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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jul 28;68(Pt 8):m1124. doi: 10.1107/S1600536812033168

Dibromido(dimethyl sulfoxide-κO)(6-methyl-2,2′-bipyridine-κ2 N,N′)cadmium

Sadif A Shirvan a,*, Sara Haydari Dezfuli a
PMCID: PMC3414166  PMID: 22904773

Abstract

In the title compound, [CdBr2(C11H10N2)(C2H6OS)], the CdII atom is five-coordinated in a distorted trigonal–bipyramidal geometry by two N atoms from a 6-methyl-2,2′-bipyridine ligand, one O atom from a dimethyl sulfoxide ligand and two Br atoms. An intra­molecular C—H⋯O hydrogen bond occurs. The crystal structure is stabilized by C—H⋯Br hydrogen bonds and π–π contacts between the pyridine rings [centroid–centroid distances = 3.582 (5) and 3.582 (5) Å].

Related literature  

For related structures, see: Ahmadi et al. (2009); Ahmadi, Ebadi et al. (2008); Ahmadi, Kalateh et al. (2008); Alizadeh et al. (2009); Amani et al. (2009); Kalateh et al. (2010); Newkome et al. (1982); Onggo et al. (1990, 2005); Shirvan & Haydari Dezfuli (2012a ,b ).graphic file with name e-68-m1124-scheme1.jpg

Experimental  

Crystal data  

  • [CdBr2(C11H10N2)(C2H6OS)]

  • M r = 520.56

  • Monoclinic, Inline graphic

  • a = 9.0169 (6) Å

  • b = 14.5503 (8) Å

  • c = 14.1473 (8) Å

  • β = 106.561 (5)°

  • V = 1779.11 (18) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 5.83 mm−1

  • T = 293 K

  • 0.40 × 0.35 × 0.30 mm

Data collection  

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2001) T min = 0.070, T max = 0.240

  • 14429 measured reflections

  • 3487 independent reflections

  • 2683 reflections with I > 2σ(I)

  • R int = 0.114

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.059

  • wR(F 2) = 0.175

  • S = 1.05

  • 3487 reflections

  • 181 parameters

  • H-atom parameters constrained

  • Δρmax = 1.35 e Å−3

  • Δρmin = −1.58 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812033168/hy2573sup1.cif

e-68-m1124-sup1.cif (18.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033168/hy2573Isup2.hkl

e-68-m1124-Isup2.hkl (171KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C11—H11⋯O1 0.93 2.35 3.003 (12) 127
C13—H13C⋯Br2i 0.96 2.89 3.722 (15) 146

Symmetry code: (i) Inline graphic.

Acknowledgments

We are grateful to the Islamic Azad University, Omidieh Branch, for financial support.

supplementary crystallographic information

Comment

Recently, we reported the synthesis and crystal structures of [Cd(5,5'-dmbpy)(µ-Br)2]n (Shirvan & Haydari Dezfuli, 2012a) and [CdBr2(4,4'-dmbpy)(DMSO)] (Shirvan & Haydari Dezfuli, 2012b) (5,5'-dmbpy = 5,5'-dimethyl-2,2'-bipyridine, 4,4'-dmbpy = 4,4'-dimethyl-2,2'-bipyridine, DMSO = dimethyl sulfoxide). 6-Methyl-2,2'-bipyridine (6-mbipy) is a good ligand and a few complexes with 6-mbipy have been prepared, such as that of mercury (Ahmadi, Ebadi et al., 2008), platinum (Amani et al., 2009), lead (Ahmadi et al., 2009), palladium (Newkome et al., 1982), iron (Onggo et al., 1990), ruthenium (Onggo et al., 2005) and zinc (Ahmadi, Kalateh et al., 2008; Alizadeh et al., 2009; Kalateh et al., 2010). Here, we report the synthesis and structure of the title compound.

In the title compound (Fig. 1), the CdII atom is five-coordinated in a distorted trigonal-bipyramidal geometry by two N atoms from one 6-methyl-2,2'-bipyridine ligand, one O atom from one dimethyl sulfoxide ligand and two Br atoms. In the crystal, intermolecular C—H···Br hydrogen bonds (Table 1, Fig. 2) and π–π contacts between the pyridine rings, Cg2···Cg3i and Cg3···Cg3ii, with centroid–centroid distances of 3.582 (5) and 3.582 (5) Å [symmetry codes: (i) -x, -y, 1-z; (ii) 1-x, -y, 1-z. Cg2 and Cg3 are the centroids of the N1/C2–C6 and N2/C7–C11 rings], stabilize the structure.

Experimental

For the preparation of the title compound, a solution of 6-methyl-2,2'-bipyridine (0.23 g, 1.33 mmol) in methanol (10 ml) was added to a solution of CdBr2.4H2O (0.46 g, 1.33 mmol) in methanol (10 ml) at room temperature. Crystals suitable for X-ray diffraction experiment were obtained by methanol diffusion into a colorless solution in DMSO after one week (yield: 0.52 g, 75.1%).

Refinement

All H atoms were positioned geometrically and refined as riding atoms, with C—H = 0.93 (aromatic) and 0.96 (methyl) Å and with Uiso(H) = 1.2Ueq(C). The highest residual electron density was found at 0.58 Å from Cd1 atom and the deepest hole at 0.82 Å from Br1 atom.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound. Displacement ellipsoids are drawn at the 30% probability level.

Fig. 2.

Fig. 2.

Crystal packing diagram for the title compound. Hydrogen bonds are shown as dashed lines.

Crystal data

[CdBr2(C11H10N2)(C2H6OS)] F(000) = 1000
Mr = 520.56 Dx = 1.944 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 14429 reflections
a = 9.0169 (6) Å θ = 2.1–26.0°
b = 14.5503 (8) Å µ = 5.83 mm1
c = 14.1473 (8) Å T = 293 K
β = 106.561 (5)° Prism, colorless
V = 1779.11 (18) Å3 0.40 × 0.35 × 0.30 mm
Z = 4

Data collection

Bruker APEXII CCD diffractometer 3487 independent reflections
Radiation source: fine-focus sealed tube 2683 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.114
φ and ω scans θmax = 26.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2001) h = −11→11
Tmin = 0.070, Tmax = 0.240 k = −17→17
14429 measured reflections l = −17→17

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.175 H-atom parameters constrained
S = 1.05 w = 1/[σ2(Fo2) + (0.1108P)2 + 0.213P] where P = (Fo2 + 2Fc2)/3
3487 reflections (Δ/σ)max = 0.013
181 parameters Δρmax = 1.35 e Å3
0 restraints Δρmin = −1.58 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.0526 (15) 0.2406 (9) 0.7072 (8) 0.095 (3)
H1A 0.1571 0.2589 0.7393 0.113*
H1B 0.0242 0.1907 0.7429 0.113*
H1C −0.0157 0.2916 0.7054 0.113*
C2 0.0404 (10) 0.2109 (6) 0.6057 (7) 0.065 (2)
C3 −0.0649 (10) 0.2488 (7) 0.5244 (8) 0.076 (3)
H3 −0.1261 0.2979 0.5328 0.092*
C4 −0.0804 (11) 0.2160 (8) 0.4338 (9) 0.081 (3)
H4 −0.1515 0.2420 0.3794 0.098*
C5 0.0106 (10) 0.1432 (7) 0.4221 (7) 0.067 (2)
H5 0.0003 0.1189 0.3598 0.080*
C6 0.1172 (8) 0.1066 (5) 0.5039 (5) 0.0488 (16)
C7 0.2177 (8) 0.0275 (5) 0.4957 (5) 0.0489 (16)
C8 0.2191 (11) −0.0105 (7) 0.4065 (6) 0.068 (2)
H8 0.1547 0.0137 0.3484 0.081*
C9 0.3133 (12) −0.0828 (7) 0.4019 (8) 0.074 (3)
H9 0.3140 −0.1083 0.3417 0.089*
C10 0.4061 (11) −0.1164 (6) 0.4886 (8) 0.071 (2)
H10 0.4726 −0.1652 0.4884 0.085*
C11 0.4012 (10) −0.0778 (5) 0.5767 (7) 0.0589 (19)
H11 0.4628 −0.1025 0.6354 0.071*
C12 0.5881 (18) −0.1426 (8) 0.9498 (9) 0.107 (4)
H12A 0.6375 −0.1857 0.9173 0.129*
H12B 0.4818 −0.1598 0.9392 0.129*
H12C 0.6399 −0.1426 1.0193 0.129*
C13 0.7939 (16) −0.0279 (16) 0.9055 (11) 0.135 (6)
H13A 0.8121 0.0255 0.8706 0.162*
H13B 0.8204 −0.0821 0.8751 0.162*
H13C 0.8565 −0.0247 0.9728 0.162*
N1 0.1290 (7) 0.1384 (4) 0.5931 (5) 0.0517 (14)
N2 0.3111 (7) −0.0063 (4) 0.5802 (4) 0.0466 (13)
Cd1 0.31578 (6) 0.06461 (3) 0.72653 (4) 0.0479 (2)
Br1 0.49691 (15) 0.19974 (7) 0.79147 (9) 0.0879 (4)
Br2 0.14174 (14) −0.00070 (10) 0.82432 (8) 0.0931 (4)
O1 0.5147 (9) −0.0376 (5) 0.7936 (5) 0.0803 (19)
S1 0.5972 (3) −0.03236 (15) 0.90188 (15) 0.0594 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.116 (9) 0.091 (7) 0.083 (7) 0.038 (7) 0.039 (7) −0.005 (6)
C2 0.058 (5) 0.066 (5) 0.073 (5) 0.013 (4) 0.023 (4) 0.007 (4)
C3 0.059 (5) 0.075 (6) 0.100 (8) 0.024 (4) 0.031 (5) 0.027 (6)
C4 0.058 (5) 0.097 (7) 0.083 (7) 0.013 (5) 0.012 (5) 0.025 (6)
C5 0.061 (5) 0.078 (6) 0.058 (5) −0.001 (4) 0.012 (4) 0.009 (4)
C6 0.040 (3) 0.061 (4) 0.044 (4) −0.008 (3) 0.011 (3) 0.007 (3)
C7 0.039 (4) 0.057 (4) 0.053 (4) −0.008 (3) 0.018 (3) −0.002 (3)
C8 0.059 (5) 0.096 (7) 0.048 (4) −0.011 (5) 0.016 (4) −0.014 (4)
C9 0.074 (6) 0.086 (6) 0.069 (6) −0.009 (5) 0.030 (5) −0.031 (5)
C10 0.069 (5) 0.057 (5) 0.096 (7) −0.006 (4) 0.040 (5) −0.026 (5)
C11 0.061 (5) 0.043 (4) 0.076 (5) 0.002 (3) 0.024 (4) 0.000 (3)
C12 0.160 (13) 0.088 (8) 0.076 (7) −0.006 (8) 0.036 (8) 0.005 (6)
C13 0.080 (8) 0.24 (2) 0.086 (8) 0.027 (11) 0.026 (7) 0.010 (11)
N1 0.047 (3) 0.059 (4) 0.050 (3) 0.006 (3) 0.016 (3) 0.004 (3)
N2 0.048 (3) 0.050 (3) 0.045 (3) −0.007 (2) 0.017 (3) −0.005 (2)
Cd1 0.0532 (3) 0.0472 (3) 0.0421 (3) −0.0042 (2) 0.0116 (2) −0.0013 (2)
Br1 0.1072 (9) 0.0657 (6) 0.0866 (7) −0.0300 (5) 0.0210 (6) −0.0116 (5)
Br2 0.0902 (8) 0.1284 (10) 0.0644 (6) −0.0346 (7) 0.0277 (5) 0.0009 (6)
O1 0.092 (5) 0.075 (4) 0.057 (3) 0.029 (4) −0.006 (3) −0.006 (3)
S1 0.0658 (12) 0.0625 (11) 0.0515 (10) 0.0095 (9) 0.0194 (9) −0.0025 (9)

Geometric parameters (Å, º)

C1—C2 1.472 (14) C9—H9 0.9300
C1—H1A 0.9600 C10—C11 1.378 (13)
C1—H1B 0.9600 C10—H10 0.9300
C1—H1C 0.9600 C11—N2 1.329 (10)
C2—N1 1.365 (10) C11—H11 0.9300
C2—C3 1.381 (13) C12—S1 1.752 (12)
C3—C4 1.337 (15) C12—H12A 0.9600
C3—H3 0.9300 C12—H12B 0.9600
C4—C5 1.378 (14) C12—H12C 0.9600
C4—H4 0.9300 C13—S1 1.761 (14)
C5—C6 1.383 (11) C13—H13A 0.9600
C5—H5 0.9300 C13—H13B 0.9600
C6—N1 1.320 (10) C13—H13C 0.9600
C6—C7 1.489 (11) N1—Cd1 2.396 (6)
C7—N2 1.345 (10) N2—Cd1 2.303 (6)
C7—C8 1.380 (11) Cd1—O1 2.316 (6)
C8—C9 1.366 (14) Cd1—Br2 2.5530 (12)
C8—H8 0.9300 Cd1—Br1 2.5539 (11)
C9—C10 1.364 (15) O1—S1 1.502 (6)
C2—C1—H1A 109.5 N2—C11—H11 119.0
C2—C1—H1B 109.5 C10—C11—H11 119.0
H1A—C1—H1B 109.5 S1—C12—H12A 109.5
C2—C1—H1C 109.5 S1—C12—H12B 109.5
H1A—C1—H1C 109.5 H12A—C12—H12B 109.5
H1B—C1—H1C 109.5 S1—C12—H12C 109.5
N1—C2—C3 119.2 (9) H12A—C12—H12C 109.5
N1—C2—C1 118.1 (8) H12B—C12—H12C 109.5
C3—C2—C1 122.5 (9) S1—C13—H13A 109.5
C4—C3—C2 121.0 (9) S1—C13—H13B 109.5
C4—C3—H3 119.5 H13A—C13—H13B 109.5
C2—C3—H3 119.5 S1—C13—H13C 109.5
C3—C4—C5 119.1 (9) H13A—C13—H13C 109.5
C3—C4—H4 120.5 H13B—C13—H13C 109.5
C5—C4—H4 120.5 C6—N1—C2 120.4 (7)
C4—C5—C6 119.5 (9) C6—N1—Cd1 116.3 (5)
C4—C5—H5 120.3 C2—N1—Cd1 123.3 (6)
C6—C5—H5 120.3 C11—N2—C7 119.2 (7)
N1—C6—C5 120.7 (8) C11—N2—Cd1 122.0 (6)
N1—C6—C7 117.4 (6) C7—N2—Cd1 118.8 (5)
C5—C6—C7 121.8 (7) N2—Cd1—O1 83.9 (2)
N2—C7—C8 119.9 (8) N2—Cd1—N1 70.4 (2)
N2—C7—C6 117.0 (6) O1—Cd1—N1 154.1 (2)
C8—C7—C6 123.0 (8) N2—Cd1—Br2 117.63 (15)
C9—C8—C7 121.4 (9) O1—Cd1—Br2 93.6 (2)
C9—C8—H8 119.3 N1—Cd1—Br2 101.02 (15)
C7—C8—H8 119.3 N2—Cd1—Br1 120.97 (14)
C10—C9—C8 117.6 (8) O1—Cd1—Br1 90.3 (2)
C10—C9—H9 121.2 N1—Cd1—Br1 99.92 (16)
C8—C9—H9 121.2 Br2—Cd1—Br1 121.36 (4)
C9—C10—C11 119.9 (9) S1—O1—Cd1 119.1 (4)
C9—C10—H10 120.1 O1—S1—C12 106.5 (5)
C11—C10—H10 120.1 O1—S1—C13 103.5 (6)
N2—C11—C10 122.0 (9) C12—S1—C13 100.4 (9)
N1—C2—C3—C4 −0.5 (14) C6—C7—N2—C11 179.0 (6)
C1—C2—C3—C4 −175.4 (11) C8—C7—N2—Cd1 176.3 (6)
C2—C3—C4—C5 0.1 (16) C6—C7—N2—Cd1 −3.1 (8)
C3—C4—C5—C6 −1.0 (15) C11—N2—Cd1—O1 3.9 (6)
C4—C5—C6—N1 2.4 (13) C7—N2—Cd1—O1 −174.0 (5)
C4—C5—C6—C7 179.6 (8) C11—N2—Cd1—N1 −179.4 (6)
N1—C6—C7—N2 1.1 (10) C7—N2—Cd1—N1 2.7 (5)
C5—C6—C7—N2 −176.2 (7) C11—N2—Cd1—Br2 −87.0 (6)
N1—C6—C7—C8 −178.3 (7) C7—N2—Cd1—Br2 95.1 (5)
C5—C6—C7—C8 4.4 (11) C11—N2—Cd1—Br1 90.6 (6)
N2—C7—C8—C9 0.5 (12) C7—N2—Cd1—Br1 −87.3 (5)
C6—C7—C8—C9 179.8 (8) C6—N1—Cd1—N2 −2.1 (5)
C7—C8—C9—C10 0.0 (14) C2—N1—Cd1—N2 179.5 (7)
C8—C9—C10—C11 0.7 (14) C6—N1—Cd1—O1 5.5 (9)
C9—C10—C11—N2 −1.9 (13) C2—N1—Cd1—O1 −173.0 (7)
C5—C6—N1—C2 −2.8 (11) C6—N1—Cd1—Br2 −117.7 (5)
C7—C6—N1—C2 179.8 (7) C2—N1—Cd1—Br2 63.9 (6)
C5—C6—N1—Cd1 178.6 (6) C6—N1—Cd1—Br1 117.4 (5)
C7—C6—N1—Cd1 1.3 (8) C2—N1—Cd1—Br1 −61.1 (6)
C3—C2—N1—C6 1.9 (12) N2—Cd1—O1—S1 177.1 (5)
C1—C2—N1—C6 177.0 (9) N1—Cd1—O1—S1 169.9 (4)
C3—C2—N1—Cd1 −179.7 (6) Br2—Cd1—O1—S1 −65.5 (5)
C1—C2—N1—Cd1 −4.6 (12) Br1—Cd1—O1—S1 55.9 (5)
C10—C11—N2—C7 2.4 (11) Cd1—O1—S1—C12 126.0 (7)
C10—C11—N2—Cd1 −175.5 (6) Cd1—O1—S1—C13 −128.7 (9)
C8—C7—N2—C11 −1.6 (10)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C11—H11···O1 0.93 2.35 3.003 (12) 127
C13—H13C···Br2i 0.96 2.89 3.722 (15) 146

Symmetry code: (i) −x+1, −y, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HY2573).

References

  1. Ahmadi, R., Ebadi, A., Kalateh, K., Norouzi, A. & Amani, V. (2008). Acta Cryst. E64, m1407. [DOI] [PMC free article] [PubMed]
  2. Ahmadi, R., Kalateh, K., Alizadeh, R., Khoshtarkib, Z. & Amani, V. (2009). Acta Cryst. E65, m1169–m1170. [DOI] [PMC free article] [PubMed]
  3. Ahmadi, R., Kalateh, K., Ebadi, A., Amani, V. & Khavasi, H. R. (2008). Acta Cryst. E64, m1266. [DOI] [PMC free article] [PubMed]
  4. Alizadeh, R., Khoshtarkib, Z., Chegeni, K., Ebadi, A. & Amani, V. (2009). Acta Cryst. E65, m1311. [DOI] [PMC free article] [PubMed]
  5. Amani, V., Safari, N., Khavasi, H. R. & Akkurt, M. (2009). Polyhedron, 28, 3026–3030.
  6. Bruker (2001). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  7. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  8. Kalateh, K., Ahmadi, R. & Amani, V. (2010). Acta Cryst. E66, m1241. [DOI] [PMC free article] [PubMed]
  9. Newkome, G. R., Fronczek, F. R., Gupta, V. K., Puckett, W. E., Pantaleo, D. C. & Kiefer, G. E. (1982). J. Am. Chem. Soc. 104, 1782–1783.
  10. Onggo, D., Hook, J. M., Rae, A. D. & Goodwin, H. A. (1990). Inorg. Chim. Acta, 173, 19–30.
  11. Onggo, D., Scudder, M. L., Craig, D. C. & Goodwin, H. A. (2005). J. Mol. Struct. 738, 129–136.
  12. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  13. Shirvan, S. A. & Haydari Dezfuli, S. (2012a). Acta Cryst. E68, m846. [DOI] [PMC free article] [PubMed]
  14. Shirvan, S. A. & Haydari Dezfuli, S. (2012b). Acta Cryst. E68, m1006–m1007. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812033168/hy2573sup1.cif

e-68-m1124-sup1.cif (18.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033168/hy2573Isup2.hkl

e-68-m1124-Isup2.hkl (171KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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