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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jul 21;68(Pt 8):o2507–o2508. doi: 10.1107/S1600536812032060

(E)-2-{[(2-Amino­pyridin-3-yl)imino]­meth­yl}-4,6-di-tert-butyl­phenol

Alexander Carreño a, Sonia Ladeira b, Annie Castel b, Andres Vega c, Ivonne Chavez d,*
PMCID: PMC3414959  PMID: 22904946

Abstract

In the title compound, C20H27N3O, the hy­droxy group forms an intra­molecular O—H⋯N hydrogen bond with the imino N atom. The dihedral angle between the aromatic rings is 33.09 (9)°. In the crystal, mol­ecules form centrosymmetric dimers via pairs of N—H⋯N hydrogen bonds involving amino­pyridine fragments.

Related literature  

For asymmetric ligands prepared from aromatic diamines and their metal complexes exhibiting catalytic activity, e.g. metallosalphenes, see: Kleij, Kuil et al. (2005); Kleij, Tooke et al. (2005). For the synthetic procedure, see: Benisvy et al. (2003, 2004). For the related structure of 2-amino-3-salicylidenamino­pyridine, see: Cimerman et al. (1992).graphic file with name e-68-o2507-scheme1.jpg

Experimental  

Crystal data  

  • C20H27N3O

  • M r = 325.45

  • Monoclinic, Inline graphic

  • a = 16.8457 (12) Å

  • b = 10.6227 (8) Å

  • c = 10.4817 (6) Å

  • β = 101.268 (4)°

  • V = 1839.5 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.07 mm−1

  • T = 193 K

  • 0.6 × 0.06 × 0.04 mm

Data collection  

  • Bruker Kappa APEXII Quazar area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.957, T max = 0.997

  • 29076 measured reflections

  • 4532 independent reflections

  • 2875 reflections with I > 2σ(I)

  • R int = 0.063

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.054

  • wR(F 2) = 0.160

  • S = 1.03

  • 4532 reflections

  • 230 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.28 e Å−3

  • Δρmin = −0.26 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812032060/yk2062sup1.cif

e-68-o2507-sup1.cif (18.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812032060/yk2062Isup2.hkl

e-68-o2507-Isup2.hkl (222.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812032060/yk2062Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1A⋯N1 0.84 1.87 2.6214 (19) 149
N3—H203⋯N2i 0.89 (1) 2.16 (1) 3.045 (2) 175 (2)

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors acknowledge financial support from UNAB DI-28-10/I, Proyecto P07-006-F de la Iniciativa Científica Milenio del Ministerio de Economía, Fomento y Turismo and ECOS-CONICYT C08E01. AV is a member of Financiamiento Basal para Centros Científicos y Tecnológicos de Excelencia FB0807. A. Carreño acknowledges Universidad Andres Bello for a doctoral fellowship.

supplementary crystallographic information

Comment

Aromatic diamines are used as starting materials for the templated synthesis of nonsymmetric metallosalphen complexes. These are useful in homogeneous catalysis. The non-templated synthesis pathway is also possible (Kleij, Kuil et al., 2005; Kleij, Tooke et al., 2005) even using diamino pyridine in combination with salicyl aldehyde derivatives. Additionaly, partially substituted products like mono Schiff bases are possible to be isolated with good yield under the same experimental conditions.

The title compound, mono Schiff base, was prepared by the non-templated direct condensation of 1,2-diaminopyridine and 3,5-di-tert-buthyl-2-ol-benzaldehide according to a previously described method (Benisvy et al., 2003, 2004).

In the title compound, the central benzene ring is substituted at position 1 with a hydroxyl group, at positions 2 and 4 with tert-buthyl groups, and at position 6 with a [(2-aminopyridin-3-yl)imino]methyl. The vicinity of the hydroxyl and the [(2-aminopyridin-3-yl)imino]methyl substituents leads to an intramolecular hydrogen bond with O1···N1 distance of 2.621 (1) Å. The reported value for the similar molecule, 2-amino-3-salicylideneaminopyridine, is 2.649 (1) Å (Cimerman et al., 1992).

In addition to that intramolecular interaction, the molecules form dimers in the solid state via hydrogen bonds between the amino pyridine fragments, as shown in Figure 2.

Experimental

The compound was prepared by direct interaction between 1,2-diaminopyridine and 3,5-di-tert-butyl-2-ol-benzaldehide (Fig. 3) according to a previously described method (Benisvy et al., 2003, 2004), slighty modified by using ethanol as a solvent, instead of diclorometane and 24 h as reaction time. The synthesis yield was 70%.

Refinement

The H atoms attached to C and O were positioned geometrically and refined using a riding model, with C—H distances of 0.95 Å (CH) and 0.98 Å (CH3) and O—H equal to 0.84 Å. Uiso(H) values were set equal to 1.5Ueq of the parent atoms for methyl and hydroxyl groups, while 1.2Ueq for the others. The amine hydrogen atoms were located in the difference Fourier map, and their coordinates were refined with N—H distances restrained to 0.88 Å.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound showing atom labelling scheme and the intramolecular hydrogen bond. Thermal ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

Hydrogen-bonded molecular dimers in the crystal. Symmetry code: (i) -x, 2 - y, -1 - z.

Fig. 3.

Fig. 3.

Synthetic route to the title compound.

Crystal data

C20H27N3O F(000) = 704
Mr = 325.45 Dx = 1.175 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 4180 reflections
a = 16.8457 (12) Å θ = 2.3–24.2°
b = 10.6227 (8) Å µ = 0.07 mm1
c = 10.4817 (6) Å T = 193 K
β = 101.268 (4)° Needle, yellow
V = 1839.5 (2) Å3 0.6 × 0.06 × 0.04 mm
Z = 4

Data collection

Bruker Kappa APEXII Quazar area-detector diffractometer 4532 independent reflections
Radiation source: microfocus sealed tube 2875 reflections with I > 2σ(I)
Multilayer optics monochromator Rint = 0.063
φ and ω scans θmax = 28.3°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −22→22
Tmin = 0.957, Tmax = 0.997 k = −14→14
29076 measured reflections l = −13→13

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.160 H atoms treated by a mixture of independent and constrained refinement
S = 1.03 w = 1/[σ2(Fo2) + (0.0793P)2 + 0.3155P] where P = (Fo2 + 2Fc2)/3
4532 reflections (Δ/σ)max = 0.001
230 parameters Δρmax = 0.28 e Å3
2 restraints Δρmin = −0.26 e Å3

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.33157 (10) 0.86007 (16) 0.29538 (16) 0.0257 (4)
H1 0.3674 0.8829 0.3736 0.031*
C2 0.28038 (10) 0.95302 (16) 0.23052 (16) 0.0249 (4)
C3 0.22810 (10) 0.91744 (16) 0.11465 (16) 0.0257 (4)
C4 0.22863 (10) 0.79318 (16) 0.06788 (16) 0.0245 (4)
C5 0.28054 (10) 0.70461 (16) 0.13891 (17) 0.0266 (4)
H5 0.2794 0.6204 0.108 0.032*
C6 0.33349 (10) 0.73537 (16) 0.25259 (16) 0.0253 (4)
C7 0.28219 (12) 1.08949 (17) 0.28088 (17) 0.0320 (4)
C8 0.34609 (13) 1.10793 (19) 0.40455 (18) 0.0390 (5)
H8A 0.3332 1.0544 0.4739 0.058*
H8B 0.3467 1.1963 0.4315 0.058*
H8C 0.3994 1.0849 0.3876 0.058*
C9 0.19959 (13) 1.1247 (2) 0.3122 (2) 0.0461 (5)
H9A 0.157 1.1094 0.2357 0.069*
H9B 0.1997 1.2139 0.336 0.069*
H9C 0.1894 1.0733 0.385 0.069*
C10 0.30327 (16) 1.17916 (19) 0.1770 (2) 0.0478 (6)
H10A 0.355 1.154 0.1554 0.072*
H10B 0.3075 1.2654 0.2109 0.072*
H10C 0.2607 1.1752 0.0987 0.072*
C11 0.39232 (11) 0.63577 (17) 0.32438 (16) 0.0304 (4)
C12 0.43933 (14) 0.6829 (2) 0.4540 (2) 0.0479 (6)
H12A 0.4739 0.6152 0.4976 0.072*
H12B 0.4014 0.7094 0.5088 0.072*
H12C 0.4731 0.7546 0.4394 0.072*
C13 0.34424 (14) 0.5187 (2) 0.3506 (2) 0.0473 (6)
H13A 0.3133 0.4864 0.2681 0.071*
H13B 0.307 0.5414 0.408 0.071*
H13C 0.3818 0.4537 0.3923 0.071*
C14 0.45191 (13) 0.5987 (2) 0.2383 (2) 0.0484 (6)
H14A 0.422 0.5655 0.1555 0.073*
H14B 0.4889 0.534 0.2823 0.073*
H14C 0.4831 0.6728 0.2218 0.073*
C15 0.17797 (10) 0.75478 (17) −0.05444 (16) 0.0275 (4)
H15 0.1788 0.6688 −0.079 0.033*
C16 0.05978 (11) 0.86736 (18) −0.35148 (17) 0.0299 (4)
C17 0.08167 (10) 0.78338 (17) −0.24490 (16) 0.0281 (4)
C18 0.04954 (11) 0.66344 (19) −0.25690 (18) 0.0335 (4)
H18 0.0632 0.605 −0.1874 0.04*
C19 −0.00259 (12) 0.6285 (2) −0.37037 (18) 0.0383 (5)
H19 −0.0231 0.5451 −0.3819 0.046*
C20 −0.02377 (12) 0.7174 (2) −0.46567 (18) 0.0397 (5)
H20 −0.0615 0.6942 −0.5417 0.048*
N1 0.13236 (9) 0.83038 (15) −0.13087 (14) 0.0289 (4)
N2 0.00551 (10) 0.83493 (16) −0.45811 (14) 0.0355 (4)
N3 0.09503 (10) 0.98206 (16) −0.35261 (16) 0.0369 (4)
H103 0.1261 (11) 1.010 (2) −0.2805 (14) 0.044*
H203 0.0683 (12) 1.0386 (16) −0.4065 (17) 0.044*
O1 0.17780 (8) 1.00391 (12) 0.04615 (12) 0.0353 (3)
H1A 0.1527 0.9712 −0.023 0.053*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0288 (9) 0.0250 (9) 0.0211 (8) −0.0005 (7) −0.0006 (7) −0.0018 (7)
C2 0.0281 (9) 0.0224 (9) 0.0234 (8) 0.0010 (7) 0.0029 (7) −0.0004 (7)
C3 0.0268 (9) 0.0238 (9) 0.0245 (8) 0.0038 (7) 0.0001 (7) 0.0028 (7)
C4 0.0253 (9) 0.0225 (9) 0.0241 (8) −0.0017 (7) 0.0006 (7) −0.0012 (6)
C5 0.0296 (9) 0.0212 (9) 0.0275 (9) 0.0013 (7) 0.0025 (7) −0.0020 (7)
C6 0.0266 (9) 0.0246 (9) 0.0236 (8) 0.0027 (7) 0.0025 (7) 0.0023 (7)
C7 0.0436 (11) 0.0215 (9) 0.0292 (9) 0.0018 (8) 0.0025 (8) −0.0033 (7)
C8 0.0523 (12) 0.0277 (10) 0.0331 (10) −0.0017 (9) −0.0009 (9) −0.0065 (8)
C9 0.0538 (13) 0.0368 (12) 0.0456 (12) 0.0138 (10) 0.0043 (10) −0.0092 (9)
C10 0.0753 (16) 0.0253 (10) 0.0383 (11) −0.0091 (11) 0.0004 (11) 0.0029 (9)
C11 0.0374 (10) 0.0268 (9) 0.0243 (9) 0.0097 (8) −0.0007 (7) 0.0006 (7)
C12 0.0552 (13) 0.0433 (13) 0.0358 (11) 0.0196 (11) −0.0141 (10) −0.0033 (9)
C13 0.0563 (14) 0.0303 (11) 0.0533 (13) 0.0066 (10) 0.0060 (11) 0.0123 (10)
C14 0.0483 (13) 0.0567 (14) 0.0394 (12) 0.0260 (11) 0.0067 (10) 0.0056 (10)
C15 0.0271 (9) 0.0266 (9) 0.0272 (9) −0.0002 (7) 0.0016 (7) −0.0039 (7)
C16 0.0288 (9) 0.0342 (10) 0.0254 (9) 0.0033 (8) 0.0024 (7) −0.0034 (7)
C17 0.0246 (9) 0.0348 (10) 0.0229 (9) 0.0011 (8) 0.0002 (7) −0.0038 (7)
C18 0.0319 (10) 0.0374 (11) 0.0296 (9) −0.0020 (8) 0.0020 (8) 0.0001 (8)
C19 0.0386 (11) 0.0407 (12) 0.0334 (10) −0.0104 (9) 0.0014 (8) −0.0041 (9)
C20 0.0397 (11) 0.0483 (13) 0.0270 (10) −0.0079 (10) −0.0037 (8) −0.0072 (9)
N1 0.0273 (8) 0.0332 (9) 0.0234 (7) 0.0003 (6) −0.0016 (6) −0.0025 (6)
N2 0.0363 (9) 0.0400 (10) 0.0263 (8) −0.0014 (7) −0.0035 (7) −0.0021 (7)
N3 0.0436 (10) 0.0318 (9) 0.0298 (9) 0.0002 (8) −0.0063 (7) 0.0015 (7)
O1 0.0397 (8) 0.0274 (7) 0.0321 (7) 0.0098 (6) −0.0093 (6) −0.0004 (5)

Geometric parameters (Å, º)

C1—C2 1.397 (2) C11—C13 1.538 (3)
C1—C6 1.401 (2) C12—H12A 0.98
C1—H1 0.95 C12—H12B 0.98
C2—C3 1.406 (2) C12—H12C 0.98
C2—C7 1.541 (2) C13—H13A 0.98
C3—O1 1.356 (2) C13—H13B 0.98
C3—C4 1.409 (2) C13—H13C 0.98
C4—C5 1.396 (2) C14—H14A 0.98
C4—C15 1.453 (2) C14—H14B 0.98
C5—C6 1.381 (2) C14—H14C 0.98
C5—H5 0.95 C15—N1 1.279 (2)
C6—C11 1.541 (2) C15—H15 0.95
C7—C8 1.527 (2) C16—N2 1.343 (2)
C7—C9 1.537 (3) C16—N3 1.357 (3)
C7—C10 1.539 (3) C16—C17 1.421 (2)
C8—H8A 0.98 C17—C18 1.380 (3)
C8—H8B 0.98 C17—N1 1.417 (2)
C8—H8C 0.98 C18—C19 1.384 (3)
C9—H9A 0.98 C18—H18 0.95
C9—H9B 0.98 C19—C20 1.370 (3)
C9—H9C 0.98 C19—H19 0.95
C10—H10A 0.98 C20—N2 1.339 (3)
C10—H10B 0.98 C20—H20 0.95
C10—H10C 0.98 N3—H103 0.882 (9)
C11—C12 1.518 (3) N3—H203 0.885 (9)
C11—C14 1.527 (3) O1—H1A 0.84
C2—C1—C6 124.28 (15) C12—C11—C6 112.56 (15)
C2—C1—H1 117.9 C14—C11—C6 108.83 (15)
C6—C1—H1 117.9 C13—C11—C6 109.36 (15)
C1—C2—C3 116.96 (15) C11—C12—H12A 109.5
C1—C2—C7 121.96 (15) C11—C12—H12B 109.5
C3—C2—C7 121.07 (15) H12A—C12—H12B 109.5
O1—C3—C2 119.77 (15) C11—C12—H12C 109.5
O1—C3—C4 119.75 (15) H12A—C12—H12C 109.5
C2—C3—C4 120.47 (15) H12B—C12—H12C 109.5
C5—C4—C3 119.45 (15) C11—C13—H13A 109.5
C5—C4—C15 118.68 (15) C11—C13—H13B 109.5
C3—C4—C15 121.84 (15) H13A—C13—H13B 109.5
C6—C5—C4 122.16 (16) C11—C13—H13C 109.5
C6—C5—H5 118.9 H13A—C13—H13C 109.5
C4—C5—H5 118.9 H13B—C13—H13C 109.5
C5—C6—C1 116.65 (15) C11—C14—H14A 109.5
C5—C6—C11 120.27 (15) C11—C14—H14B 109.5
C1—C6—C11 123.06 (15) H14A—C14—H14B 109.5
C8—C7—C9 107.74 (16) C11—C14—H14C 109.5
C8—C7—C10 107.40 (17) H14A—C14—H14C 109.5
C9—C7—C10 110.13 (17) H14B—C14—H14C 109.5
C8—C7—C2 112.01 (15) N1—C15—C4 123.62 (16)
C9—C7—C2 110.13 (16) N1—C15—H15 118.2
C10—C7—C2 109.38 (15) C4—C15—H15 118.2
C7—C8—H8A 109.5 N2—C16—N3 116.81 (16)
C7—C8—H8B 109.5 N2—C16—C17 121.54 (17)
H8A—C8—H8B 109.5 N3—C16—C17 121.60 (16)
C7—C8—H8C 109.5 C18—C17—N1 124.26 (16)
H8A—C8—H8C 109.5 C18—C17—C16 118.10 (16)
H8B—C8—H8C 109.5 N1—C17—C16 117.58 (16)
C7—C9—H9A 109.5 C17—C18—C19 119.84 (18)
C7—C9—H9B 109.5 C17—C18—H18 120.1
H9A—C9—H9B 109.5 C19—C18—H18 120.1
C7—C9—H9C 109.5 C20—C19—C18 118.20 (19)
H9A—C9—H9C 109.5 C20—C19—H19 120.9
H9B—C9—H9C 109.5 C18—C19—H19 120.9
C7—C10—H10A 109.5 N2—C20—C19 123.99 (17)
C7—C10—H10B 109.5 N2—C20—H20 118
H10A—C10—H10B 109.5 C19—C20—H20 118
C7—C10—H10C 109.5 C15—N1—C17 119.76 (16)
H10A—C10—H10C 109.5 C20—N2—C16 118.12 (17)
H10B—C10—H10C 109.5 C16—N3—H103 118.8 (14)
C12—C11—C14 109.03 (17) C16—N3—H203 116.5 (14)
C12—C11—C13 107.93 (17) H103—N3—H203 118 (2)
C14—C11—C13 109.08 (17) C3—O1—H1A 109.5

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H1A···N1 0.84 1.87 2.6214 (19) 149
N3—H203···N2i 0.89 (1) 2.16 (1) 3.045 (2) 175 (2)

Symmetry code: (i) −x, −y+2, −z−1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: YK2062).

References

  1. Benisvy, L., Bill, E., Blake, A. J., Collison, D., Davies, E. S., Garner, C. D., Guindy, C. I., McInnes, E. J. L., McArdle, G., McMaster, J., Wilson, C. & Wolowska, J. (2004). Dalton Trans. pp. 3647–3653. [DOI] [PubMed]
  2. Benisvy, L., Blake, A. J., Collison, D., Davies, E. S., Garner, C. D., McInnes, E. J. L., McMaster, J., Whittaker, G. & Wilson, C. (2003). Dalton Trans. pp. 1975–1985.
  3. Bruker (2009). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Cimerman, Z., Galesic, N. & Bosner, B. (1992). J. Mol. Struct. 274, 131–144.
  5. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  6. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
  7. Kleij, A. W., Kuil, M., Tooke, D. M., Lutz, M., Spek, A. L. & Reek, J. N. H. (2005). Chem. Eur. J. 11, 4743–4750. [DOI] [PubMed]
  8. Kleij, A. W., Tooke, D. M., Spek, A. L. & Reek, J. N. H. (2005). Eur. J. Inorg. Chem. pp. 4626–4634.
  9. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812032060/yk2062sup1.cif

e-68-o2507-sup1.cif (18.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812032060/yk2062Isup2.hkl

e-68-o2507-Isup2.hkl (222.1KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812032060/yk2062Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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