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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jul 18;68(Pt 8):o2478. doi: 10.1107/S1600536812029923

2-(2-Fluoro-4-hy­droxy­benz­yl)isoindoline-1,3-dione

Hilal Vesek a,*, Canan Kazak a, Ayşen Alaman Ağar b, Sümeyye Gümüş b, Muhittin Aygün c
PMCID: PMC3414933  PMID: 22904920

Abstract

In the title compound, C15H10FNO3, the dihedral angle between the isoindoline-1,3-dione and 3-fluoro-4-methyl­phenol groups is 86.88 (8)°. The isoindoline-1,3-dione fragment is almost planar, with an r.m.s. deviation of 0.0154 Å within the group. Inter­molecular C—H⋯O hydrogen bonds generate C(6) chains running parallel to the [010] direction.

Related literature  

For background to indoline-1,3-dione and its derivatives, see: Raza et al. (2010). For discussion of the broad spectrum of properties of these compounds, see: Bhattacharya & Chakrabarti (1998). For discussion of their anti-inflammatory properties, see: Sridhar & Ramesh (2001). For discussion of their anxiogenic activities, see: Medvedev et al. (1996). For related structures, see: Asad et al. (2012); Fu et al. (2010). For classification of hydrogen-bonding patterns, see: Bernstein et al. (1995).graphic file with name e-68-o2478-scheme1.jpg

Experimental  

Crystal data  

  • C15H10FNO3

  • M r = 271.24

  • Monoclinic, Inline graphic

  • a = 12.4362 (7) Å

  • b = 13.8189 (8) Å

  • c = 7.2376 (4) Å

  • β = 105.784 (6)°

  • V = 1196.92 (12) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.12 mm−1

  • T = 296 K

  • 0.49 × 0.36 × 0.16 mm

Data collection  

  • Agilent Xcalibur Eos diffractometer

  • Absorption correction: analytical [CrysAlis PRO (Agilent, 2012) and Clark & Reid (1995)] T min = 0.977, T max = 0.995

  • 6558 measured reflections

  • 2475 independent reflections

  • 1455 reflections with I > 2σ(I)

  • R int = 0.030

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.057

  • wR(F 2) = 0.141

  • S = 1.04

  • 2475 reflections

  • 182 parameters

  • 1 restraint

  • H-atom parameters constrained

  • Δρmax = 0.27 e Å−3

  • Δρmin = −0.25 e Å−3

Data collection: CrysAlis PRO (Agilent, 2012); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812029923/mw2073sup1.cif

e-68-o2478-sup1.cif (17.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029923/mw2073Isup2.hkl

e-68-o2478-Isup2.hkl (119.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812029923/mw2073Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1⋯F1i 0.82 2.52 3.267 (2) 152
C2—H6⋯O2ii 0.93 2.51 3.303 (3) 144
C12—H12⋯O2iii 0.93 2.51 3.403 (3) 161
C15—H15⋯O3iv 0.93 2.47 3.346 (3) 157

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

The authors acknowledge the Faculty of Arts and Sciences of Dokuz Eylul University, Turkey, for the use of the Agilent Xcalibur Eos diffractometer (purchased under University Research grant No. 2010.KB.FEN.13).

supplementary crystallographic information

Comment

Indoline-2,3-dione and its derivatives are well known for their broad spectrum properties including anticonvulsant (Bhattacharya & Chakrabarti, 1998), anti-inflammatory (Sridhar & Ramesh, 2001) and anxiogenic (Medvedev et al., 1996) activities. On the other hand, dithiocarbamates also show a large range of biological activities for example fungicidal (Ozkirimli et al., 2005) and antitumor activities (Cao et al., 2005; Gaspari et al., 2006).

As an extension of the work on the structural characterization of indoline-2,3-dione derivatives, the crystal structure of the title compound is reported here. The isoindoline-1,3-dione fragment is almost planar with an r.m.s. deviation of 0.0154 Å within the group. This unit makes a dihedral angle of 86.88 (8)° with the benzene ring.

The F1—C4 bond length of 1.349 (3) Å agrees with the corresponding distance in 9-(7-fluoro-4-oxo-4H-chromen-3-yl)-3,3,6,6-tetramethyl-2,3,4,5,6, 7,8,9-octahydro-1H-xanthene-1,8-dione [1.349 (2) Å (Asad et al., 2012)]. The C═O bond lengths are 1.205 (3) Å for C8═O2 and C11═O3 which are similar to the corresponding values found in 2-(2-oxothiolan-3-yl)isoindoline-1,3-dione [1.202 (5) Å and 1.207 (5) Å (Raza et al., 2010)].

The molecules are linked into sheets by a combination of C—H···O and O—H···F interactions (Table 1). C(6) chains along [010] are created by pairwise C12—H12···O2 and C15—H15···O3 hydrogen bond interactions. The combination of the C(6) chains generates chain edge-fused R22(10) rings running along [010]. C(6) chains along [001] are formed by O1—H1···F1 hydrogen bond interactions (Fig.2).

Experimental

The compound 2-(2-fluoro-4-hydroxybenzyl)-1H-isoindole-1,3(2H)-dione was prepared by combining solutions of 2-hydroxy-1H-isoindole-1,3(2H)-dione (0.011 g 0.067 mmol) in 20 ml of ethanol and 1-(2,4-difluorophenyl)methanamine (0.009 g, 0.067 mmol) in 20 ml of ethanol and refluxing the resulting mixture for 1 h with stirring. Crystals of 2-(2-fluoro-4-hydroxybenzyl)-1H-isoindole-1,3(2H)-dione suitable for X-ray analysis were obtained from ethyl alcohol by slow evaporation (yield 72%; m.p. 155–158°C).

Refinement

The H1 atom was located in a difference map and the O—H distance adjusted to 0.82 (2) Å while the other H atoms were placed in calculated positions. All were constrained to ride on their parent atoms, with C—H = 0.93–0.97 Å and Uiso(H) = 1.2Ueq(C,O).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.

Fig. 2.

Fig. 2.

Crystal packing, viewed along the b axis,of the title compound. The C—H···O and O—H···F interactions are shown as dashed lines (see Table 1 for details).

Crystal data

C15H10FNO3 F(000) = 560
Mr = 271.24 Dx = 1.505 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P2ybc Cell parameters from 1089 reflections
a = 12.4362 (7) Å θ = 3.3–29.3°
b = 13.8189 (8) Å µ = 0.12 mm1
c = 7.2376 (4) Å T = 296 K
β = 105.784 (6)° Plate, yellow
V = 1196.92 (12) Å3 0.49 × 0.36 × 0.16 mm
Z = 4

Data collection

Agilent Xcalibur Eos diffractometer 2475 independent reflections
Radiation source: Enhance (Mo) X-ray Source 1455 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.030
Detector resolution: 16.1333 pixels mm-1 θmax = 26.5°, θmin = 3.3°
ω scans h = −15→15
Absorption correction: analytical [CrysAlis PRO (Agilent, 2012) and Clark & Reid (1995)] k = −10→17
Tmin = 0.977, Tmax = 0.995 l = −9→9
6558 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057 H-atom parameters constrained
wR(F2) = 0.141 w = 1/[σ2(Fo2) + (0.0576P)2 + 0.052P] where P = (Fo2 + 2Fc2)/3
S = 1.04 (Δ/σ)max < 0.001
2475 reflections Δρmax = 0.27 e Å3
182 parameters Δρmin = −0.25 e Å3
1 restraint Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.015 (2)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
F1 0.51132 (13) 0.39770 (13) 0.2014 (2) 0.0744 (5)
O1 0.62844 (14) 0.34620 (14) 0.8605 (2) 0.0669 (6)
H1 0.6025 0.3378 0.9521 0.100*
O2 0.14305 (15) 0.22946 (14) 0.1784 (3) 0.0688 (6)
O3 0.15474 (15) 0.55595 (13) 0.2472 (2) 0.0640 (6)
C1 0.4371 (2) 0.3540 (2) 0.7088 (4) 0.0587 (7)
H2 0.4209 0.3437 0.8253 0.070*
C2 0.3525 (2) 0.36576 (18) 0.5413 (4) 0.0512 (7)
H6 0.2786 0.3635 0.5460 0.061*
C3 0.37512 (19) 0.38080 (16) 0.3672 (3) 0.0432 (6)
C4 0.4864 (2) 0.38324 (18) 0.3694 (3) 0.0489 (6)
C5 0.5730 (2) 0.37230 (18) 0.5324 (4) 0.0555 (7)
H3 0.6472 0.3745 0.5292 0.067*
C6 0.5443 (2) 0.35796 (19) 0.6992 (4) 0.0573 (7)
C7 0.2863 (2) 0.39461 (19) 0.1803 (3) 0.0513 (7)
H7A 0.2988 0.4560 0.1244 0.062*
H7B 0.2934 0.3438 0.0920 0.062*
C8 0.1105 (2) 0.31010 (19) 0.1968 (4) 0.0486 (7)
C9 0.00117 (19) 0.34221 (18) 0.2184 (3) 0.0443 (6)
C10 0.00446 (19) 0.44188 (18) 0.2373 (3) 0.0423 (6)
C11 0.1162 (2) 0.47537 (19) 0.2301 (3) 0.0464 (6)
C12 −0.0859 (2) 0.4927 (2) 0.2606 (3) 0.0536 (7)
H12 −0.0835 0.5596 0.2748 0.064*
C13 −0.1802 (2) 0.4405 (2) 0.2620 (3) 0.0603 (8)
H13 −0.2430 0.4731 0.2756 0.072*
C14 −0.1837 (2) 0.3410 (2) 0.2438 (4) 0.0602 (8)
H14 −0.2484 0.3079 0.2460 0.072*
C15 −0.0921 (2) 0.2898 (2) 0.2221 (4) 0.0553 (7)
H15 −0.0937 0.2228 0.2107 0.066*
N1 0.17380 (16) 0.39322 (15) 0.2016 (3) 0.0475 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
F1 0.0609 (10) 0.1071 (14) 0.0657 (9) −0.0106 (9) 0.0350 (8) −0.0019 (9)
O1 0.0467 (11) 0.0929 (15) 0.0528 (9) −0.0076 (10) −0.0006 (7) 0.0201 (10)
O2 0.0605 (13) 0.0456 (12) 0.1070 (15) 0.0039 (10) 0.0341 (11) −0.0083 (11)
O3 0.0674 (13) 0.0437 (11) 0.0819 (13) −0.0074 (10) 0.0220 (10) −0.0014 (10)
C1 0.0578 (18) 0.0648 (18) 0.0557 (16) −0.0048 (15) 0.0195 (13) 0.0081 (14)
C2 0.0432 (15) 0.0527 (16) 0.0620 (16) −0.0025 (12) 0.0217 (12) 0.0039 (13)
C3 0.0406 (14) 0.0352 (13) 0.0560 (14) −0.0028 (11) 0.0168 (11) −0.0023 (11)
C4 0.0478 (16) 0.0486 (16) 0.0568 (15) −0.0043 (13) 0.0253 (13) −0.0021 (12)
C5 0.0404 (15) 0.0561 (18) 0.0729 (18) −0.0019 (13) 0.0201 (14) 0.0016 (14)
C6 0.0463 (16) 0.0572 (17) 0.0596 (15) −0.0028 (13) −0.0008 (10) 0.0059 (14)
C7 0.0428 (14) 0.0555 (16) 0.0582 (14) −0.0021 (13) 0.0182 (12) 0.0023 (13)
C8 0.0467 (16) 0.0416 (16) 0.0569 (15) −0.0002 (13) 0.0132 (12) −0.0039 (12)
C9 0.0415 (15) 0.0431 (15) 0.0461 (13) 0.0022 (12) 0.0084 (11) −0.0006 (12)
C10 0.0400 (15) 0.0453 (15) 0.0389 (12) 0.0038 (12) 0.0061 (10) −0.0012 (11)
C11 0.0489 (16) 0.0408 (16) 0.0465 (13) −0.0005 (13) 0.0078 (11) 0.0014 (12)
C12 0.0541 (17) 0.0522 (16) 0.0524 (14) 0.0086 (14) 0.0108 (12) −0.0037 (13)
C13 0.0474 (17) 0.075 (2) 0.0585 (15) 0.0138 (16) 0.0148 (13) −0.0021 (15)
C14 0.0421 (16) 0.076 (2) 0.0631 (16) −0.0033 (15) 0.0163 (13) −0.0001 (15)
C15 0.0466 (16) 0.0528 (16) 0.0664 (16) −0.0080 (14) 0.0153 (13) −0.0047 (14)
N1 0.0387 (12) 0.0445 (12) 0.0589 (12) 0.0009 (10) 0.0126 (10) −0.0005 (10)

Geometric parameters (Å, º)

F1—C4 1.349 (3) C7—H7A 0.9700
O1—C6 1.349 (3) C7—H7B 0.9700
O1—H1 0.8200 C8—N1 1.388 (3)
O2—C8 1.205 (3) C8—C9 1.478 (3)
O3—C11 1.205 (3) C9—C15 1.374 (3)
C1—C6 1.354 (4) C9—C10 1.384 (3)
C1—C2 1.382 (3) C10—C12 1.373 (3)
C1—H2 0.9300 C10—C11 1.479 (3)
C2—C3 1.379 (3) C11—N1 1.388 (3)
C2—H6 0.9300 C12—C13 1.380 (4)
C3—C4 1.380 (3) C12—H12 0.9300
C3—C7 1.508 (3) C13—C14 1.380 (4)
C4—C5 1.372 (3) C13—H13 0.9300
C5—C6 1.364 (4) C14—C15 1.385 (4)
C5—H3 0.9300 C14—H14 0.9300
C7—N1 1.449 (3) C15—H15 0.9300
C6—O1—H1 109.5 O2—C8—C9 129.5 (2)
C6—C1—C2 118.4 (2) N1—C8—C9 106.3 (2)
C6—C1—H2 120.8 C15—C9—C10 121.7 (2)
C2—C1—H2 120.8 C15—C9—C8 130.5 (2)
C3—C2—C1 121.5 (2) C10—C9—C8 107.8 (2)
C3—C2—H6 119.2 C12—C10—C9 121.2 (2)
C1—C2—H6 119.2 C12—C10—C11 130.7 (2)
C2—C3—C4 116.5 (2) C9—C10—C11 108.1 (2)
C2—C3—C7 123.9 (2) O3—C11—N1 124.3 (2)
C4—C3—C7 119.6 (2) O3—C11—C10 129.6 (2)
F1—C4—C5 118.2 (2) N1—C11—C10 106.1 (2)
F1—C4—C3 118.0 (2) C10—C12—C13 117.3 (3)
C5—C4—C3 123.9 (2) C10—C12—H12 121.3
C6—C5—C4 116.3 (2) C13—C12—H12 121.3
C6—C5—H3 121.8 C12—C13—C14 121.6 (3)
C4—C5—H3 121.8 C12—C13—H13 119.2
O1—C6—C1 119.6 (3) C14—C13—H13 119.2
O1—C6—C5 117.1 (3) C13—C14—C15 120.9 (3)
C1—C6—C5 123.3 (2) C13—C14—H14 119.5
N1—C7—C3 113.3 (2) C15—C14—H14 119.5
N1—C7—H7A 108.9 C9—C15—C14 117.2 (3)
C3—C7—H7A 108.9 C9—C15—H15 121.4
N1—C7—H7B 108.9 C14—C15—H15 121.4
C3—C7—H7B 108.9 C11—N1—C8 111.6 (2)
H7A—C7—H7B 107.7 C11—N1—C7 123.9 (2)
O2—C8—N1 124.2 (2) C8—N1—C7 124.5 (2)
C6—C1—C2—C3 0.2 (4) C8—C9—C10—C11 −0.5 (2)
C1—C2—C3—C4 0.2 (4) C12—C10—C11—O3 1.8 (4)
C1—C2—C3—C7 −179.6 (2) C9—C10—C11—O3 −177.4 (2)
C2—C3—C4—F1 179.9 (2) C12—C10—C11—N1 −179.3 (2)
C7—C3—C4—F1 −0.3 (3) C9—C10—C11—N1 1.6 (2)
C2—C3—C4—C5 −0.4 (4) C9—C10—C12—C13 −0.7 (3)
C7—C3—C4—C5 179.4 (2) C11—C10—C12—C13 −179.8 (2)
F1—C4—C5—C6 179.9 (2) C10—C12—C13—C14 1.0 (3)
C3—C4—C5—C6 0.2 (4) C12—C13—C14—C15 −0.4 (4)
C2—C1—C6—O1 −179.6 (2) C10—C9—C15—C14 0.7 (3)
C2—C1—C6—C5 −0.4 (4) C8—C9—C15—C14 −179.7 (2)
C4—C5—C6—O1 179.4 (2) C13—C14—C15—C9 −0.4 (4)
C4—C5—C6—C1 0.2 (4) O3—C11—N1—C8 177.0 (2)
C2—C3—C7—N1 1.6 (3) C10—C11—N1—C8 −2.1 (2)
C4—C3—C7—N1 −178.2 (2) O3—C11—N1—C7 −2.8 (4)
O2—C8—C9—C15 −0.5 (4) C10—C11—N1—C7 178.11 (18)
N1—C8—C9—C15 179.6 (2) O2—C8—N1—C11 −178.1 (2)
O2—C8—C9—C10 179.2 (3) C9—C8—N1—C11 1.8 (3)
N1—C8—C9—C10 −0.7 (2) O2—C8—N1—C7 1.7 (4)
C15—C9—C10—C12 −0.1 (3) C9—C8—N1—C7 −178.4 (2)
C8—C9—C10—C12 −179.79 (19) C3—C7—N1—C11 92.4 (3)
C15—C9—C10—C11 179.2 (2) C3—C7—N1—C8 −87.4 (3)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H1···F1i 0.82 2.52 3.267 (2) 152
C2—H6···O2ii 0.93 2.51 3.303 (3) 144
C12—H12···O2iii 0.93 2.51 3.403 (3) 161
C15—H15···O3iv 0.93 2.47 3.346 (3) 157

Symmetry codes: (i) x, y, z+1; (ii) x, −y+1/2, z+1/2; (iii) −x, y+1/2, −z+1/2; (iv) −x, y−1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: MW2073).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812029923/mw2073sup1.cif

e-68-o2478-sup1.cif (17.8KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029923/mw2073Isup2.hkl

e-68-o2478-Isup2.hkl (119.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812029923/mw2073Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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