Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1976 Jan;3(1):19–34. doi: 10.1093/nar/3.1.19

Specific spin-labeling of transfer ribonucleic acid molecules.

M Caron, H Dugas
PMCID: PMC342874  PMID: 175353

Abstract

The spin labels anhydride (ASL), bromoacetamide (BSL) and carbodiimide (CSL) were used to label selectively tRNAGlu, tRNA fMet and tRNAPhe from E. coli. The preparation and characterization of the sites of labeling of eight new spin-labeled tRNAs are described. The sites of labeling are: s2U using ASL, BSL and CLS and tRNAGlu; s4U using ASL and BSL on tRNAfMet and tRNAPhe; U-37 with CSL on tRNfMet; U-33 with CSL on tRNAPhe. The rare base X at position 47 of tRNAPhe has been acylated with a spin-labeled N-hydroxysuccinimide (HSL). The 3'end of unfractionated tRNA molecules has been chemically modified to a morpholino spin-labeled analogue (MSL). Their respective e.s.r. spectra are reported and discussed.

Full text

PDF
19

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Barrell B. G., Sanger F. The sequence of phenylalanine tRNA from E. coli. FEBS Lett. 1969 Jun;3(4):275–278. doi: 10.1016/0014-5793(69)80157-2. [DOI] [PubMed] [Google Scholar]
  2. Carbon J., David H., Studier M. H. Thiobases in Escherchia coli Transfer RNA: 2-Thiocytosine and 5-Methylaminomethyl-2-thiouracil. Science. 1968 Sep 13;161(3846):1146–1147. doi: 10.1126/science.161.3846.1146. [DOI] [PubMed] [Google Scholar]
  3. Caron M., Dugas H. A simple and rapid procedure for desalting nucleotide-containing solutions. J Chromatogr. 1974 Dec 4;101(1):228–230. doi: 10.1016/s0021-9673(01)94757-0. [DOI] [PubMed] [Google Scholar]
  4. Caron M., Dugas H. A spin label study of the thermal unfolding of secondary and tertiary structure in E. colic transfer RNAs. Nucleic Acids Res. 1976 Jan;3(1):35–47. doi: 10.1093/nar/3.1.35. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Chang S. E. Selective modification of cytidine and uridine residues in Escherichia coli formylmethionine transfer ribonucleic acid. J Mol Biol. 1973 Apr 15;75(3):533–547. doi: 10.1016/0022-2836(73)90459-2. [DOI] [PubMed] [Google Scholar]
  6. Dube S. K., Marcker K. A., Clark B. F., Cory S. The nucleotide sequence of N-formyl-methionyl-transfer RNA. Products of complete digestion with ribonuclease T-1 and pancreatic ribonuclease and derivation of their sequences. Eur J Biochem. 1969 Mar;8(2):244–255. doi: 10.1111/j.1432-1033.1969.tb00521.x. [DOI] [PubMed] [Google Scholar]
  7. Friedman S., Li H. J., Nakanishi K., Van Lear G. 3-(3-amino-3-carboxy-n-propyl)uridine. The structure of the nucleoside in Escherichia coli transfer ribonucleic acid that reacts with phenoxyacetoxysuccinimide. Biochemistry. 1974 Jul 2;13(14):2932–2937. doi: 10.1021/bi00711a024. [DOI] [PubMed] [Google Scholar]
  8. Gillam I., Blew D., Warrington R. C., von Tigerstrom M., Tener G. M. A general procedure for the isolation of specific transfer ribonucleic acids. Biochemistry. 1968 Oct;7(10):3459–3468. doi: 10.1021/bi00850a022. [DOI] [PubMed] [Google Scholar]
  9. Hara H., Horiuchi T., Saneyoshi M., Nishimura S. 4-Thiouridine-specific spin-labeling of E. coli transfer RNA. Biochem Biophys Res Commun. 1970 Jan 23;38(2):305–311. doi: 10.1016/0006-291x(70)90713-8. [DOI] [PubMed] [Google Scholar]
  10. Ho N. W., Gilham P. T. The reversible chemical modification of uracil, thymine, and guanine nucleotides and the modification of the action of ribonuclease on ribonucleic acid. Biochemistry. 1967 Dec;6(12):3632–3639. doi: 10.1021/bi00864a002. [DOI] [PubMed] [Google Scholar]
  11. Hoffman B. M., Schofield P., Rich A. Spin-labeled transfer RNA. Proc Natl Acad Sci U S A. 1969 Apr;62(4):1195–1202. doi: 10.1073/pnas.62.4.1195. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Kim S. H., Quigley G. J., Suddath F. L., McPherson A., Sneden D., Kim J. J., Weinzierl J., Rich A. Three-dimensional structure of yeast phenylalanine transfer RNA: folding of the polynucleotide chain. Science. 1973 Jan 19;179(4070):285–288. doi: 10.1126/science.179.4070.285. [DOI] [PubMed] [Google Scholar]
  13. Kimura F., Harada F., Nishimura S. Primary sequence of tRNA-Val-1 from Escherichia coli B. II. Isolation of large fragments by limited digestion with RNases, and overlapping of fragments to reduce the total primary sequence. Biochemistry. 1971 Aug 17;10(17):3277–3283. doi: 10.1021/bi00793a018. [DOI] [PubMed] [Google Scholar]
  14. McIntosh A. R., Caron M., Dugas H. A specific spin labeling of the anticodon of E. coli tRNA-Glu. Biochem Biophys Res Commun. 1973 Dec 19;55(4):1356–1363. doi: 10.1016/s0006-291x(73)80043-9. [DOI] [PubMed] [Google Scholar]
  15. OFENGAND E. J., DIECKMANN M., BERG P. The enzymic synthesis of amino acyl derivatives of ribonucleic acid. III. Isolation of amino acid-acceptor ribonucleic acids from Escherichia coli. J Biol Chem. 1961 Jun;236:1741–1747. [PubMed] [Google Scholar]
  16. RUSHIZKY G. W., BARTOS E. M., SOBER H. A. CHROMATOGRAPHY OF MIXED OLIGONUCLEOTIDES ON DEAE-SEPHADEX. Biochemistry. 1964 May;3:626–629. doi: 10.1021/bi00893a005. [DOI] [PubMed] [Google Scholar]
  17. Roberts G. C., Dennis E. A., Meadows D. H., Cohen J. S., Jardetzky O. The mechanism of action of ribonuclease. Proc Natl Acad Sci U S A. 1969 Apr;62(4):1151–1158. doi: 10.1073/pnas.62.4.1151. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Schofield P., Hoffman B. M., Rich A. Spin-labeling studies of aminoacyl transfer ribonucleic acid. Biochemistry. 1970 Jun 9;9(12):2525–2533. doi: 10.1021/bi00814a020. [DOI] [PubMed] [Google Scholar]
  19. Yang C. H., Söll D. Studies of transfer RNA tertiary structure of singlet-singlet energy transfer. Proc Natl Acad Sci U S A. 1974 Jul;71(7):2838–2842. doi: 10.1073/pnas.71.7.2838. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES