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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Jul 21;68(Pt 8):o2514. doi: 10.1107/S1600536812032230

4-Cyano-1-methyl­pyridinium iodide

Michael N Kammer a, Lynn V Koplitz b, Joel T Mague c,*
PMCID: PMC3414965  PMID: 22904952

Abstract

In the crystal structure of the title compound, C7H7N2 +·I, the cations form inversion-related dimers via weak pairwise C—H⋯N hydrogen bonds. In the dimers, the pyridinium rings are parallel to one another with their mean planes separated by a normal distance of ca 0.28 Å. Weak C—H⋯N inter­actions between adjacent dimers generate a layer lying parallel to (10-1). The remaining H atoms form C—H⋯I inter­actions, which link the layers into a three-dimensional structure.

Related literature  

For the structure of 3-cyano-1-methyl­pyridinium iodide, see: Koplitz et al. (2003). For the structure of 1-methyl­pyridinium iodide, see: Lalancette et al. (1978). For related structures see: Mague et al. (2005); Koplitz et al. (2012). graphic file with name e-68-o2514-scheme1.jpg

Experimental  

Crystal data  

  • C7H7N2 +·I

  • M r = 246.05

  • Monoclinic, Inline graphic

  • a = 5.0734 (3) Å

  • b = 11.4528 (7) Å

  • c = 15.0751 (9) Å

  • β = 99.679 (1)°

  • V = 863.46 (9) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 3.64 mm−1

  • T = 100 K

  • 0.14 × 0.07 × 0.05 mm

Data collection  

  • Bruker SMART APEX CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.614, T max = 0.836

  • 12786 measured reflections

  • 1792 independent reflections

  • 1572 reflections with I > 2σ(I)

  • R int = 0.040

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.020

  • wR(F 2) = 0.048

  • S = 1.07

  • 1792 reflections

  • 92 parameters

  • H-atom parameters constrained

  • Δρmax = 0.88 e Å−3

  • Δρmin = −0.47 e Å−3

Data collection: APEX2 (Bruker, 2010); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812032230/su2473sup1.cif

e-68-o2514-sup1.cif (16KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812032230/su2473Isup2.hkl

e-68-o2514-Isup2.hkl (88.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812032230/su2473Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C3—H3⋯N2i 0.95 2.58 3.434 (4) 149
C1—H1B⋯N2ii 0.98 2.71 3.513 (4) 140
C1—H1A⋯I1iii 0.98 3.04 3.999 (3) 166
C1—H1C⋯I1iv 0.98 3.06 3.870 (3) 141
C2—H2⋯I1v 0.95 2.99 3.796 (3) 144
C5—H5⋯I1vi 0.95 2.94 3.839 (3) 158
C6—H6⋯I1iii 0.95 3.01 3.916 (3) 161

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic; (vi) Inline graphic.

Acknowledgments

We thank the Chemistry Department of Tulane University for support of the X-ray laboratory and the Louisiana Board of Regents through the Louisiana Educational Quality Support Fund [grant LEQSF (2003–2003)-ENH –TR-67) for the purchase of the APEX diffractometer]. MNK was supported by Louisiana Board of Regents grant LEQSF(2007–12)-ENH-PKSFI-PES-03 during the summer of 2011.

supplementary crystallographic information

Comment

Previously reported structures of four other cyano-1-methylpyridinium salts (Koplitz et al., 2003; Mague et al., 2005; Koplitz et al., 2012) include three layered compounds with all atoms, except the methyl H atoms, lying on crystallographic mirror planes. Interestingly, none of the iodide salts of the 4-, 3- and 2-cyano-1-methylpyridinium cation adopt this layer structure, possibly because the larger size and weaker hydrogen-bonding ability of iodide as compared with the smaller chloride and bromide ions provides a less restrictive set of interionic interactions.

The molecular structure of the title compound is illustrated in Fig. 1. In the crystal, the cations form inversion dimers via weak pairwise C2—H2···N2 hydrogen bonds (Table 1). In the dimers the pyridinium rings are parallel to one another with their mean planes separated by a normal distance of ca 0.28 Å. Weak C1—H1B···N2 interactions between adjacent dimers generate a layer lying parallel to (101), with the remaining hydrogen atoms forming C—H···I interactions (Table 1). The latter reinforce the construction of the layers as well as tying them together into a three-dimensional structure (Fig. 2).

In contrast to 3-cyano-1-methylpyridinium iodide (Koplitz et al., 2003) where each iodide ion interacts with three C—H groups, in the title compound each anion is linked by five C—H groups which may reflect the more linear shape of the cation in the present structure.

Experimental

4-Cyanopyridine (10.55 g) was dissolved in benzene (40 ml). Iodomethane (9.5 ml) was added to this solution slowly with stirring and the solution was refluxed for 75 minutes. A yellow solid was collected by vacuum filtration (M.p. 462 - 466 K). Addition of ethanol to the supernatant (ca 2:1 benzene:ethanol) resulted in the the growth overnight of thin plate-like yellow crystals of the title compound, suitable for X-ray diffraction.

Refinement

The C-bound H-atoms were included in calculated positions and treated as riding atoms: C—H = 0.95 and 0.98 Å for CH and CH3 H-atoms, respectively, with Uiso(H) = k × Ueq(C), where k = 1.5 for CH3 H-atoms and 1.2 for other H-atoms.

Figures

Fig. 1.

Fig. 1.

A perspective view of the asymmetric unit of the title compound with atom numbering. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

A view of the crystal packing of the title compound, showing the interpenetrating sheets of cations [colour key: C = gray, H = orange, N = blue, I = purple; C—H···I interactions are depicted as dashed lines].

Crystal data

C7H7N2+·I F(000) = 464
Mr = 246.05 Dx = 1.893 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 8899 reflections
a = 5.0734 (3) Å θ = 2.3–28.6°
b = 11.4528 (7) Å µ = 3.64 mm1
c = 15.0751 (9) Å T = 100 K
β = 99.679 (1)° Plates, yellow
V = 863.46 (9) Å3 0.14 × 0.07 × 0.05 mm
Z = 4

Data collection

Bruker SMART APEX CCD diffractometer 1792 independent reflections
Radiation source: fine-focus sealed tube 1572 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.040
φ and ω scans θmax = 26.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −6→6
Tmin = 0.614, Tmax = 0.836 k = −14→14
12786 measured reflections l = −18→18

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.020 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.048 H-atom parameters constrained
S = 1.07 w = 1/[σ2(Fo2) + (0.0159P)2 + 1.1195P] where P = (Fo2 + 2Fc2)/3
1792 reflections (Δ/σ)max = 0.002
92 parameters Δρmax = 0.88 e Å3
0 restraints Δρmin = −0.47 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. H-atoms were placed in calculated positions (C—H = 0.95 - 0.98 Å) and included as riding contributions with isotropic displacement parameters 1.2 - 1.5 times those of the attached carbon atoms.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
I1 0.95185 (3) 0.378404 (15) 0.854589 (12) 0.02114 (7)
N1 0.6792 (5) 0.3458 (2) 0.18850 (15) 0.0201 (5)
N2 0.7382 (5) 0.0466 (2) −0.07663 (17) 0.0307 (6)
C1 0.6477 (6) 0.4209 (3) 0.26587 (19) 0.0233 (6)
H1A 0.5052 0.4779 0.2472 0.035*
H1B 0.8159 0.4621 0.2871 0.035*
H1C 0.6013 0.3726 0.3146 0.035*
C2 0.8704 (6) 0.2626 (3) 0.19989 (19) 0.0218 (6)
H2 0.9858 0.2554 0.2562 0.026*
C3 0.8996 (6) 0.1883 (3) 0.13096 (19) 0.0219 (6)
H3 1.0361 0.1306 0.1387 0.026*
C4 0.7265 (6) 0.1986 (2) 0.04961 (18) 0.0207 (6)
C5 0.5356 (6) 0.2869 (3) 0.03797 (19) 0.0243 (6)
H5 0.4201 0.2965 −0.0181 0.029*
C6 0.5167 (6) 0.3604 (3) 0.10929 (19) 0.0223 (6)
H6 0.3883 0.4215 0.1023 0.027*
C7 0.7369 (6) 0.1158 (3) −0.0225 (2) 0.0244 (6)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
I1 0.01891 (11) 0.02214 (12) 0.02205 (11) 0.00126 (7) 0.00256 (7) 0.00040 (7)
N1 0.0211 (12) 0.0212 (12) 0.0191 (12) 0.0000 (9) 0.0065 (9) 0.0021 (9)
N2 0.0343 (15) 0.0328 (15) 0.0257 (14) 0.0058 (12) 0.0071 (11) −0.0015 (12)
C1 0.0265 (15) 0.0239 (15) 0.0201 (14) 0.0037 (12) 0.0055 (12) 0.0008 (11)
C2 0.0190 (14) 0.0260 (15) 0.0204 (14) 0.0032 (11) 0.0035 (11) 0.0053 (11)
C3 0.0197 (14) 0.0238 (15) 0.0237 (15) 0.0060 (11) 0.0078 (11) 0.0048 (11)
C4 0.0250 (15) 0.0217 (14) 0.0171 (14) 0.0001 (11) 0.0082 (11) 0.0021 (11)
C5 0.0229 (15) 0.0301 (17) 0.0190 (14) 0.0041 (12) 0.0010 (11) 0.0021 (12)
C6 0.0219 (14) 0.0228 (15) 0.0219 (14) 0.0053 (11) 0.0029 (11) 0.0033 (11)
C7 0.0253 (15) 0.0256 (16) 0.0234 (15) 0.0017 (12) 0.0073 (12) 0.0027 (12)

Geometric parameters (Å, º)

N1—C6 1.343 (4) C2—H2 0.9500
N1—C2 1.350 (4) C3—C4 1.388 (4)
N1—C1 1.480 (4) C3—H3 0.9500
N2—C7 1.139 (4) C4—C5 1.390 (4)
C1—H1A 0.9800 C4—C7 1.451 (4)
C1—H1B 0.9800 C5—C6 1.381 (4)
C1—H1C 0.9800 C5—H5 0.9500
C2—C3 1.370 (4) C6—H6 0.9500
C6—N1—C2 121.4 (2) C2—C3—H3 120.5
C6—N1—C1 119.8 (2) C4—C3—H3 120.5
C2—N1—C1 118.7 (2) C3—C4—C5 119.8 (3)
N1—C1—H1A 109.5 C3—C4—C7 120.6 (3)
N1—C1—H1B 109.5 C5—C4—C7 119.5 (3)
H1A—C1—H1B 109.5 C6—C5—C4 118.8 (3)
N1—C1—H1C 109.5 C6—C5—H5 120.6
H1A—C1—H1C 109.5 C4—C5—H5 120.6
H1B—C1—H1C 109.5 N1—C6—C5 120.3 (3)
N1—C2—C3 120.6 (3) N1—C6—H6 119.9
N1—C2—H2 119.7 C5—C6—H6 119.9
C3—C2—H2 119.7 N2—C7—C4 176.3 (3)
C2—C3—C4 119.0 (3)
C6—N1—C2—C3 −1.6 (4) C7—C4—C5—C6 175.8 (3)
C1—N1—C2—C3 177.5 (3) C2—N1—C6—C5 2.4 (4)
N1—C2—C3—C4 −1.1 (4) C1—N1—C6—C5 −176.7 (3)
C2—C3—C4—C5 2.9 (4) C4—C5—C6—N1 −0.5 (4)
C2—C3—C4—C7 −175.0 (3) C3—C4—C7—N2 76 (5)
C3—C4—C5—C6 −2.2 (4) C5—C4—C7—N2 −102 (5)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C3—H3···N2i 0.95 2.58 3.434 (4) 149
C1—H1B···N2ii 0.98 2.71 3.513 (4) 140
C1—H1A···I1iii 0.98 3.04 3.999 (3) 166
C1—H1C···I1iv 0.98 3.06 3.870 (3) 141
C2—H2···I1v 0.95 2.99 3.796 (3) 144
C5—H5···I1vi 0.95 2.94 3.839 (3) 158
C6—H6···I1iii 0.95 3.01 3.916 (3) 161

Symmetry codes: (i) −x+2, −y, −z; (ii) x+1/2, −y+1/2, z+1/2; (iii) −x+1, −y+1, −z+1; (iv) x−1/2, −y+1/2, z−1/2; (v) x+1/2, −y+1/2, z−1/2; (vi) x−1, y, z−1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SU2473).

References

  1. Bruker (2009). SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bruker (2010). APEX2 Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Koplitz, L. V., Bay, K. D., DiGiovanni, N. & Mague, J. T. (2003). J. Chem. Crystallogr. 33, 391–402.
  4. Koplitz, L. V., Mague, J. T., Kammer, M. N., McCormick, C. A., Renfro, H. E. & Vumbaco, D. J. (2012). Acta Cryst. E68, o1653. [DOI] [PMC free article] [PubMed]
  5. Lalancette, R. A., Furey, W., Costanzo, J. N., Hemmes, P. R. & Jordan, F. (1978). Acta Cryst. B34, 2950–2953.
  6. Mague, J. T., Ivie, R. M., Hartsock, R. W., Koplitz, L. V. & Spulak, M. (2005). Acta Cryst. E61, o851–o853.
  7. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812032230/su2473sup1.cif

e-68-o2514-sup1.cif (16KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812032230/su2473Isup2.hkl

e-68-o2514-Isup2.hkl (88.3KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812032230/su2473Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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