Abstract
In the title compound, C15H12ClFN2O5, molecules are packed in the crystal lattice in a parallel fashion sustained by various C—H⋯O [C⋯O = 3.065 (5)–3.537 (5) Å] and C—H⋯Cl [3.431 (5)–3.735 (4) Å] interactions.
Related literature
For the biological activities of fluoroquinolone derivatives, see: Li et al. (2000 ▶); Mitscher (2005 ▶). For the synthesis of the title compound, see: Al-Qawasmeh et al. (2009 ▶); Al-Hiari et al. (2006 ▶).
Experimental
Crystal data
C15H12ClFN2O5
M r = 354.72
Triclinic,
a = 8.2339 (16) Å
b = 9.1523 (18) Å
c = 10.736 (2) Å
α = 85.60 (3)°
β = 81.20 (3)°
γ = 74.13 (3)°
V = 768.5 (3) Å3
Z = 2
Mo Kα radiation
μ = 0.29 mm−1
T = 291 K
0.96 × 0.35 × 0.21 mm
Data collection
Oxford Diffraction Xcalibur Eos diffractometer
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.857, T max = 1.000
4468 measured reflections
2713 independent reflections
1617 reflections with I > 2σ(I)
R int = 0.031
Refinement
R[F 2 > 2σ(F 2)] = 0.060
wR(F 2) = 0.195
S = 1.05
2713 reflections
218 parameters
H-atom parameters constrained
Δρmax = 0.29 e Å−3
Δρmin = −0.26 e Å−3
Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812011373/ds2180sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812011373/ds2180Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812011373/ds2180Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C14—H14A⋯O1i | 0.97 | 2.54 | 3.489 (4) | 167 |
| C14—H14B⋯O1ii | 0.97 | 2.51 | 3.471 (5) | 172 |
| C15—H15A⋯O2iii | 0.98 | 2.58 | 3.537 (5) | 165 |
| C4—H4A⋯O2iv | 0.93 | 2.71 | 3.065 (5) | 104 |
| C13—H13A⋯O4ii | 0.97 | 2.71 | 3.439 (5) | 132 |
| C11—H11A⋯Cl1v | 0.97 | 2.91 | 3.431 (5) | 115 |
| C13—H13A⋯Cl1vi | 0.97 | 2.89 | 3.735 (4) | 146 |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
; (v)
; (vi)
.
Acknowledgments
The author gratefully acknowledges financial support from the Deanship of Scientific Research at the University of Jordan (grant No. 7/1005/2006). Dr Murad AlDamen is acknowledged for collecting the data.
supplementary crystallographic information
Comment
Fluoroquinolone derivatives have been widely investigated as drugs against bacterial infections. Ciprofloxacine, one derivative of fluoroquinolone, represents one of the most effective antiinfectious drugs currently in clinical use (Li et al., 2000; Mitscher 2005). In the present paper, we describe the title compound, I, which has been synthesized from 2,4,-di chloro-5-fluoro-3-nitrobenzoic acid according to the published literature (Al-Hiari et al., 2006) and (Al-Qawasmeh et al., 2009). The title compound is an important synthetic intermediate for the synthesis of the analogues of the antimicrobial drug ciprofloxcaine. The title molecule crystallizes in the centrosymmetric triclinic space group P-1. In the crystal structure of (I), the molecules are held together by C—H···O [3.065 (5)-3.537 (5) Å] and C—H···Cl [3.431 (5)-3.735 (4) Å] (Table 1).
Experimental
The title compound was synthesized according to the published literature (Al-Hiari et al., 2006) and it has been recrystallized from hot ethanol to produce a yellow crystalline material
Refinement
Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc.and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. The H atom was located from difference Fourier syntheses and its position and isotropic displacement parameter refined freely.
Figures
Fig. 1.
Molecular structure of the title compound. The thermal ellipsoids are drawn at the 30% probability level.
Fig. 2.
Molecular packing displaying C–H···Cl and C–H···O interactions in the title compound (I).
Crystal data
| C15H12ClFN2O5 | F(000) = 364 |
| Mr = 354.72 | none |
| Triclinic, P1 | Dx = 1.533 Mg m−3 |
| Hall symbol: -P 1 | Melting point: 438 K |
| a = 8.2339 (16) Å | Mo Kα radiation, λ = 0.71073 Å |
| b = 9.1523 (18) Å | Cell parameters from 1074 reflections |
| c = 10.736 (2) Å | θ = 3.1–29.0° |
| α = 85.60 (3)° | µ = 0.29 mm−1 |
| β = 81.20 (3)° | T = 291 K |
| γ = 74.13 (3)° | Needle, yellow |
| V = 768.5 (3) Å3 | 0.96 × 0.35 × 0.21 mm |
| Z = 2 |
Data collection
| Oxford Diffraction Xcalibur Eos diffractometer | 2713 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 1617 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.031 |
| Detector resolution: 16.0534 pixels mm-1 | θmax = 25.0°, θmin = 3.1° |
| ω scans | h = −8→9 |
| Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | k = −8→10 |
| Tmin = 0.857, Tmax = 1.000 | l = −12→10 |
| 4468 measured reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.060 | H-atom parameters constrained |
| wR(F2) = 0.195 | w = 1/[σ2(Fo2) + (0.0824P)2 + 0.0377P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.05 | (Δ/σ)max < 0.001 |
| 2713 reflections | Δρmax = 0.29 e Å−3 |
| 218 parameters | Δρmin = −0.26 e Å−3 |
| 0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.013 (5) |
Special details
| Experimental. CrysAlisPro, Agilent Technologies, Version 1.171.35.11 Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. (CrysAlisPro; Oxford Diffraction, 2009) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc.and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. The H atom was located from difference Fourier syntheses and its position and isotropic displacement parameter refined freely. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.12355 (14) | 0.02366 (11) | 0.15569 (10) | 0.0800 (4) | |
| N2 | 0.4807 (4) | −0.2165 (3) | −0.2558 (3) | 0.0577 (8) | |
| F1 | 0.1920 (3) | 0.2933 (2) | 0.0257 (2) | 0.0921 (8) | |
| N1 | 0.2887 (5) | −0.2409 (3) | 0.0032 (3) | 0.0651 (8) | |
| O1 | 0.5691 (4) | 0.1923 (3) | −0.3780 (3) | 0.0833 (9) | |
| C1 | 0.3081 (4) | −0.0978 (3) | −0.0616 (3) | 0.0571 (9) | |
| O3 | 0.1470 (4) | −0.2615 (3) | 0.0265 (3) | 0.0833 (9) | |
| C3 | 0.2613 (5) | 0.1687 (4) | −0.0426 (4) | 0.0663 (10) | |
| O5 | 0.8693 (4) | −0.2246 (3) | −0.5300 (3) | 0.0892 (10) | |
| O4 | 0.8073 (4) | 0.0240 (3) | −0.5725 (3) | 0.0872 (9) | |
| C7 | 0.5977 (5) | −0.2042 (4) | −0.3557 (3) | 0.0616 (10) | |
| H7A | 0.6527 | −0.2921 | −0.3992 | 0.074* | |
| O2 | 0.4183 (4) | −0.3294 (3) | 0.0328 (3) | 0.0830 (9) | |
| C2 | 0.2348 (4) | 0.0321 (4) | 0.0076 (3) | 0.0611 (9) | |
| C5 | 0.4362 (4) | 0.0483 (4) | −0.2238 (3) | 0.0572 (9) | |
| C9 | 0.5534 (5) | 0.0667 (4) | −0.3412 (4) | 0.0607 (9) | |
| C6 | 0.4075 (4) | −0.0917 (3) | −0.1800 (3) | 0.0544 (9) | |
| C8 | 0.6428 (5) | −0.0756 (4) | −0.3988 (3) | 0.0615 (10) | |
| C10 | 0.7786 (5) | −0.0812 (4) | −0.5092 (4) | 0.0673 (10) | |
| C15 | 0.4290 (5) | −0.3592 (4) | −0.2387 (4) | 0.0669 (11) | |
| H15A | 0.4878 | −0.4359 | −0.1803 | 0.080* | |
| C4 | 0.3601 (5) | 0.1772 (4) | −0.1551 (4) | 0.0668 (11) | |
| H4A | 0.3768 | 0.2704 | −0.1862 | 0.080* | |
| C14 | 0.3847 (5) | −0.4180 (4) | −0.3509 (4) | 0.0797 (13) | |
| H14A | 0.4181 | −0.5271 | −0.3605 | 0.096* | |
| H14B | 0.3885 | −0.3580 | −0.4292 | 0.096* | |
| C13 | 0.2480 (5) | −0.3550 (4) | −0.2451 (4) | 0.0774 (12) | |
| H13A | 0.1693 | −0.2570 | −0.2595 | 0.093* | |
| H13B | 0.1989 | −0.4262 | −0.1907 | 0.093* | |
| C11 | 1.0073 (6) | −0.2448 (5) | −0.6353 (5) | 0.1002 (16) | |
| H11A | 0.9628 | −0.2012 | −0.7124 | 0.120* | |
| H11B | 1.0908 | −0.1937 | −0.6197 | 0.120* | |
| C12 | 1.0855 (8) | −0.4041 (6) | −0.6479 (6) | 0.146 (3) | |
| H12A | 1.1749 | −0.4193 | −0.7182 | 0.219* | |
| H12B | 1.0016 | −0.4540 | −0.6617 | 0.219* | |
| H12C | 1.1322 | −0.4457 | −0.5722 | 0.219* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0797 (8) | 0.0847 (8) | 0.0611 (7) | −0.0052 (6) | 0.0105 (5) | −0.0156 (5) |
| N2 | 0.0693 (19) | 0.0411 (14) | 0.0518 (19) | −0.0083 (13) | 0.0134 (15) | −0.0013 (12) |
| F1 | 0.0937 (18) | 0.0661 (13) | 0.104 (2) | −0.0100 (12) | 0.0191 (15) | −0.0361 (12) |
| N1 | 0.075 (2) | 0.0571 (18) | 0.053 (2) | −0.0090 (17) | 0.0059 (17) | −0.0042 (14) |
| O1 | 0.107 (2) | 0.0508 (14) | 0.083 (2) | −0.0210 (14) | 0.0142 (17) | 0.0036 (13) |
| C1 | 0.057 (2) | 0.0463 (18) | 0.061 (2) | −0.0079 (16) | 0.0012 (18) | −0.0004 (16) |
| O3 | 0.080 (2) | 0.0817 (18) | 0.079 (2) | −0.0246 (16) | 0.0223 (16) | −0.0017 (15) |
| C3 | 0.071 (2) | 0.0511 (19) | 0.071 (3) | −0.0066 (18) | 0.001 (2) | −0.0195 (18) |
| O5 | 0.084 (2) | 0.0671 (16) | 0.091 (2) | −0.0053 (15) | 0.0381 (17) | −0.0004 (15) |
| O4 | 0.089 (2) | 0.0769 (17) | 0.084 (2) | −0.0202 (16) | 0.0145 (17) | 0.0147 (15) |
| C7 | 0.066 (2) | 0.0482 (18) | 0.056 (2) | −0.0011 (17) | 0.0079 (19) | 0.0019 (16) |
| O2 | 0.093 (2) | 0.0639 (15) | 0.080 (2) | −0.0013 (15) | −0.0148 (17) | 0.0056 (14) |
| C2 | 0.054 (2) | 0.063 (2) | 0.057 (2) | −0.0038 (17) | 0.0024 (18) | −0.0075 (17) |
| C5 | 0.061 (2) | 0.0502 (18) | 0.055 (2) | −0.0107 (16) | 0.0004 (18) | −0.0015 (16) |
| C9 | 0.066 (2) | 0.0518 (19) | 0.059 (2) | −0.0126 (17) | −0.0004 (19) | 0.0021 (16) |
| C6 | 0.055 (2) | 0.0463 (18) | 0.054 (2) | −0.0047 (15) | 0.0003 (17) | −0.0010 (15) |
| C8 | 0.064 (2) | 0.056 (2) | 0.057 (2) | −0.0111 (17) | 0.0043 (19) | 0.0020 (16) |
| C10 | 0.067 (2) | 0.068 (2) | 0.058 (3) | −0.012 (2) | 0.0045 (19) | 0.0027 (19) |
| C15 | 0.080 (3) | 0.0407 (18) | 0.063 (3) | −0.0031 (18) | 0.017 (2) | 0.0002 (16) |
| C4 | 0.074 (3) | 0.0480 (19) | 0.071 (3) | −0.0110 (18) | 0.004 (2) | −0.0055 (17) |
| C14 | 0.109 (3) | 0.0484 (19) | 0.071 (3) | −0.021 (2) | 0.027 (2) | −0.0162 (18) |
| C13 | 0.081 (3) | 0.057 (2) | 0.084 (3) | −0.017 (2) | 0.023 (2) | −0.0202 (19) |
| C11 | 0.081 (3) | 0.094 (3) | 0.096 (4) | −0.007 (3) | 0.047 (3) | 0.001 (3) |
| C12 | 0.147 (5) | 0.108 (4) | 0.131 (5) | 0.004 (4) | 0.075 (4) | −0.005 (4) |
Geometric parameters (Å, º)
| Cl1—C2 | 1.716 (4) | C5—C6 | 1.399 (4) |
| N2—C7 | 1.347 (4) | C5—C9 | 1.494 (5) |
| N2—C6 | 1.396 (4) | C9—C8 | 1.442 (5) |
| N2—C15 | 1.471 (4) | C8—C10 | 1.494 (5) |
| F1—C3 | 1.345 (4) | C15—C14 | 1.487 (5) |
| N1—O3 | 1.218 (4) | C15—C13 | 1.492 (5) |
| N1—O2 | 1.220 (4) | C15—H15A | 0.9800 |
| N1—C1 | 1.471 (4) | C4—H4A | 0.9300 |
| O1—C9 | 1.221 (4) | C14—C13 | 1.498 (5) |
| C1—C2 | 1.391 (5) | C14—H14A | 0.9700 |
| C1—C6 | 1.408 (5) | C14—H14B | 0.9700 |
| C3—C4 | 1.358 (5) | C13—H13A | 0.9700 |
| C3—C2 | 1.382 (5) | C13—H13B | 0.9700 |
| O5—C10 | 1.336 (5) | C11—C12 | 1.431 (7) |
| O5—C11 | 1.459 (5) | C11—H11A | 0.9700 |
| O4—C10 | 1.192 (4) | C11—H11B | 0.9700 |
| C7—C8 | 1.357 (4) | C12—H12A | 0.9600 |
| C7—H7A | 0.9300 | C12—H12B | 0.9600 |
| C5—C4 | 1.384 (5) | C12—H12C | 0.9600 |
| C7—N2—C6 | 118.9 (3) | N2—C15—C14 | 117.5 (3) |
| C7—N2—C15 | 117.2 (3) | N2—C15—C13 | 119.2 (3) |
| C6—N2—C15 | 123.7 (3) | C14—C15—C13 | 60.4 (3) |
| O3—N1—O2 | 124.7 (3) | N2—C15—H15A | 116.1 |
| O3—N1—C1 | 119.0 (3) | C14—C15—H15A | 116.1 |
| O2—N1—C1 | 116.3 (3) | C13—C15—H15A | 116.1 |
| C2—C1—C6 | 121.3 (3) | C3—C4—C5 | 120.6 (3) |
| C2—C1—N1 | 115.2 (3) | C3—C4—H4A | 119.7 |
| C6—C1—N1 | 123.2 (3) | C5—C4—H4A | 119.7 |
| F1—C3—C4 | 120.4 (3) | C15—C14—C13 | 60.0 (3) |
| F1—C3—C2 | 118.0 (3) | C15—C14—H14A | 117.8 |
| C4—C3—C2 | 121.6 (3) | C13—C14—H14A | 117.8 |
| C10—O5—C11 | 115.8 (3) | C15—C14—H14B | 117.8 |
| N2—C7—C8 | 126.1 (3) | C13—C14—H14B | 117.8 |
| N2—C7—H7A | 116.9 | H14A—C14—H14B | 114.9 |
| C8—C7—H7A | 116.9 | C15—C13—C14 | 59.7 (2) |
| C3—C2—C1 | 118.4 (3) | C15—C13—H13A | 117.8 |
| C3—C2—Cl1 | 120.0 (3) | C14—C13—H13A | 117.8 |
| C1—C2—Cl1 | 121.5 (3) | C15—C13—H13B | 117.8 |
| C4—C5—C6 | 120.2 (3) | C14—C13—H13B | 117.8 |
| C4—C5—C9 | 116.7 (3) | H13A—C13—H13B | 114.9 |
| C6—C5—C9 | 123.1 (3) | C12—C11—O5 | 108.5 (4) |
| O1—C9—C8 | 126.4 (3) | C12—C11—H11A | 110.0 |
| O1—C9—C5 | 120.5 (3) | O5—C11—H11A | 110.0 |
| C8—C9—C5 | 113.1 (3) | C12—C11—H11B | 110.0 |
| N2—C6—C5 | 117.9 (3) | O5—C11—H11B | 110.0 |
| N2—C6—C1 | 124.2 (3) | H11A—C11—H11B | 108.4 |
| C5—C6—C1 | 117.9 (3) | C11—C12—H12A | 109.5 |
| C7—C8—C9 | 119.6 (3) | C11—C12—H12B | 109.5 |
| C7—C8—C10 | 119.8 (3) | H12A—C12—H12B | 109.5 |
| C9—C8—C10 | 120.6 (3) | C11—C12—H12C | 109.5 |
| O4—C10—O5 | 122.6 (4) | H12A—C12—H12C | 109.5 |
| O4—C10—C8 | 126.8 (4) | H12B—C12—H12C | 109.5 |
| O5—C10—C8 | 110.6 (3) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C14—H14A···O1i | 0.97 | 2.54 | 3.489 (4) | 167 |
| C14—H14B···O1ii | 0.97 | 2.51 | 3.471 (5) | 172 |
| C15—H15A···O2iii | 0.98 | 2.58 | 3.537 (5) | 165 |
| C4—H4A···O2iv | 0.93 | 2.71 | 3.065 (5) | 104 |
| C13—H13A···O4ii | 0.97 | 2.71 | 3.439 (5) | 132 |
| C11—H11A···Cl1v | 0.97 | 2.91 | 3.431 (5) | 115 |
| C13—H13A···Cl1vi | 0.97 | 2.89 | 3.735 (4) | 146 |
Symmetry codes: (i) x, y−1, z; (ii) −x+1, −y, −z−1; (iii) −x+1, −y−1, −z; (iv) −x+1, −y, −z; (v) x+1, y, z−1; (vi) −x, −y, −z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: DS2180).
References
- Al-Hiari, Y. H., Khanfar, M. A., Qaisi, A. M., Abu Shuheil, M. Y., Elabadelah, M. M. & Boese, R. (2006). Heterocycles, pp. 1163–1172.
- Al-Qawasmeh, R. A., Zahra, J. A., Zani, F., Vicini, P., Boese, B. & El-Abadelah, M. M. (2009). Arkivoc, pp. 322–336.
- Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.
- Li, Q., Mitscher, L. A. & Shen, L. L. (2000). Med. Res. Rev. 20, 231–293. [DOI] [PubMed]
- Mitscher, L. A. (2005). Chem. Rev. 105, 559–592. [DOI] [PubMed]
- Oxford Diffraction (2009). CrysAlis PRO Oxford Diffraction Ltd, Yarnton, Oxfordshire, England.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812011373/ds2180sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812011373/ds2180Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812011373/ds2180Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


