = −15→15
Tmin = 0.498, Tmax = 0.727 k = −10→6
16480 measured reflections l = −22→24

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113 H-atom parameters constrained
S = 1.07 w = 1/[σ2(Fo2) + (0.0586P)2 + 1.3201P] where P = (Fo2 + 2Fc2)/3
3950 reflections (Δ/σ)max = 0.001
165 parameters Δρmax = 1.15 e Å3
0 restraints Δρmin = −0.37 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Ge1 0.53261 (3) 0.44178 (4) 0.080248 (14) 0.04128 (12)
S1 0.38171 (8) 0.59109 (12) 0.01275 (4) 0.0541 (2)
S2 0.47606 (9) 0.19876 (11) 0.11556 (4) 0.0606 (3)
S3 0.63552 (8) 0.59389 (11) 0.16645 (4) 0.0565 (2)
N1 0.1088 (3) 0.4905 (5) 0.1532 (2) 0.0769 (10)
N2 −0.0300 (3) 0.1852 (5) 0.1210 (3) 0.1023 (15)
N3 0.4526 (3) 0.8528 (4) 0.20970 (15) 0.0630 (8)
H3A 0.4580 0.8401 0.2570 0.094*
H3B 0.4769 0.9572 0.2013 0.094*
H3C 0.4956 0.7738 0.1948 0.094*
N4 −0.3627 (4) −0.0949 (5) 0.0505 (2) 0.0782 (10)
H4A −0.3673 −0.1851 0.0785 0.117*
H4B −0.3923 −0.1222 0.0043 0.117*
H4C −0.4016 −0.0072 0.0630 0.117*
C6 0.1475 (5) 0.3408 (7) 0.1201 (5) 0.121 (2)
H6A 0.2301 0.3319 0.1362 0.145*
H6B 0.1284 0.3547 0.0679 0.145*
C7 0.0954 (5) 0.1827 (7) 0.1388 (5) 0.146 (3)
H7A 0.1227 0.1621 0.1903 0.175*
H7B 0.1207 0.0875 0.1134 0.175*
C8 −0.0710 (4) 0.3401 (7) 0.1474 (4) 0.0981 (16)
H8A −0.0559 0.3348 0.1999 0.118*
H8B −0.1532 0.3475 0.1288 0.118*
C9 −0.0168 (4) 0.4974 (6) 0.1262 (4) 0.0932 (15)
H9A −0.0357 0.5077 0.0738 0.112*
H9B −0.0466 0.5979 0.1459 0.112*
C10 0.1646 (4) 0.6473 (6) 0.1389 (3) 0.0880 (13)
H10A 0.1219 0.7451 0.1504 0.106*
H10B 0.1631 0.6528 0.0876 0.106*
C11 0.2881 (4) 0.6607 (6) 0.1822 (2) 0.0713 (10)
H11A 0.2915 0.6441 0.2334 0.086*
H4N 0.3338 0.5716 0.1669 0.086*
C12 0.3349 (4) 0.8321 (5) 0.1708 (2) 0.0725 (11)
H12A 0.3294 0.8485 0.1195 0.087*
H12B 0.2888 0.9201 0.1865 0.087*
C13 −0.0732 (7) 0.0324 (9) 0.1558 (5) 0.151 (3)
H13A −0.0359 −0.0697 0.1430 0.182*
H13B −0.0489 0.0458 0.2079 0.182*
C14 −0.1959 (7) 0.0022 (10) 0.1373 (3) 0.129 (3)
H14A −0.2341 0.1056 0.1479 0.155*
H14B −0.2130 −0.0889 0.1680 0.155*
C15 −0.2442 (5) −0.0463 (8) 0.0594 (3) 0.1042 (18)
H15A −0.2385 0.0503 0.0281 0.125*
H15B −0.2012 −0.1416 0.0461 0.125*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Ge1 0.0602 (2) 0.03395 (18) 0.02960 (17) 0.00094 (13) 0.01036 (13) 0.00344 (11)
S1 0.0626 (5) 0.0634 (5) 0.0388 (4) 0.0157 (4) 0.0166 (3) 0.0086 (3)
S2 0.0973 (7) 0.0428 (4) 0.0406 (4) −0.0147 (4) 0.0140 (4) 0.0072 (3)
S3 0.0768 (6) 0.0487 (5) 0.0396 (4) −0.0091 (4) 0.0046 (4) −0.0021 (3)
N1 0.066 (2) 0.0546 (18) 0.111 (3) 0.0014 (16) 0.0225 (19) −0.0006 (19)
N2 0.076 (2) 0.062 (2) 0.152 (4) −0.0009 (19) −0.008 (3) −0.010 (3)
N3 0.099 (2) 0.0472 (16) 0.0448 (15) −0.0004 (16) 0.0211 (15) −0.0012 (12)
N4 0.102 (3) 0.068 (2) 0.066 (2) −0.0073 (19) 0.0226 (19) −0.0058 (17)
C6 0.077 (3) 0.074 (3) 0.216 (7) 0.006 (3) 0.040 (4) −0.035 (4)
C7 0.078 (3) 0.062 (3) 0.271 (10) 0.010 (3) −0.014 (5) −0.027 (4)
C8 0.068 (3) 0.083 (3) 0.138 (5) −0.008 (2) 0.012 (3) −0.011 (3)
C9 0.073 (3) 0.066 (3) 0.136 (5) 0.013 (2) 0.014 (3) 0.002 (3)
C10 0.088 (3) 0.068 (3) 0.109 (4) 0.005 (2) 0.026 (3) 0.013 (3)
C11 0.074 (2) 0.075 (3) 0.066 (2) 0.000 (2) 0.0193 (19) −0.001 (2)
C12 0.101 (3) 0.058 (2) 0.056 (2) 0.014 (2) 0.014 (2) −0.0031 (18)
C13 0.147 (6) 0.091 (4) 0.185 (8) −0.047 (4) −0.022 (6) 0.026 (5)
C14 0.157 (6) 0.136 (5) 0.086 (4) −0.068 (5) 0.012 (4) 0.015 (4)
C15 0.107 (4) 0.128 (5) 0.079 (3) −0.018 (3) 0.025 (3) 0.004 (3)

Geometric parameters (Å, º)

Ge1—S3 2.1573 (9) C7—H7B 0.9700
Ge1—S2 2.1669 (9) C8—C9 1.485 (7)
Ge1—S1 2.2770 (9) C8—H8A 0.9700
S1—Ge1i 2.2564 (8) C8—H8B 0.9700
N1—C10 1.448 (6) C9—H9A 0.9700
N1—C6 1.450 (6) C9—H9B 0.9700
N1—C9 1.476 (6) C10—C11 1.522 (6)
N2—C8 1.435 (7) C10—H10A 0.9700
N2—C7 1.465 (7) C10—H10B 0.9700
N2—C13 1.509 (8) C11—C12 1.482 (6)
N3—C12 1.442 (5) C11—H11A 0.9700
N3—H3A 0.8900 C11—H4N 0.9700
N3—H3B 0.8900 C12—H12A 0.9700
N3—H3C 0.8900 C12—H12B 0.9700
N4—C15 1.443 (7) C13—C14 1.451 (10)
N4—H4A 0.8900 C13—H13A 0.9700
N4—H4B 0.8900 C13—H13B 0.9700
N4—H4C 0.8900 C14—C15 1.504 (8)
C6—C7 1.460 (8) C14—H14A 0.9700
C6—H6A 0.9700 C14—H14B 0.9700
C6—H6B 0.9700 C15—H15A 0.9700
C7—H7A 0.9700 C15—H15B 0.9700
S3—Ge1—S2 114.15 (3) N1—C9—C8 110.6 (4)
S3—Ge1—S1i 111.71 (4) N1—C9—H9A 109.5
S2—Ge1—S1i 112.13 (4) C8—C9—H9A 109.5
S3—Ge1—S1 112.70 (4) N1—C9—H9B 109.5
S2—Ge1—S1 110.66 (4) C8—C9—H9B 109.5
S1i—Ge1—S1 93.82 (3) H9A—C9—H9B 108.1
Ge1i—S1—Ge1 86.18 (3) N1—C10—C11 113.1 (4)
C10—N1—C6 112.7 (4) N1—C10—H10A 109.0
C10—N1—C9 112.6 (4) C11—C10—H10A 109.0
C6—N1—C9 106.5 (4) N1—C10—H10B 109.0
C8—N2—C7 110.4 (4) C11—C10—H10B 109.0
C8—N2—C13 109.1 (6) H10A—C10—H10B 107.8
C7—N2—C13 109.2 (5) C12—C11—C10 109.7 (4)
C12—N3—H3A 109.5 C12—C11—H11A 109.7
C12—N3—H3B 109.5 C10—C11—H11A 109.7
H3A—N3—H3B 109.5 C12—C11—H4N 109.7
C12—N3—H3C 109.5 C10—C11—H4N 109.7
H3A—N3—H3C 109.5 H11A—C11—H4N 108.2
H3B—N3—H3C 109.5 N3—C12—C11 112.7 (3)
C15—N4—H4A 109.5 N3—C12—H12A 109.1
C15—N4—H4B 109.5 C11—C12—H12A 109.1
H4A—N4—H4B 109.5 N3—C12—H12B 109.1
C15—N4—H4C 109.5 C11—C12—H12B 109.1
H4A—N4—H4C 109.5 H12A—C12—H12B 107.8
H4B—N4—H4C 109.5 C14—C13—N2 117.1 (6)
N1—C6—C7 111.8 (5) C14—C13—H13A 108.0
N1—C6—H6A 109.3 N2—C13—H13A 108.0
C7—C6—H6A 109.3 C14—C13—H13B 108.0
N1—C6—H6B 109.3 N2—C13—H13B 108.0
C7—C6—H6B 109.3 H13A—C13—H13B 107.3
H6A—C6—H6B 107.9 C13—C14—C15 114.5 (7)
C6—C7—N2 114.2 (5) C13—C14—H14A 108.6
C6—C7—H7A 108.7 C15—C14—H14A 108.6
N2—C7—H7A 108.7 C13—C14—H14B 108.6
C6—C7—H7B 108.7 C15—C14—H14B 108.6
N2—C7—H7B 108.7 H14A—C14—H14B 107.6
H7A—C7—H7B 107.6 N4—C15—C14 108.9 (5)
N2—C8—C9 112.9 (5) N4—C15—H15A 109.9
N2—C8—H8A 109.0 C14—C15—H15A 109.9
C9—C8—H8A 109.0 N4—C15—H15B 109.9
N2—C8—H8B 109.0 C14—C15—H15B 109.9
C9—C8—H8B 109.0 H15A—C15—H15B 108.3
H8A—C8—H8B 107.8

Symmetry code: (i) −x+1, −y+1, −z.

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N3—H3B···S2ii 0.89 2.48 3.278 (3) 149
N3—H3C···S3 0.89 2.34 3.225 (3) 170
N3—H3A···S2iii 0.89 2.61 3.440 (3) 157
N3—H3A···S3iii 0.89 2.83 3.366 (3) 120
N4—H4C···S2iv 0.89 2.53 3.408 (4) 169
N4—H4B···S2v 0.89 2.34 3.228 (4) 178
N4—H4A···S3vi 0.89 2.39 3.275 (4) 173

Symmetry codes: (ii) x, y+1, z; (iii) −x+1, y+1/2, −z+1/2; (iv) x−1, y, z; (v) −x, −y, −z; (vi) x−1, y−1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: GK2485).

References

  1. Bedard, R. L., Wilson, S. T., Vail, L. D., Bennettand, J. M. & Flanigen, E. M. (1999). Zeolites: Facts, Figures, Future. Proceedings of the 8th International Zeolite Conference, edited by P. A. Jacobs & R. A. van Santen, p. 375. Amsterdam: Elsevier.
  2. Blachnik, R. & Fehlker, A. (2001). Z. Kristallogr. 216, 215-221.
  3. Bruker (2005). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Jia, D.-X., Dai, J., Zhu, Q.-Y., Cao, L.-H. & Lin, H.-H. (2005). J. Solid State Chem. 178, 874-881.
  5. Nellis, D. M., Ko, Y., Tan, K., Koch, S. & Parise, J. (1995). J. Chem. Soc. Chem. Commun. pp. 541-542.
  6. Sheldrick, G. M. (1997). SADABS University of Göttingen, Germany.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Xu, C., Zhang, J.-J., Duan, T., Chen, Q. & Zhang, Q.-F. (2012). Acta Cryst. E68, m154. [DOI] [PMC free article] [PubMed]
  9. Zheng, N., Bu, X. & Feng, P. (2005). Chem. Commun. pp. 2805–2806. [DOI] [PubMed]
  10. Zheng, N., Bu, X., Wang, B. & Feng, P. (2002). Science, 298, 2366-2369. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812030334/gk2485sup1.cif

e-68-m1046-sup1.cif (23.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812030334/gk2485Isup2.hkl

e-68-m1046-Isup2.hkl (193.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES