Summary
In sensory biology, a major outstanding question is how sensory receptor cells minimize noise while maximizing signal to set the detection threshold. This optimization could be problematic because the origin of both the signals and the limiting noise in most sensory systems is believed to lie in stimulus transduction. Signal processing in receptor cells can improve the signal-to-noise ratio. However, neural circuits can further optimize detection threshold by pooling signals from sensory receptor cells and processing them using a combination of linear and nonlinear filtering mechanisms. In the visual system, the noise limiting light detection has been assumed to arise from stimulus transduction in rod photoreceptors. In this context the evolutionary optimization of the signal-to-noise ratio in the retina has proven critical in allowing visual sensitivity to approach the limits set by the quantal nature of light. Here we discuss how noise in the mammalian retina is mitigated to allow for highly sensitive night vision.
Keywords: linear filtering, nonlinear threshold, retinal circuitry, signal-to-noise ratio, signal transfer
Introduction
Key to the survival of any organism is the ability to extract sensory information about its environment in the form of light, odors, chemicals, sounds, etc. These cues are essential for directing organisms to nourishment, in evading predators, and in reproduction. Common to all senses are specialized receptor cells that interact with and transduce stimuli into a change in the cell's neurotransmitter release, allowing stimuli to be encoded in neural circuitry. The signals and noise of the sensory receptors themselves set the fundamental limits for any sensation, and many sensory systems have consequently evolved receptors and neural pathways to encode information that approaches the limitations set by the physical nature of the stimulus (i.e. a quantum of light).
Near absolute threshold, sensory systems face the problem of maximizing their sensitivity under conditions where the stimulus is sparse or weak, and the amplification of the signal becomes essential (e.g. if the response of a single absorbed photon in a few rod photoreceptors is to be reliably transmitted to the retinal output). However, amplification is only beneficial if the signal can be amplified more efficiently than the noise. The convergence of the signal in neural circuits improves sensitivity for downstream signals, but will also result in the pooling of intrinsic noise from receptor cells that are not detecting the stimulus. Thus, by virtue of how the system is constructed, the intrinsic noise within the receptor cells and the neural circuitry remain important in setting the detection limit for any sensory system. One of the important tasks in sensory processing then becomes how to minimize intrinsic noise while maximizing the signal, a task complicated by the fact that stimulus transduction also produces noise.
The detection of light near absolute threshold for the visual system provides an opportunity to study how the processing of signals and noise is optimized. Since both signals and noise can be reliably measured within rod photoreceptors and defined rod pathways, and the light stimulus can be controlled accurately, it is possible to evaluate how the magnitude of signals evolves with respect to intrinsic noise. Here we describe mechanisms in the mammalian retina that allow the optimization of signal-to-noise ratio (SNR) for the detection of light.
Retinal control of signals and noise near visual threshold
Dark-adapted behavioral threshold of human observers requires a light flash delivering only a few photons, activating a small fraction of the rod photoreceptors in the retina [1, 2]. Such exquisite sensitivity requires that rod photoreceptors reliably signal the absorption of single photons, and that this signal is reliably transmitted to the retinal output (reviewed in [3]). Rod photoreceptors across all studied mammalian species including mice, rats, cats, guinea pigs, rabbits, and monkeys can signal the absorption of single photons [4-7], although their SNR may vary. How the retina establishes this exquisite performance despite these variations in SNR is informative about how stimulus transduction and neural processing shape the retinal output and visual performance.
Signals from individual rod photoreceptors are conveyed through a highly conserved pathway in the mammalian retina called the rod bipolar pathway (Fig. 1) [8, 9]. In this pathway rod outputs are pooled by a rod ON bipolar cell, whose outputs are in turn pooled by a depolarizing AII amacrine cell. These signals are then relayed through cone photoreceptor circuits to the retinal output, the ganglion cells, which may ultimately pool the output of thousands of rods [10].
Noise in rod phototransduction, or at any subsequent stage in this pathway, can potentially reduce the discriminability of the signal and elevate visual threshold. We discuss the constraints noise places on signal detection and the retinal mechanisms that maximize signals and minimize noise in the context of the retinal circuitry. Emphasis will be placed on how noise at each stage of processing (as annotated in Fig. 1) is mitigated to improve the fidelity of light-driven signals.
Noise in the rod photocurrent obscures the single-photon response
Vision is initiated in the outer segments of rod photoreceptor cells. When a rhodopsin molecule absorbs a photon of light a G-protein coupled signaling cascade is triggered leading to the closure of cGMP-gated channels (Fig. 2A). The closure of cGMP-gated channels, which are normally open in darkness and depolarize the cell's membrane potential, causes a small graded hyperpolarization in membrane potential of approximately 1 mV [11]. This light-evoked hyperpolarization in turn reduces the release of glutamate from the rod's synaptic terminal, or spherule, and constitutes the signal passed on to the second order rod bipolar cells. The high amplification of signals by the rod phototransduction cascade is required to allow the magnitude of the single-photon response to exceed the cell's intrinsic noise. However, amplification in the transduction machinery inevitably introduces noise into the system, as stochastic events unrelated to the signal are also amplified. This noise is passed forward in the retinal circuitry and threatens to obscure the detection of signals. Under circumstances where the rods do not generate noise in darkness, visual threshold may theoretically reach limits imposed by the Poisson statistics of light absorption. In reality, however, two major forms of intrinsic noise in the rod photocurrent (discrete and continuous noise) must ultimately be handled by the neural circuits that relay light-evoked signals to higher visual centers.
In total darkness recordings of the rod photocurrent reveal discrete noise events that have an amplitude and time course identical to the single-photon response, and are believed to arise from the spontaneous thermal activation of rhodopsin (Fig. 2A) [12]. Since these events cannot be distinguished from the single-photon response they produce a ‘dark light’ [13, 14] that has been proposed set the lower limits for light detection [15, 16]. In principle other forms of noise can be discriminated from light-evoked signals in latter stages of retinal processing using linear and nonlinear mechanisms (see below), but this is not possible when the noise and signal are indistinguishable. The only recourse for this system is to minimize the number of discrete noise events that occur, and consequently rhodopsin has evolved to maintain great stability in darkness. A mammalian rod contains on the order of 100,000,000 rhodopsin molecules and discrete noise events at 37°C occur at a rate of ~ 0.006 s-1 in primate rods [4] and ~ 0.01 s-1 in mouse rods [17]. On the basis of an individual rhodopsin molecule this means that spontaneous discrete noise events occur on average once every several hundreds of years. In amphibian retinas, both ganglion cell recordings and behavioral experiments have suggested that visual threshold is limited by the discrete noise [18, 19], consistent with interpretations from behavioral experiments on humans [1] and mice [20]. It should be noted, however, that the high sensitivity of vision near absolute threshold could be explained equally well with a low or high threshold number of absorbed photons depending on how much noise in the rods is assumed [3]. Thus historical notions that discrete noise solely limits detection threshold are arguable (see also [21]).
A single-photon response must not only be distinguished from discrete noise events, but also from continuous noise in the rod photocurrent. Continuous noise can be observed as continuous, low amplitude fluctuations in the rod photocurrent [22], with a probability of reaching the amplitude of the average single-photon response of ~ 0.005 s-1 in mouse rods [23]. This constantly present noise arises in the phototransduction cascade downstream of rhodopsin, which in toad rods has been shown as fluctuations in cGMP concentration caused by the spontaneous activation of the cGMP phosphodiesterase (PDE complex; Fig. 2A) [24]. Thus with low probability continuous noise could potentially contribute to the ‘dark light’ and limit visual threshold. Moreover, as opposed to the infrequently occurring discrete noise events, the continuous noise is constantly present in all rods. This poses problems for the pooling of the rod output by rod bipolar cells (see below). Although the higher probability of discrete compared to continuous noise events in generating false positive signals might seem to limit threshold at the level of the rods, both forms of noise will affect behavioral threshold by virtue of nonlinear processing of the rod output and rod convergence downstream in the retina. Thus, the relative contributions of these two forms of rod noise in setting visual threshold remains unresolved.
When considering noise in rod photoreceptors, a fundamental constraint is that cGMP-gated channels remain open in darkness allowing rods to maintain a relatively depolarized resting membrane potential (Fig. 2A). This arrangement may be beneficial for optimizing energy expenditure [25] and for the downstream processing of single-photon responses (see below), but the open channels will report fluctuations in cGMP concentration not associated with the light-driven signal. To some extent this noise is minimized as rods maintain their dark current using a small fraction of the available cGMP-gated channels [26] with a low unitary conductance [27, 28] due to a divalent permeating channel block [29, 30]. Such mechanisms could allow fine control of membrane potential by the phototransduction cascade, and thus attenuate noise in the gating of cGMP-gated channels.
Reproducibility reduces noise in the rod single-photon response
The single-photon response in rod photoreceptors by definition is initiated by the activation of a single rhodopsin molecule. Variations in the magnitude or time course of the single-photon response will degrade the ability to detect light. One might expect that a macroscopic response initiated by a single molecule would be subject to considerable noise due to the stochastic nature of interactions between molecules. However, the single-photon response of rod photoreceptors in both amphibians and mammals displays remarkable reproducibility, or a low coefficient of variation [5, 31-33]. Such reproducibility is believed to arise from the stereotyped shutoff of rhodopsin following its activation [5, 31, 32, 34], and will reduce noise in the signal itself. Such reproducibility is believed to allow the visual system to identify accurately the timing of arrival of single photons [35] and thus to optimize the temporal properties of signal transfer.
Linear filtering removes noise not associated with the single-photon response
It has been shown theoretically that linear bandpass filtering of the rod photocurrent can improve the fidelity of signals [36, 37], by removing noise with temporal frequencies not associated with the single-photon response [38]. Bandpass filtering would remove low temporal frequencies for events slower than the single-photon response and high temporal frequencies not associated with phototransduction. It should be noted that linear filtering of these signals can attenuate some continuous noise [22], but cannot be the dominant mechanism that removes noise from the rod photocurrent. This is because single-photon responses and continuous noise originate in the phototransduction cascade and are both controlled by the rate of cGMP turnover. Thus signals and noise are largely composed of similar temporal frequencies and linear filtering would consequently act on both, highlighting the need for a nonlinear mechanism to separate the two downstream [4]. However, some high-pass filtering is known to occur by virtue of the speeded responses in mammalian rod bipolar cells compared to rod photoresponses [39, 40], and recent evidence suggests this occurs in the in rods themselves in the photocurrent to photovoltage conversion [41]. Since bipolar cells preferentially report the rising phase of the rod photoresponse [37, 42], this type of linear filtering may improve the system's temporal properties, but for the detection limit this is of lesser importance.
Synaptic transmission between rods and rod bipolar cells is tuned for the transmission of small signals
Phototransduction in retinal photoreceptors generates graded changes in membrane potential following the absorption of photons. The ~ 1 mV hyperpolarization produced by photon absorption [11] needs to produce a change in glutamate release from the rod spherule that exceeds the noise associated with synaptic transmission. While open cGMP-gated channels in darkness might seem a poor strategy for minimizing sensory receptor cell noise, it is a ‘necessary evil’ for allowing robust synaptic transfer for small signals. By employing non-desensitizing Cav1.4 L-type Ca2+ channels [43, 44] along with the Ca2+-binding protein CABP4 to tune voltage sensitivity [45], the rod spherule can modulate finely the Ca2+ current with small graded changes in the membrane potential. Such modulation of the Ca2+ current, and vesicle release by proxy, is difficult if the membrane potential does not exceed the voltage threshold for activation for Ca2+ channels, or if Ca2+ channels are subject to voltage-dependent or Ca2+-dependent desensitization [46]. Thus, the dark membrane potential of rods is positioned for the Ca2+ channels to respond robustly for small changes in membrane potential. Moreover, assuming vesicle release from the rod spherule is a Poisson process (cf. [47]) the relatively depolarized dark membrane potential allows a high synaptic release rate, which will minimize relative fluctuations in vesicle release compared to lower mean rates of release.
A nonlinear threshold in rod bipolar cells eliminates noise from the array of rods
Rod bipolar cells in the mammalian retina serve as the first point for pooling of rod outputs, allowing convergence of 20-100 rods [48, 49]. Near visual threshold perhaps one rod in this pool might carry a single-photon response, while the remainder will report the transduction noise described above. It has long been appreciated that linearly pooling rod outputs will obscure the single-photon response carried in few rods by pooling continuous noise carried by the vast majority of rods [4]. Thus some nonlinear mechanism is required to maximize the SNR. A nonlinear threshold (henceforth ‘the threshold’) was suggested to improve SNR by eliminating noise from rods not absorbing photons [50]. As shown in Fig. 3, the relatively noisy rod photocurrent makes the discrimination of single-photon responses above the dark noise difficult (Fig. 3A, histogram). However if rod bipolar cells pool responses only from rods whose signals exceed threshold amplitude (Fig. 3A, dashed), their single-photon responses would become more discernable (Fig. 3B). The presence of such a threshold has been demonstrated in both mouse and rabbit retinas [7, 40, 51, 52]. While such a threshold would lead to the loss of more than half of single-photon responses, the elimination of the continuous rod noise from rods not absorbing photons (Fig. 3A, below dashed line) more than compensates for this lost signal. The suggested improvement in SNR for rod bipolar cells in the mouse retina may be more than 300-fold over the linear pooling of rod outputs [40].
The mechanism setting the position of the threshold is manifested in the dendrites of rod bipolar cells, which are unusual in that they employ a G-protein signaling cascade to invert the sign of the rod photoresponse into an ON signal (Fig. 2B). Despite the functional importance of ON responses for defining the receptive fields of neurons in higher visual areas, the components of this signaling cascade are still not fully elucidated. In darkness mGluR6 receptors on rod bipolar dendrites sense glutamate release from rods and activate a heterotrimeric G-protein, Gαo. Through unknown mechanisms Gαo and/or Gβγ close non-selective cation channels identified recently to be at least in part TRPM1 [53-55]. It should be noted that the effector molecule and the gating particle controlling the opening of TRPM1 remain unidentified, as are the major modulatory proteins controlling the sensitivity and time course of rod bipolar light responses (but see [56]). To separate single-photon responses from the continuous noise in rods the threshold position is set by saturation downstream of the mGluR6 receptors within this G-protein signaling cascade [57]. The activity of the mGluR6 cascade in darkness is sufficient to hold most of the TRPM1 channels closed, preventing noise in rod phototransduction or synaptic transmission from altering significantly the number of open transduction channels. This arrangement only allows sufficiently large single-photon responses to reduce glutamate release from rods enough to relieve saturation and open transduction channels, thereby acting as a threshold.
The location of saturation in the mGluR6 signaling pathway that sets the position of the threshold remains undefined due to the unknown identity of components downstream of Gαo. However, saturation probably resides downstream of Gαo and may potentially be set in the activity of the effector molecule that controls the gating particle of TRPM1, or in the open probability of TRPM1 itself [57, 58]. For the threshold position to separate optimally single-photon responses from noise, the amount of saturation within the mGluR6-signaling pathway needs to be set precisely. With respect to the probability distribution of single-photon response amplitudes and continuous noise [23, 40], saturation must produce a threshold position that is poised to separate signals and noise near the amplitude where the probability of observing either is equal (Fig. 4A). If the amount of saturation in mGluR6 signaling is too high, the high threshold position will exclude too much of the signal. If the amount of saturation in mGluR6 signaling is too low, the low threshold position will introduce too much noise. Thus postsynaptic processing in rod bipolar cells should be optimally tuned to the probability distributions of signals and noise in the rods for visual threshold to be optimized (see [23]).
How the threshold is set with respect to the probability distributions of single-photon response and dark noise amplitudes remains an important problem for retinal processing near visual threshold, especially given variations in the SNR of the rod photocurrent in different mammalian species. The SNR of macaque rod single-photon responses has been measured to be ~ 2-fold higher than for mouse rods [5, 23]. This greater separation of single-photon responses from continuous noise suggests reduced saturation in mGluR6 signaling compared to mouse rods, possibly allowing the macaque visual system to retain a greater fraction of single-photon responses near threshold. Recent evidence suggests that such optimization of saturation may be hard-wired into the mGluR6-signaling pathway, as the amount of saturation in rod bipolar cells of transgenic mice with altered probability distributions of rod single-photon response and dark noise amplitudes appears unaffected [23]. Identifying how saturation of the mGluR6 signaling pathway, and thus threshold position, is set will be important for understanding how mammalian species utilize common retinal circuitry to optimize visual threshold.
Pooling signals after removal of noise improves sensitivity
The high sensitivity of rod-mediated vision is achieved through amplification of the single-photon response in rods and the pooling of rod outputs by the retinal circuitry. Indeed, through the rod bipolar pathway a ganglion cell may sample the output of thousands of rod photoreceptors [10]. Convergence will ultimately improve a sensory system's sensitivity, but such a mechanism will pool both signals and noise. Thus the elimination of noise at the earliest point in signal processing before considerable pooling is critical, since once signal and noise with similar temporal characteristics are combined their separation becomes more difficult [40]. Consequently a threshold is applied at the dendritic tips of rod bipolar cells by virtue of saturation in the mGluR6 signaling cascade [57], and only then do rod bipolar cells pool the signal [40]. The amount of pooling will also influence the need for a threshold. As the number of pooled rods increases (assuming a fixed rod SNR), the probability distribution of the noise will increase more than the signal since a small fraction of the rods carry single-photon responses near visual threshold. As shown in Fig. 4 the rescaling of these distributions with respect to one another alters the optimal position for their separation. Thus, the optimal separation of the signal from the noise as the number of pooled rods increases requires a threshold with a higher position to attenuate the added noise (Fig. 4B). For instance estimates of rod convergence in rabbit retina are higher by ~ 5-fold compared to the mouse retina, and consequently the threshold in rabbits discards almost 90 % of the single-photon responses [7]. Similarly a threshold with a lower position would be required to separate optimally the signals from noise for fewer pooled rods (Fig. 4C). Such adjustments in saturation within the mGluR6 pathway would be expected to improve the detection of signals near threshold, and thus might be controlled differentially based on the SNR of the rod photocurrent in various mammalian species.
Multivesicular release at rod bipolar synaptic terminals selectively amplifies signals in AII amacrine cells
The signal from rod bipolar cells is passed on to AII amacrine cells, which receive convergent input from ~ 25 rod bipolar cells [10]. This convergence enhances signal detection, just as does convergence between rods and rod bipolar cells (see above). However the added noise from synaptic transmission will once again interfere with detection [59-61]. To overcome synaptic noise, the light-evoked signals in AII amacrine cells are boosted by coordinated multivesicular release (MVR) from the rod bipolar synaptic terminal. MVR will produce responses in the AII amacrine cells that are larger than the noise arising from the univesicular basal level of glutamate release [61]. Thus just as for rod-to-rod bipolar signal transmission, AII amacrine cells pool rod signals after noise is removed. Similar coordinated multivesicular release sites are also found at hair cell ribbon synapses [62, 63], suggesting MVR could impose a similar threshold to improve signal detection elsewhere. It should be noted that noise in AII amacrine cells is also partially mitigated by the electrical coupling of these cells with connexin 36 gap junctions [64]. Such a coupled network of cells will effectively reduce noise by providing the system with inertia against voltage fluctuations in individual AII amacrine cells [65-67].
A threshold for action potential generation in ganglion cells removes noise in their synaptic input
Ganglion cells serve as the conduit between light-evoked signals generated in the retina and higher visual centers, and are the main neurons in the retina that generate action potentials (or spikes). These cells respond to light by either increasing (ON cells) or decreasing (OFF cells) the number of spikes generated at their axon hillock (Fig. 1). It is appreciated that spike timing in ganglion cells is reproducible from trial to trial [68, 69], limited by variability in the light-evoked signals feeding into the ganglion cells [70]. Such variability in the spike generator limits the temporal precision of spikes, introducing ‘jitter’ into ganglion cell responses. However, relatively little is known about how control of spike generation influences signals near visual threshold (cf. [71, 72]). Control of spike generation could effectively introduce another threshold in the system, if subthreshold fluctuations are eliminated thereby enhancing SNR in the spike output [73]. By analogy to the threshold in rod bipolar cells and MVR at the rod bipolar-AII amacrine cell synapse (see above), following nonlinearity in spike generation there is another good opportunity to pool rod-driven signals.
Reducing receptor noise: Similarities and differences between sensory systems
Neural processing in most sensory systems requires the extraction of salient information from a sparse set of receptor cell inputs. The noise limiting stimulus detection has been suggested to arise from the transduction processes in sensory receptor cells themselves, since a physical stimulus interacting with proteins within sensory receptor cell specializations is inherently stochastic. Noise in transduction is ultimately reported through open channels in the cell membrane, thus the minimization of noise requires that sensory receptor cells maintain the fewest open channels possible at rest.
Rod photoreceptors may differ from other sensory receptor cells since in the absence of light transduction channels are open (although the properties of the open channels attempt to minimize noise). As described previously such an organization may ultimately improve the efficiency of signal transmission to rod bipolar cells. However, one general issue with the study of sensory systems is that our personal views bias us toward assumptions of what a system's output is optimized for. For instance, if rod phototransduction were optimized purely for light detection, it is curious why rods would be electrically-coupled to one another. Coupling would attenuate the signals in the minority of the rods absorbing a photon near visual threshold without impacting noise [74]. Perhaps mammalian rods and their circuitry are organized to attempt to optimize both their sensitivity and speed. Temporal resolution within the rod phototransduction cascade is improved by increasing the rate at which cGMP molecules are turned over [24, 75], leading to fluctuations in cGMP concentration (i.e. continuous noise) observed in the rod photocurrent. However, this noise can be largely eliminated in the retinal circuitry using a threshold in the rod bipolar cell dendrites [40, 50, 51]. Thus the circuitry carrying rod photoresponses to higher visual centers might allow the simultaneous optimization of both sensitivity and the temporal properties of stimulus transduction.
While rod photoreceptors maintain a standing current based on open cGMP-gated channels in darkness, this doesn't appear to be the strategy used by other sensory receptor cells. Olfactory receptor cells [76], taste receptor cells [77], hair cells [78], and the rhabdomeric photoreceptors of Drosophila [79] and Limulus [80] all appear to operate with few open channels at rest. Thus regardless of whether stimulus transduction requires a G-protein signaling or direct control of channel gating by the stimulus, or whether the stimulus produces graded potentials or action potentials, the resting state in these sensory receptor cells is more quiet.
It should be noted that the mechanisms by which signals from these sensory receptor cells are interpreted by their neural circuitries remain less well elucidated than for the visual system. The accessibility of retinal tissue and the relative precision with which the natural stimulus (light) can be delivered provides distinct advantages for the study of sensory processing. However the general principles of linear/ nonlinear filtering followed by pooling of receptor outputs could guide investigation into sensory processing for these systems.
Conclusions
While the remarkable sensitivity of stimulus transduction in sensory receptor cells has received much attention [12, 78, 81], the control of noise in sensory receptor cells, and within the neural circuits that carry sensory information to higher centers, is equally influential in setting a system's threshold. Such sensitivity is improved as sensory systems pool information from many receptor cells, but this pooling will also combine noise with the signals. Sensory systems can optimize signal detection through linear filtering to eliminate noise not associated with the signal and by applying thresholds at crucial (and preferably early) synapses in the pathway. The pooling of signals by the circuitry following the removal of noise will provide the cleanest representation of the signal for subsequent processing. The optimal removal of intrinsic noise is ultimately required for a sensory system to lower its threshold to reach the detection limit defined by the receptor SNR [23].
Acknowledgments
We thank Drs. Petri Ala-Laurila and Greg Field for helpful comments on the manuscript. APS is supported by NIH Grant EY17606 and a McKnight Scholar Award from the McKnight Endowment Fund for Neurosciences.
Abbreviations
- cGMP
cyclic guanosine monophosphate
- MVR
multivesicular release
- PDE
phosphodiesterase
- SNR
signal-to-noise ratio
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