Abstract
In the title compound, C15H10FNO3, the dihedral angle between the isoindoline-1,3-dione and 3-fluoro-4-methylphenol groups is 86.88 (8)°. The isoindoline-1,3-dione fragment is almost planar, with an r.m.s. deviation of 0.0154 Å within the group. Intermolecular C—H⋯O hydrogen bonds generate C(6) chains running parallel to the [010] direction.
Related literature
For background to indoline-1,3-dione and its derivatives, see: Raza et al. (2010 ▶). For discussion of the broad spectrum of properties of these compounds, see: Bhattacharya & Chakrabarti (1998 ▶). For discussion of their anti-inflammatory properties, see: Sridhar & Ramesh (2001 ▶). For discussion of their anxiogenic activities, see: Medvedev et al. (1996 ▶). For related structures, see: Asad et al. (2012 ▶); Fu et al. (2010 ▶). For classification of hydrogen-bonding patterns, see: Bernstein et al. (1995 ▶).
Experimental
Crystal data
C15H10FNO3
M r = 271.24
Monoclinic,
a = 12.4362 (7) Å
b = 13.8189 (8) Å
c = 7.2376 (4) Å
β = 105.784 (6)°
V = 1196.92 (12) Å3
Z = 4
Mo Kα radiation
μ = 0.12 mm−1
T = 296 K
0.49 × 0.36 × 0.16 mm
Data collection
Refinement
R[F 2 > 2σ(F 2)] = 0.057
wR(F 2) = 0.141
S = 1.04
2475 reflections
182 parameters
1 restraint
H-atom parameters constrained
Δρmax = 0.27 e Å−3
Δρmin = −0.25 e Å−3
Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812029923/mw2073sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029923/mw2073Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812029923/mw2073Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
O1—H1⋯F1i | 0.82 | 2.52 | 3.267 (2) | 152 |
C2—H6⋯O2ii | 0.93 | 2.51 | 3.303 (3) | 144 |
C12—H12⋯O2iii | 0.93 | 2.51 | 3.403 (3) | 161 |
C15—H15⋯O3iv | 0.93 | 2.47 | 3.346 (3) | 157 |
Symmetry codes: (i) ; (ii)
; (iii)
; (iv)
.
Acknowledgments
The authors acknowledge the Faculty of Arts and Sciences of Dokuz Eylul University, Turkey, for the use of the Agilent Xcalibur Eos diffractometer (purchased under University Research grant No. 2010.KB.FEN.13).
supplementary crystallographic information
Comment
Indoline-2,3-dione and its derivatives are well known for their broad spectrum properties including anticonvulsant (Bhattacharya & Chakrabarti, 1998), anti-inflammatory (Sridhar & Ramesh, 2001) and anxiogenic (Medvedev et al., 1996) activities. On the other hand, dithiocarbamates also show a large range of biological activities for example fungicidal (Ozkirimli et al., 2005) and antitumor activities (Cao et al., 2005; Gaspari et al., 2006).
As an extension of the work on the structural characterization of indoline-2,3-dione derivatives, the crystal structure of the title compound is reported here. The isoindoline-1,3-dione fragment is almost planar with an r.m.s. deviation of 0.0154 Å within the group. This unit makes a dihedral angle of 86.88 (8)° with the benzene ring.
The F1—C4 bond length of 1.349 (3) Å agrees with the corresponding distance in 9-(7-fluoro-4-oxo-4H-chromen-3-yl)-3,3,6,6-tetramethyl-2,3,4,5,6, 7,8,9-octahydro-1H-xanthene-1,8-dione [1.349 (2) Å (Asad et al., 2012)]. The C═O bond lengths are 1.205 (3) Å for C8═O2 and C11═O3 which are similar to the corresponding values found in 2-(2-oxothiolan-3-yl)isoindoline-1,3-dione [1.202 (5) Å and 1.207 (5) Å (Raza et al., 2010)].
The molecules are linked into sheets by a combination of C—H···O and O—H···F interactions (Table 1). C(6) chains along [010] are created by pairwise C12—H12···O2 and C15—H15···O3 hydrogen bond interactions. The combination of the C(6) chains generates chain edge-fused R22(10) rings running along [010]. C(6) chains along [001] are formed by O1—H1···F1 hydrogen bond interactions (Fig.2).
Experimental
The compound 2-(2-fluoro-4-hydroxybenzyl)-1H-isoindole-1,3(2H)-dione was prepared by combining solutions of 2-hydroxy-1H-isoindole-1,3(2H)-dione (0.011 g 0.067 mmol) in 20 ml of ethanol and 1-(2,4-difluorophenyl)methanamine (0.009 g, 0.067 mmol) in 20 ml of ethanol and refluxing the resulting mixture for 1 h with stirring. Crystals of 2-(2-fluoro-4-hydroxybenzyl)-1H-isoindole-1,3(2H)-dione suitable for X-ray analysis were obtained from ethyl alcohol by slow evaporation (yield 72%; m.p. 155–158°C).
Refinement
The H1 atom was located in a difference map and the O—H distance adjusted to 0.82 (2) Å while the other H atoms were placed in calculated positions. All were constrained to ride on their parent atoms, with C—H = 0.93–0.97 Å and Uiso(H) = 1.2Ueq(C,O).
Figures
Fig. 1.
The molecular structure of the title compound, showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.
Fig. 2.
Crystal packing, viewed along the b axis,of the title compound. The C—H···O and O—H···F interactions are shown as dashed lines (see Table 1 for details).
Crystal data
C15H10FNO3 | F(000) = 560 |
Mr = 271.24 | Dx = 1.505 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P2ybc | Cell parameters from 1089 reflections |
a = 12.4362 (7) Å | θ = 3.3–29.3° |
b = 13.8189 (8) Å | µ = 0.12 mm−1 |
c = 7.2376 (4) Å | T = 296 K |
β = 105.784 (6)° | Plate, yellow |
V = 1196.92 (12) Å3 | 0.49 × 0.36 × 0.16 mm |
Z = 4 |
Data collection
Agilent Xcalibur Eos diffractometer | 2475 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 1455 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
Detector resolution: 16.1333 pixels mm-1 | θmax = 26.5°, θmin = 3.3° |
ω scans | h = −15→15 |
Absorption correction: analytical [CrysAlis PRO (Agilent, 2012) and Clark & Reid (1995)] | k = −10→17 |
Tmin = 0.977, Tmax = 0.995 | l = −9→9 |
6558 measured reflections |
Refinement
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.057 | H-atom parameters constrained |
wR(F2) = 0.141 | w = 1/[σ2(Fo2) + (0.0576P)2 + 0.052P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
2475 reflections | Δρmax = 0.27 e Å−3 |
182 parameters | Δρmin = −0.25 e Å−3 |
1 restraint | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.015 (2) |
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
F1 | 0.51132 (13) | 0.39770 (13) | 0.2014 (2) | 0.0744 (5) | |
O1 | 0.62844 (14) | 0.34620 (14) | 0.8605 (2) | 0.0669 (6) | |
H1 | 0.6025 | 0.3378 | 0.9521 | 0.100* | |
O2 | 0.14305 (15) | 0.22946 (14) | 0.1784 (3) | 0.0688 (6) | |
O3 | 0.15474 (15) | 0.55595 (13) | 0.2472 (2) | 0.0640 (6) | |
C1 | 0.4371 (2) | 0.3540 (2) | 0.7088 (4) | 0.0587 (7) | |
H2 | 0.4209 | 0.3437 | 0.8253 | 0.070* | |
C2 | 0.3525 (2) | 0.36576 (18) | 0.5413 (4) | 0.0512 (7) | |
H6 | 0.2786 | 0.3635 | 0.5460 | 0.061* | |
C3 | 0.37512 (19) | 0.38080 (16) | 0.3672 (3) | 0.0432 (6) | |
C4 | 0.4864 (2) | 0.38324 (18) | 0.3694 (3) | 0.0489 (6) | |
C5 | 0.5730 (2) | 0.37230 (18) | 0.5324 (4) | 0.0555 (7) | |
H3 | 0.6472 | 0.3745 | 0.5292 | 0.067* | |
C6 | 0.5443 (2) | 0.35796 (19) | 0.6992 (4) | 0.0573 (7) | |
C7 | 0.2863 (2) | 0.39461 (19) | 0.1803 (3) | 0.0513 (7) | |
H7A | 0.2988 | 0.4560 | 0.1244 | 0.062* | |
H7B | 0.2934 | 0.3438 | 0.0920 | 0.062* | |
C8 | 0.1105 (2) | 0.31010 (19) | 0.1968 (4) | 0.0486 (7) | |
C9 | 0.00117 (19) | 0.34221 (18) | 0.2184 (3) | 0.0443 (6) | |
C10 | 0.00446 (19) | 0.44188 (18) | 0.2373 (3) | 0.0423 (6) | |
C11 | 0.1162 (2) | 0.47537 (19) | 0.2301 (3) | 0.0464 (6) | |
C12 | −0.0859 (2) | 0.4927 (2) | 0.2606 (3) | 0.0536 (7) | |
H12 | −0.0835 | 0.5596 | 0.2748 | 0.064* | |
C13 | −0.1802 (2) | 0.4405 (2) | 0.2620 (3) | 0.0603 (8) | |
H13 | −0.2430 | 0.4731 | 0.2756 | 0.072* | |
C14 | −0.1837 (2) | 0.3410 (2) | 0.2438 (4) | 0.0602 (8) | |
H14 | −0.2484 | 0.3079 | 0.2460 | 0.072* | |
C15 | −0.0921 (2) | 0.2898 (2) | 0.2221 (4) | 0.0553 (7) | |
H15 | −0.0937 | 0.2228 | 0.2107 | 0.066* | |
N1 | 0.17380 (16) | 0.39322 (15) | 0.2016 (3) | 0.0475 (5) |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.0609 (10) | 0.1071 (14) | 0.0657 (9) | −0.0106 (9) | 0.0350 (8) | −0.0019 (9) |
O1 | 0.0467 (11) | 0.0929 (15) | 0.0528 (9) | −0.0076 (10) | −0.0006 (7) | 0.0201 (10) |
O2 | 0.0605 (13) | 0.0456 (12) | 0.1070 (15) | 0.0039 (10) | 0.0341 (11) | −0.0083 (11) |
O3 | 0.0674 (13) | 0.0437 (11) | 0.0819 (13) | −0.0074 (10) | 0.0220 (10) | −0.0014 (10) |
C1 | 0.0578 (18) | 0.0648 (18) | 0.0557 (16) | −0.0048 (15) | 0.0195 (13) | 0.0081 (14) |
C2 | 0.0432 (15) | 0.0527 (16) | 0.0620 (16) | −0.0025 (12) | 0.0217 (12) | 0.0039 (13) |
C3 | 0.0406 (14) | 0.0352 (13) | 0.0560 (14) | −0.0028 (11) | 0.0168 (11) | −0.0023 (11) |
C4 | 0.0478 (16) | 0.0486 (16) | 0.0568 (15) | −0.0043 (13) | 0.0253 (13) | −0.0021 (12) |
C5 | 0.0404 (15) | 0.0561 (18) | 0.0729 (18) | −0.0019 (13) | 0.0201 (14) | 0.0016 (14) |
C6 | 0.0463 (16) | 0.0572 (17) | 0.0596 (15) | −0.0028 (13) | −0.0008 (10) | 0.0059 (14) |
C7 | 0.0428 (14) | 0.0555 (16) | 0.0582 (14) | −0.0021 (13) | 0.0182 (12) | 0.0023 (13) |
C8 | 0.0467 (16) | 0.0416 (16) | 0.0569 (15) | −0.0002 (13) | 0.0132 (12) | −0.0039 (12) |
C9 | 0.0415 (15) | 0.0431 (15) | 0.0461 (13) | 0.0022 (12) | 0.0084 (11) | −0.0006 (12) |
C10 | 0.0400 (15) | 0.0453 (15) | 0.0389 (12) | 0.0038 (12) | 0.0061 (10) | −0.0012 (11) |
C11 | 0.0489 (16) | 0.0408 (16) | 0.0465 (13) | −0.0005 (13) | 0.0078 (11) | 0.0014 (12) |
C12 | 0.0541 (17) | 0.0522 (16) | 0.0524 (14) | 0.0086 (14) | 0.0108 (12) | −0.0037 (13) |
C13 | 0.0474 (17) | 0.075 (2) | 0.0585 (15) | 0.0138 (16) | 0.0148 (13) | −0.0021 (15) |
C14 | 0.0421 (16) | 0.076 (2) | 0.0631 (16) | −0.0033 (15) | 0.0163 (13) | −0.0001 (15) |
C15 | 0.0466 (16) | 0.0528 (16) | 0.0664 (16) | −0.0080 (14) | 0.0153 (13) | −0.0047 (14) |
N1 | 0.0387 (12) | 0.0445 (12) | 0.0589 (12) | 0.0009 (10) | 0.0126 (10) | −0.0005 (10) |
Geometric parameters (Å, º)
F1—C4 | 1.349 (3) | C7—H7A | 0.9700 |
O1—C6 | 1.349 (3) | C7—H7B | 0.9700 |
O1—H1 | 0.8200 | C8—N1 | 1.388 (3) |
O2—C8 | 1.205 (3) | C8—C9 | 1.478 (3) |
O3—C11 | 1.205 (3) | C9—C15 | 1.374 (3) |
C1—C6 | 1.354 (4) | C9—C10 | 1.384 (3) |
C1—C2 | 1.382 (3) | C10—C12 | 1.373 (3) |
C1—H2 | 0.9300 | C10—C11 | 1.479 (3) |
C2—C3 | 1.379 (3) | C11—N1 | 1.388 (3) |
C2—H6 | 0.9300 | C12—C13 | 1.380 (4) |
C3—C4 | 1.380 (3) | C12—H12 | 0.9300 |
C3—C7 | 1.508 (3) | C13—C14 | 1.380 (4) |
C4—C5 | 1.372 (3) | C13—H13 | 0.9300 |
C5—C6 | 1.364 (4) | C14—C15 | 1.385 (4) |
C5—H3 | 0.9300 | C14—H14 | 0.9300 |
C7—N1 | 1.449 (3) | C15—H15 | 0.9300 |
C6—O1—H1 | 109.5 | O2—C8—C9 | 129.5 (2) |
C6—C1—C2 | 118.4 (2) | N1—C8—C9 | 106.3 (2) |
C6—C1—H2 | 120.8 | C15—C9—C10 | 121.7 (2) |
C2—C1—H2 | 120.8 | C15—C9—C8 | 130.5 (2) |
C3—C2—C1 | 121.5 (2) | C10—C9—C8 | 107.8 (2) |
C3—C2—H6 | 119.2 | C12—C10—C9 | 121.2 (2) |
C1—C2—H6 | 119.2 | C12—C10—C11 | 130.7 (2) |
C2—C3—C4 | 116.5 (2) | C9—C10—C11 | 108.1 (2) |
C2—C3—C7 | 123.9 (2) | O3—C11—N1 | 124.3 (2) |
C4—C3—C7 | 119.6 (2) | O3—C11—C10 | 129.6 (2) |
F1—C4—C5 | 118.2 (2) | N1—C11—C10 | 106.1 (2) |
F1—C4—C3 | 118.0 (2) | C10—C12—C13 | 117.3 (3) |
C5—C4—C3 | 123.9 (2) | C10—C12—H12 | 121.3 |
C6—C5—C4 | 116.3 (2) | C13—C12—H12 | 121.3 |
C6—C5—H3 | 121.8 | C12—C13—C14 | 121.6 (3) |
C4—C5—H3 | 121.8 | C12—C13—H13 | 119.2 |
O1—C6—C1 | 119.6 (3) | C14—C13—H13 | 119.2 |
O1—C6—C5 | 117.1 (3) | C13—C14—C15 | 120.9 (3) |
C1—C6—C5 | 123.3 (2) | C13—C14—H14 | 119.5 |
N1—C7—C3 | 113.3 (2) | C15—C14—H14 | 119.5 |
N1—C7—H7A | 108.9 | C9—C15—C14 | 117.2 (3) |
C3—C7—H7A | 108.9 | C9—C15—H15 | 121.4 |
N1—C7—H7B | 108.9 | C14—C15—H15 | 121.4 |
C3—C7—H7B | 108.9 | C11—N1—C8 | 111.6 (2) |
H7A—C7—H7B | 107.7 | C11—N1—C7 | 123.9 (2) |
O2—C8—N1 | 124.2 (2) | C8—N1—C7 | 124.5 (2) |
C6—C1—C2—C3 | 0.2 (4) | C8—C9—C10—C11 | −0.5 (2) |
C1—C2—C3—C4 | 0.2 (4) | C12—C10—C11—O3 | 1.8 (4) |
C1—C2—C3—C7 | −179.6 (2) | C9—C10—C11—O3 | −177.4 (2) |
C2—C3—C4—F1 | 179.9 (2) | C12—C10—C11—N1 | −179.3 (2) |
C7—C3—C4—F1 | −0.3 (3) | C9—C10—C11—N1 | 1.6 (2) |
C2—C3—C4—C5 | −0.4 (4) | C9—C10—C12—C13 | −0.7 (3) |
C7—C3—C4—C5 | 179.4 (2) | C11—C10—C12—C13 | −179.8 (2) |
F1—C4—C5—C6 | 179.9 (2) | C10—C12—C13—C14 | 1.0 (3) |
C3—C4—C5—C6 | 0.2 (4) | C12—C13—C14—C15 | −0.4 (4) |
C2—C1—C6—O1 | −179.6 (2) | C10—C9—C15—C14 | 0.7 (3) |
C2—C1—C6—C5 | −0.4 (4) | C8—C9—C15—C14 | −179.7 (2) |
C4—C5—C6—O1 | 179.4 (2) | C13—C14—C15—C9 | −0.4 (4) |
C4—C5—C6—C1 | 0.2 (4) | O3—C11—N1—C8 | 177.0 (2) |
C2—C3—C7—N1 | 1.6 (3) | C10—C11—N1—C8 | −2.1 (2) |
C4—C3—C7—N1 | −178.2 (2) | O3—C11—N1—C7 | −2.8 (4) |
O2—C8—C9—C15 | −0.5 (4) | C10—C11—N1—C7 | 178.11 (18) |
N1—C8—C9—C15 | 179.6 (2) | O2—C8—N1—C11 | −178.1 (2) |
O2—C8—C9—C10 | 179.2 (3) | C9—C8—N1—C11 | 1.8 (3) |
N1—C8—C9—C10 | −0.7 (2) | O2—C8—N1—C7 | 1.7 (4) |
C15—C9—C10—C12 | −0.1 (3) | C9—C8—N1—C7 | −178.4 (2) |
C8—C9—C10—C12 | −179.79 (19) | C3—C7—N1—C11 | 92.4 (3) |
C15—C9—C10—C11 | 179.2 (2) | C3—C7—N1—C8 | −87.4 (3) |
Hydrogen-bond geometry (Å, º)
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···F1i | 0.82 | 2.52 | 3.267 (2) | 152 |
C2—H6···O2ii | 0.93 | 2.51 | 3.303 (3) | 144 |
C12—H12···O2iii | 0.93 | 2.51 | 3.403 (3) | 161 |
C15—H15···O3iv | 0.93 | 2.47 | 3.346 (3) | 157 |
Symmetry codes: (i) x, y, z+1; (ii) x, −y+1/2, z+1/2; (iii) −x, y+1/2, −z+1/2; (iv) −x, y−1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: MW2073).
References
- Agilent (2012). CrysAlis PRO Agilent Technologies, Yarnton, Oxfordshire, England.
- Asad, M., Oo, C.-W., Osman, H., Fun, H.-K. & Arshad, S. (2012). Acta Cryst. E68, o38. [DOI] [PMC free article] [PubMed]
- Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573.
- Bhattacharya, S. K. & Chakrabarti, A. (1998). Indian J. Exp. Biol. 36, 118–121. [PubMed]
- Clark, R. C. & Reid, J. S. (1995). Acta Cryst. A51, 887–897.
- Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
- Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
- Fu, X.-S., Yu, X.-P., Wang, W.-M. & Lin, F. (2010). Acta Cryst. E66, o1745. [DOI] [PMC free article] [PubMed]
- Medvedev, A. E., Clow, A., Sandler, M. & Glover, V. (1996). Biochem. Pharmacol. 52, 385–391. [DOI] [PubMed]
- Raza, A. R., Saddiqa, A., Tahir, M. N. & Saddiq, S. (2010). Acta Cryst. E66, o2979. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Sridhar, S. K. & Ramesh, A. (2001). Biol. Pharm. Bull. 24, 1149–1152. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812029923/mw2073sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029923/mw2073Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812029923/mw2073Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report