Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1978 Jul;5(7):2405–2423. doi: 10.1093/nar/5.7.2405

Periodic organisation of foldback sequences in Physarum polycephalum nuclear DNA.

N Hardman, P L Jack
PMCID: PMC342173  PMID: 566909

Abstract

Nuclear DNA from the slime mould Physarum polycephalum is shown to contain interspersed inverted repeat sequences, such that denatured fragments of DNA containing pairs of these sequences form intra-chain duplexes under appropriate conditions. The organisation and distribution of the nucleotide sequences responsible for the formation of foldback structures in Physarum DNA have been investigated using the electron microscope. The majority of foldback duplexes have sizes ranging up to 800 base pairs, and about 60-80% of DNA molecules 2.2 X 10(4) bases in length contain interspersed foldback elements. The size of individual foldback duplexes, and also the length of the intervening sequences which separate them, are non-random. The results can best be explained by a model in which separate foldback foci in Physarum DNA are spaced periodically at regular intervals. The regions containing foldback foci are thought to contain smaller, tandemly-arranged sequences of discrete sizes, in some cases related to other nucleotide sequences of a similar nature in the same locality in Physarum DNA.

Full text

PDF
2405

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bell A. J., Hardman N. Characterization of foldback sequences in hamster DNA using electron microsocpy. Nucleic Acids Res. 1977 Jan;4(1):247–268. doi: 10.1093/nar/4.1.247. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Cech T. R., Hearst J. E. An electron microscopic study of mouse foldback DNA. Cell. 1975 Aug;5(4):429–446. doi: 10.1016/0092-8674(75)90062-8. [DOI] [PubMed] [Google Scholar]
  3. Cooke D. J., Dee J. Methods for the isolation and analysis of plasmodial mutants in Physarum polycephalum. Genet Res. 1974 Oct;24(2):175–187. doi: 10.1017/s0016672300015202. [DOI] [PubMed] [Google Scholar]
  4. Davis R. W., Hyman R. W. A study in evolution: the DNA base sequence homology between coliphages T7 and T3. J Mol Biol. 1971 Dec 14;62(2):287–301. doi: 10.1016/0022-2836(71)90428-1. [DOI] [PubMed] [Google Scholar]
  5. Deininger P. L., Schmid C. W. An electron microscope study of the DNA sequence organization of the human genome. J Mol Biol. 1976 Sep 25;106(3):773–790. doi: 10.1016/0022-2836(76)90264-3. [DOI] [PubMed] [Google Scholar]
  6. Dott P. J., Chuang C. R., Saunders G. F. Inverted repetitive sequences in the human genome. Biochemistry. 1976 Sep 7;15(18):4120–4125. doi: 10.1021/bi00663a032. [DOI] [PubMed] [Google Scholar]
  7. Firtel R. A., Bonner J. Characterization of the genome of the cellular slime mold Dictyostelium discoideum. J Mol Biol. 1972 May 28;66(3):339–361. doi: 10.1016/0022-2836(72)90419-6. [DOI] [PubMed] [Google Scholar]
  8. Fouquet H., Bierweiler B., Sauer H. W. Reassociation kinetics of nuclear DNA from Physarum polycephalum. Eur J Biochem. 1974 May 15;44(2):407–410. doi: 10.1111/j.1432-1033.1974.tb03498.x. [DOI] [PubMed] [Google Scholar]
  9. Hardman N., Jack P. L. Characterization of foldback sequences in Physarum polycephalum nuclear DNA using the electron microscope. Eur J Biochem. 1977 Apr 1;74(2):275–283. doi: 10.1111/j.1432-1033.1977.tb11391.x. [DOI] [PubMed] [Google Scholar]
  10. Jack P. L., Hardman N. Inverted repeat sequences in Physarum polycephalum nuclear deoxyribonucleic acid [proceedings]. Biochem Soc Trans. 1977;5(3):678–679. doi: 10.1042/bst0050678. [DOI] [PubMed] [Google Scholar]
  11. McConaughy B. L., Laird C. D., McCarthy B. J. Nucleic acid reassociation in formamide. Biochemistry. 1969 Aug;8(8):3289–3295. doi: 10.1021/bi00836a024. [DOI] [PubMed] [Google Scholar]
  12. Mohberg J., Rusch H. P. Isolation and DNA content of nuclei of Physarum polycephalum. Exp Cell Res. 1971 Jun;66(2):305–316. doi: 10.1016/0014-4827(71)90682-3. [DOI] [PubMed] [Google Scholar]
  13. Schmid C. W., Manning J. E., Davidson N. Inverted repeat sequences in the Drosophila genome. Cell. 1975 Jun;5(2):159–172. doi: 10.1016/0092-8674(75)90024-0. [DOI] [PubMed] [Google Scholar]
  14. Vogt V. M., Braun R. Structure of ribosomal DNA in Physarum polycephalum. J Mol Biol. 1976 Sep 25;106(3):567–587. doi: 10.1016/0022-2836(76)90252-7. [DOI] [PubMed] [Google Scholar]
  15. Wilson D. A., Thomas C. A., Jr Palindromes in chromosomes. J Mol Biol. 1974 Mar 25;84(1):115–138. doi: 10.1016/0022-2836(74)90216-2. [DOI] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES