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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jul 7;68(Pt 8):o2371–o2372. doi: 10.1107/S1600536812030243

(Z)-3-(2-Hy­droxy­eth­yl)-2-(phenyl­imino)-1,3-thia­zolidin-4-one

Shaaban K Mohamed a, Antar A Abdelhamid a, Sabry H H Younes b, Mahmoud A A Elremaily b, Jim Simpson c,*
PMCID: PMC3414302  PMID: 22904835

Abstract

In the title compound, C11H12N2O2S, the thia­zole and phenyl rings are inclined at 56.99 (6)° to one another. The thia­zole ring is planar with an r.m.s. deviation for the five ring atoms of 0.0274 Å. The presence of the phenyl­imine substituent is confirmed with the C=N distance to the thia­zole ring of 1.2638 (19) Å. The mol­ecule adopts a Z conformation with respect to this bond. The –OH group of the hy­droxy­ethyl substituent is disordered over two positions with relative occupancies 0.517 (4) and 0.483 (4). In the crystal, O—H⋯O hydrogen bonds, augmented by C—H⋯N contacts, form dimers with R 2 2(11) rings and generate chains along the b axis. Parallel chains are linked in an obverse fashion by weak C—H⋯S hydrogen bonds. C—H⋯O hydrogen bonds together with C—H⋯π contacts further consolidate the structure, stacking mol­ecules along the b axis.

Related literature  

For pharmaceutical background to thia­zolidinone compounds, see: Shah & Desai (2007); Subudhi et al. (2007); Kuecuekguezel et al. (2006); Mehta et al. (2006); Srivastava et al. (2006); Zhou et al. (2008). For our recent work on the synthesis of bio-selective mol­ecules, see: Mohamed et al. (2012). For related structures, see: Bally & Mornon (1973); Moghaddam & Hojabri (2007); Yella et al. (2008); Abdel-Aziz et al. (2012). For standard bond distances, see: Allen et al. (1987). For hydrogen-bond motifs, see: Bernstein et al. (1995).graphic file with name e-68-o2371-scheme1.jpg

Experimental  

Crystal data  

  • C11H12N2O2S

  • M r = 236.29

  • Monoclinic, Inline graphic

  • a = 11.9612 (6) Å

  • b = 6.9478 (3) Å

  • c = 13.1554 (6) Å

  • β = 91.244 (2)°

  • V = 1093.01 (9) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.28 mm−1

  • T = 91 K

  • 0.40 × 0.26 × 0.11 mm

Data collection  

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2011) T min = 0.693, T max = 0.746

  • 17811 measured reflections

  • 2547 independent reflections

  • 2150 reflections with I > 2σ(I)

  • R int = 0.038

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.041

  • wR(F 2) = 0.100

  • S = 1.08

  • 2547 reflections

  • 157 parameters

  • 6 restraints

  • H-atom parameters constrained

  • Δρmax = 0.79 e Å−3

  • Δρmin = −0.68 e Å−3

Data collection: APEX2 (Bruker, 2011); cell refinement: APEX2 and SAINT (Bruker, 2011); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008) and TITAN (Hunter & Simpson, 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) and TITAN; molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97, enCIFer (Allen et al., 2004), PLATON (Spek, 2009) and publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812030243/tk5126sup1.cif

e-68-o2371-sup1.cif (20KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812030243/tk5126Isup2.hkl

e-68-o2371-Isup2.hkl (125.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812030243/tk5126Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg2 is the centroid of the C6–C11 phenyl ring.

D—H⋯A D—H H⋯A DA D—H⋯A
O2—H2⋯O1i 0.84 1.98 2.802 (3) 168
C13—H13B⋯O1ii 0.99 2.67 3.407 (3) 131
C1—H1A⋯O1iii 0.99 2.56 3.472 (3) 153
C12—H12B⋯S1iv 0.99 2.92 3.613 (2) 128
C1—H1B⋯N5v 0.99 2.57 3.519 (3) 162
C9—H9⋯Cg2vi 0.95 2.77 3.5731 (16) 142

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic; (vi) Inline graphic.

Acknowledgments

The financial support of the Egyptian Higher Education authority is gratefully acknowledged. We extend also our thanks to Manchester Metropolitan University for supporting this study and the University of Otago for the purchase of the diffractometer.

supplementary crystallographic information

Comment

Compounds incorporating the thiazolidinone core structure are of great interest to chemists and biologists due to their extensive bioactivities (Shah & Desai, 2007). These include anti-microbial (Subudhi et al., 2007), anti-mycobacterial (Kuecuekguezel et al., 2006), anti-inflammatory (Srivastava et al., 2006), anti-fungal (Mehta et al., 2006) and anti-cancer effects (Zhou et al., 2008). In this context and following our on-going study of the synthesis of bio-selective molecules we were interested in investigating the microbial inhibiting effect of a newly synthesized series of compounds incorporating thiazolidinone ring systems. The synthesis of such compounds was carried out via a three component reaction technique using amino alcohols as precursors (Mohamed et al., 2012). In this study, the crystal structure determination of the title compound (I) was undertaken to investigate the relationship between its structure and anti-bacterial activity.

The title compound (I), a phenylimino-thiazolidinone derivative, crystallizes with the S1/C1/C2/N1/C4 thiazole and C6···C11 phenyl rings inclined at 56.99 (6) ° to one another. The thiazole ring is planar with an r.m.s. deviation for the five ring atoms of 0.0274 Å. The C4═N5 distance, 1.2638 (19) Å, confirms this as a double bond and the molecule adopts a Z conformation with respect to this bond. The OH group of the hydroxyethyl substituent is disordered over two positions with relative occupancies 0.517 (4) for O2–H2 and 0.483 (4) for O3–H3. Bond distances (Allen et al., 1987) and angles in the molecule are normal and similar to those found in related structures (Bally & Mornon, 1973; Moghaddam & Hojabri, 2007; Yella et al., 2008; Abdel-Aziz et al., 2012).

In the crystal structure head to tail dimers are formed from O2–H2···O1 hydrogen bonds, bolstered by weaker C1–H1B···N1 interactions, Table 1, forming R22(11) rings (Bernstein et al., 1995). These also link pairs of molecules into chains along b. Weak C12–H1B···S1 contacts join each chain to an equivalent one progressing in the opposite direction, Fig. 2. Two additional C–H···O hydrogen bonds together with C9–H9···π contacts further consolidate the structure forming stacks along b, Fig. 3.

Experimental

To a well stirred mixture of 135 mg (1 mmol) phenylisothiocyanate and 61 mg (1 mmol) 2-aminoethanol in 50 ml dioxane, 167 mg (1 mmol) of bromo ethylacetate was added. The reaction mixture was refluxed and monitored by TLC until completion after 3 h. A solid product was deposited on cooling to room temperature and collected by filtration. The crude product was recrystallized from ethanol to give a high quality crystals (M.p. 327 K) suitable for X-ray analysis in an excellent yield (92%).

Refinement

The OH group of the hydroxyethyl substituent is disordered over two positions O2 and O3 with relative occupancies that converged to 0.517 (4) and 0.483 (4). Displacement parameters for the C13 atom bound to the disordered OH groups were slightly higher than normal but a suitable additional disorder model could not be found. All H-atoms bound to carbon were refined using a riding model with d(C—H) = 0.95 Å for aromatic and 0.99 Å for CH2 H atoms, and with Uiso = 1.2Ueq (C). For the disordered O—H atoms d(O—H) = 0.84 Å, with Uiso = 1.5Ueq (O).

Figures

Fig. 1.

Fig. 1.

The structure of I with ellipsoids drawn at the 50% probability level. Only the major disorder component is shown.

Fig. 2.

Fig. 2.

A view of the packing along the a axis showing chains of molecules linked by C–H···S hydrogen bonds. Hydrogen bonds are drawn as dashed lines and only the major disorder component is shown.

Fig. 3.

Fig. 3.

Overall packing for (1) viewed along the b axis showing a representative C–H···π contact as a dotted line. The red sphere represents the centroid of the C6···C11 phenyl ring. Hydrogen bonds are drawn as dashed lines and only the major disorder component is shown.

Crystal data

C11H12N2O2S F(000) = 496
Mr = 236.29 Dx = 1.436 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 5327 reflections
a = 11.9612 (6) Å θ = 3.3–27.6°
b = 6.9478 (3) Å µ = 0.28 mm1
c = 13.1554 (6) Å T = 91 K
β = 91.244 (2)° Irregular block, yellow
V = 1093.01 (9) Å3 0.40 × 0.26 × 0.11 mm
Z = 4

Data collection

Bruker APEXII CCD area-detector diffractometer 2547 independent reflections
Radiation source: fine-focus sealed tube 2150 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.038
φ and ω scans θmax = 27.7°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2011) h = −15→15
Tmin = 0.693, Tmax = 0.746 k = −9→9
17811 measured reflections l = −17→15

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100 H-atom parameters constrained
S = 1.08 w = 1/[σ2(Fo2) + (0.0373P)2 + 0.9645P] where P = (Fo2 + 2Fc2)/3
2547 reflections (Δ/σ)max < 0.001
157 parameters Δρmax = 0.79 e Å3
6 restraints Δρmin = −0.68 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
S1 0.27696 (4) 0.19764 (7) 0.90742 (4) 0.02132 (14)
C1 0.18673 (18) 0.0254 (3) 0.96766 (16) 0.0261 (4)
H1A 0.1232 −0.0083 0.9216 0.031*
H1B 0.2287 −0.0937 0.9843 0.031*
C2 0.14480 (17) 0.1172 (3) 1.06312 (15) 0.0248 (4)
O1 0.08555 (15) 0.0341 (2) 1.12382 (12) 0.0393 (4)
N1 0.17971 (13) 0.3030 (2) 1.07448 (12) 0.0204 (3)
C4 0.24668 (14) 0.3775 (3) 0.99792 (13) 0.0172 (4)
N5 0.28128 (12) 0.5494 (2) 1.00068 (11) 0.0180 (3)
C6 0.34388 (14) 0.6235 (3) 0.91831 (14) 0.0171 (4)
C7 0.29991 (15) 0.6270 (3) 0.81901 (14) 0.0196 (4)
H7 0.2298 0.5682 0.8039 0.023*
C8 0.35896 (16) 0.7167 (3) 0.74242 (15) 0.0213 (4)
H8 0.3292 0.7179 0.6749 0.026*
C9 0.46134 (17) 0.8049 (3) 0.76381 (15) 0.0234 (4)
H9 0.5014 0.8661 0.7113 0.028*
C10 0.50430 (16) 0.8025 (3) 0.86274 (15) 0.0233 (4)
H10 0.5742 0.8623 0.8777 0.028*
C11 0.44593 (15) 0.7135 (3) 0.94010 (14) 0.0201 (4)
H11 0.4755 0.7139 1.0077 0.024*
C12 0.14901 (17) 0.4171 (3) 1.16360 (15) 0.0255 (4)
H12A 0.2113 0.5057 1.1812 0.031*
H12B 0.1393 0.3292 1.2220 0.031*
C13 0.0447 (2) 0.5319 (4) 1.14846 (19) 0.0439 (6)
H13A −0.0167 0.4364 1.1469 0.053*
H13B 0.0363 0.6054 1.2123 0.053*
O2 0.0188 (2) 0.6593 (4) 1.0724 (2) 0.0241 (8) 0.517 (4)
H2 0.0483 0.7663 1.0856 0.036* 0.517 (4)
O3 −0.0418 (2) 0.4527 (5) 1.1267 (2) 0.0316 (9) 0.483 (4)
H3 −0.0409 0.4168 1.0658 0.047* 0.483 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0221 (2) 0.0226 (3) 0.0195 (2) 0.00206 (18) 0.00538 (17) −0.00315 (18)
C1 0.0326 (10) 0.0206 (10) 0.0254 (10) −0.0003 (8) 0.0066 (8) −0.0018 (8)
C2 0.0280 (10) 0.0244 (10) 0.0221 (10) −0.0040 (8) 0.0038 (8) −0.0013 (8)
O1 0.0548 (10) 0.0346 (9) 0.0292 (8) −0.0195 (8) 0.0170 (7) −0.0056 (7)
N1 0.0211 (8) 0.0236 (8) 0.0166 (8) −0.0037 (6) 0.0043 (6) −0.0034 (6)
C4 0.0140 (8) 0.0230 (9) 0.0146 (8) 0.0029 (7) −0.0001 (6) −0.0010 (7)
N5 0.0161 (7) 0.0229 (8) 0.0150 (7) 0.0014 (6) 0.0010 (6) −0.0006 (6)
C6 0.0181 (8) 0.0163 (8) 0.0170 (9) 0.0037 (7) 0.0029 (7) −0.0007 (7)
C7 0.0197 (8) 0.0203 (9) 0.0187 (9) 0.0040 (7) 0.0008 (7) −0.0016 (7)
C8 0.0280 (9) 0.0186 (9) 0.0172 (9) 0.0058 (7) 0.0014 (7) 0.0014 (7)
C9 0.0302 (10) 0.0182 (9) 0.0220 (10) 0.0017 (8) 0.0066 (8) 0.0043 (8)
C10 0.0221 (9) 0.0205 (9) 0.0272 (10) −0.0028 (7) 0.0018 (8) 0.0020 (8)
C11 0.0223 (9) 0.0191 (9) 0.0187 (9) 0.0009 (7) −0.0014 (7) 0.0013 (7)
C12 0.0322 (10) 0.0290 (10) 0.0157 (9) −0.0098 (8) 0.0084 (8) −0.0067 (8)
C13 0.0564 (10) 0.0410 (10) 0.0346 (9) 0.0164 (8) 0.0045 (8) −0.0037 (8)
O2 0.0295 (15) 0.0209 (14) 0.0217 (15) −0.0021 (11) −0.0001 (11) −0.0017 (11)
O3 0.0208 (15) 0.054 (2) 0.0197 (16) 0.0020 (14) 0.0030 (11) −0.0044 (15)

Geometric parameters (Å, º)

S1—C4 1.7689 (19) C8—H8 0.9500
S1—C1 1.806 (2) C9—C10 1.389 (3)
C1—C2 1.504 (3) C9—H9 0.9500
C1—H1A 0.9900 C10—C11 1.392 (3)
C1—H1B 0.9900 C10—H10 0.9500
C2—O1 1.224 (2) C11—H11 0.9500
C2—N1 1.364 (3) C12—C13 1.490 (3)
N1—C4 1.400 (2) C12—H12A 0.9900
N1—C12 1.469 (2) C12—H12B 0.9900
C4—N5 1.264 (2) C13—O3 1.202 (4)
N5—C6 1.427 (2) C13—O2 1.367 (4)
C6—C11 1.396 (3) C13—H13A 0.9900
C6—C7 1.398 (3) C13—H13B 0.9900
C7—C8 1.391 (3) O2—H2 0.8400
C7—H7 0.9500 O3—H3 0.8400
C8—C9 1.393 (3)
C4—S1—C1 92.29 (9) C10—C9—C8 119.34 (18)
C2—C1—S1 107.38 (14) C10—C9—H9 120.3
C2—C1—H1A 110.2 C8—C9—H9 120.3
S1—C1—H1A 110.2 C9—C10—C11 120.61 (18)
C2—C1—H1B 110.2 C9—C10—H10 119.7
S1—C1—H1B 110.2 C11—C10—H10 119.7
H1A—C1—H1B 108.5 C10—C11—C6 119.96 (17)
O1—C2—N1 123.72 (18) C10—C11—H11 120.0
O1—C2—C1 123.58 (19) C6—C11—H11 120.0
N1—C2—C1 112.69 (17) N1—C12—C13 113.91 (18)
C2—N1—C4 116.73 (16) N1—C12—H12A 108.8
C2—N1—C12 121.13 (16) C13—C12—H12A 108.8
C4—N1—C12 122.13 (16) N1—C12—H12B 108.8
N5—C4—N1 121.38 (16) C13—C12—H12B 108.8
N5—C4—S1 127.96 (14) H12A—C12—H12B 107.7
N1—C4—S1 110.59 (13) O3—C13—O2 86.7 (3)
C4—N5—C6 119.74 (16) O3—C13—C12 120.0 (3)
C11—C6—C7 119.60 (17) O2—C13—C12 128.4 (2)
C11—C6—N5 118.48 (16) O2—C13—H13A 105.2
C7—C6—N5 121.54 (16) C12—C13—H13A 105.2
C8—C7—C6 119.88 (17) O3—C13—H13B 109.6
C8—C7—H7 120.1 O2—C13—H13B 105.2
C6—C7—H7 120.1 C12—C13—H13B 105.2
C7—C8—C9 120.61 (18) H13A—C13—H13B 105.9
C7—C8—H8 119.7 C13—O2—H2 109.5
C9—C8—H8 119.7 C13—O3—H3 109.5

Hydrogen-bond geometry (Å, º)

Cg2 is the centroid of the C6–C11 phenyl ring.

D—H···A D—H H···A D···A D—H···A
O2—H2···O1i 0.84 1.98 2.802 (3) 168
C13—H13B···O1ii 0.99 2.67 3.407 (3) 131
C1—H1A···O1iii 0.99 2.56 3.472 (3) 153
C12—H12B···S1iv 0.99 2.92 3.613 (2) 128
C1—H1B···N5v 0.99 2.57 3.519 (3) 162
C9—H9···Cg2vi 0.95 2.77 3.5731 (16) 142

Symmetry codes: (i) x, y+1, z; (ii) −x, y+1/2, −z+5/2; (iii) −x, −y, −z+2; (iv) x, −y+1/2, z+1/2; (v) x, y−1, z; (vi) −x+1, y−1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK5126).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812030243/tk5126sup1.cif

e-68-o2371-sup1.cif (20KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812030243/tk5126Isup2.hkl

e-68-o2371-Isup2.hkl (125.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812030243/tk5126Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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