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. 1976 Feb;3(2):325–341. doi: 10.1093/nar/3.2.325

The sensitivity of RNA polymerases I and II from Novikoff hepatoma (N1S1) cells to 3'-deoxyadenosine 5'-triphosphate.

R C Desrosiers, F M Rottman, J A Boezi, H C Towle
PMCID: PMC342904  PMID: 176630

Abstract

The synthesis of ribosomal precursor RNA in Novikoff hepatoma (N1S1) cells is very sensitive to cordycepin (3'-dA). The synthesis of hnRNA, however, is resistant to inhibition concentrations of 3'-dA that completely block the synthesis of 45S ribosomal RNA precursor. We have examined the RNA polymerases present in these cultured cells with regard to their sensitivity to cordycepin 5'-triphosphate (3'-dATP) in an effort to explain the differential inhibition of RNA synthesis observed in vivo. RNA polymerases I and II were characterized on the basis of their chromatographic behavior on DEAE-Sephadex, as well as the response of their enzymatic activities to ionic strength, the divalent metal ions Mn2+ and Mg2+, and the toxin alpha-amanitin. For both enzymes the inhibition of in vitro RNA synthesis by 3'-dATP was competitive for ATP. The km values for ATP and the K1 values for 3'-dATP for the two enzymes were quite similar. RNA polymerase II, the enzyme presumed responsible for hnRNA synthesis, was actually slightly more sensitive to 3'-dATP than RNA polymerase I, the enzyme presumed responsible for ribosomal precursor RNA synthesis. Similar data were obtained when the RNA polymerases were assayed in isolated nuclei. These results indicate that the differential inhibition of RNA synthesis caused by 3'-dA in vivo cannot be simply explained by differential sensitivity of RNA polymerases I and II to 3'-dATP.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Abelson H. T., Penman S. Messenger RNA formation: resistance to inhibition by 3'-deoxycytidine. Biochim Biophys Acta. 1972 Aug 16;277(1):129–133. doi: 10.1016/0005-2787(72)90359-0. [DOI] [PubMed] [Google Scholar]
  2. Adesnik M., Salditt M., Thomas W., Darnell J. E. Evidence that all messenger RNA molecules (except histone messenger RNA) contain Poly (A) sequences and that the Poly(A) has a nuclear function. J Mol Biol. 1972 Oct 28;71(1):21–30. doi: 10.1016/0022-2836(72)90397-x. [DOI] [PubMed] [Google Scholar]
  3. Banerjee A. K., Moyer S. A., Rhodes D. P. Studies on the in vitro adenylation of RNA by vesicular stomatitis virus. Virology. 1974 Oct;61(2):547–558. doi: 10.1016/0042-6822(74)90289-x. [DOI] [PubMed] [Google Scholar]
  4. Cashel M., Gallant J. Two compounds implicated in the function of the RC gene of Escherichia coli. Nature. 1969 Mar 1;221(5183):838–841. doi: 10.1038/221838a0. [DOI] [PubMed] [Google Scholar]
  5. Darnell J. E., Philipson L., Wall R., Adesnik M. Polyadenylic acid sequences: role in conversion of nuclear RNA into messenger RNA. Science. 1971 Oct 29;174(4008):507–510. doi: 10.1126/science.174.4008.507. [DOI] [PubMed] [Google Scholar]
  6. Derman E., Darnell J. E. Relationship of chain transcription to poly(A) addition and processing of hnRNA in HeLa cells. Cell. 1974 Nov;3(3):255–264. doi: 10.1016/0092-8674(74)90140-8. [DOI] [PubMed] [Google Scholar]
  7. Desrosiers R., Friderici K., Rottman F. Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells. Proc Natl Acad Sci U S A. 1974 Oct;71(10):3971–3975. doi: 10.1073/pnas.71.10.3971. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Edlin G., Broda P. Physiology and genetics of the "ribonucleic acid control" locus in escherichia coli. Bacteriol Rev. 1968 Sep;32(3):206–226. doi: 10.1128/br.32.3.206-226.1968. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Ehrenfeld E. Polyadenylation of vesicular stomatitis virus mRNA. J Virol. 1974 May;13(5):1055–1060. doi: 10.1128/jvi.13.5.1055-1060.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Etkind P. R., Krug R. M. Influenza viral messenger RNA. Virology. 1974 Nov;62(1):38–45. doi: 10.1016/0042-6822(74)90301-8. [DOI] [PubMed] [Google Scholar]
  11. Franze-Fernández M. T., Pogo A. O. Regulation of the nucleolar DNA-dependent RNA polymerase by amino acids in Ehrlich ascites tumor cells. Proc Natl Acad Sci U S A. 1971 Dec;68(12):3040–3044. doi: 10.1073/pnas.68.12.3040. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Grahn B., Lovtrup-Rein H. The effect of cordycepin on nuclear RNA synthesis in nerve and glial cells. Acta Physiol Scand. 1971 May;82(1):28–34. doi: 10.1111/j.1748-1716.1971.tb04939.x. [DOI] [PubMed] [Google Scholar]
  13. Gross K. J., Pogo A. O. Control mechanism of ribonucleic acid synthesis in eukaryotes. The effect of amino acid and glucose starvation and cycloheximide on yeast deoxyribonucleic acid-dependent ribonucleic acid polymerases. J Biol Chem. 1974 Jan 25;249(2):568–576. [PubMed] [Google Scholar]
  14. Irr J. D., Kaulenas M. S., Unsworth B. R. Synthesis of ppGpp by mouse embryonic ribosomes. Cell. 1974 Nov;3(3):249–253. doi: 10.1016/0092-8674(74)90139-1. [DOI] [PubMed] [Google Scholar]
  15. KREDICH N. M., GUARINO A. J. An improved method of isolation and determination of cordycepin. Biochim Biophys Acta. 1960 Jul 1;41:363–365. doi: 10.1016/0006-3002(60)90027-5. [DOI] [PubMed] [Google Scholar]
  16. Kaplan R., Apirion D. The involvement of ribonuclease I, ribonuclease II, and polynucleotide phosphorylase in the degradation of stable ribonucleic acid during carbon starvation in Escherichia coli. J Biol Chem. 1974 Jan 10;249(1):149–151. [PubMed] [Google Scholar]
  17. Lee L. F., Boezi J. A., Blakesley R. W., Koenig M., Towle H. C. Marek's disease herpesvirus-induced DNA polymerase. J Virol. 1974 Nov;14(5):1209–1219. doi: 10.1128/jvi.14.5.1209-1219.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Mandel J. L., Chambon P. Animal DNA-dependent RNA polymerases. Analysis of the RNAs synthesized on Simian virus 40 superhelical DNA by mammalian RNA polymerases AI and B. Eur J Biochem. 1974 Jan 16;41(2):379–395. doi: 10.1111/j.1432-1033.1974.tb03280.x. [DOI] [PubMed] [Google Scholar]
  19. Penman S., Rosbash M., Penman M. Messenger and heterogeneous nuclear RNA in HeLa cells: differential inhibition by cordycepin. Proc Natl Acad Sci U S A. 1970 Dec;67(4):1878–1885. doi: 10.1073/pnas.67.4.1878. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Penman S., Vesco C., Penman M. Localization and kinetics of formation of nuclear heterodisperse RNA, cytoplasmic heterodisperse RNA and polyribosome-associated messenger RNA in HeLa cells. J Mol Biol. 1968 May 28;34(1):49–60. doi: 10.1016/0022-2836(68)90234-9. [DOI] [PubMed] [Google Scholar]
  21. Perry R. P., Kelley D. E. Persistent synthesis of 5S RNA when production of 28S and 18S ribosomal RNA is inhibited by low doses of actinomycin D. J Cell Physiol. 1968 Dec;72(3):235–246. doi: 10.1002/jcp.1040720311. [DOI] [PubMed] [Google Scholar]
  22. Plagemann P. G. Effects of 3'deoxyadenosine (cordycepin) and 2'deoxyadenosine on nucleoside transport, macromolecular synthesis, and replication of cultured Novikoff hepatoma cells. Arch Biochem Biophys. 1971 May;144(1):401–412. doi: 10.1016/0003-9861(71)90493-0. [DOI] [PubMed] [Google Scholar]
  23. Reeder R. H., Roeder R. G. Ribosomal RNA synthesis in isolated nuclei. J Mol Biol. 1972 Jun 28;67(3):433–441. doi: 10.1016/0022-2836(72)90461-5. [DOI] [PubMed] [Google Scholar]
  24. Roeder R. G., Rutter W. J. Multiple forms of DNA-dependent RNA polymerase in eukaryotic organisms. Nature. 1969 Oct 18;224(5216):234–237. doi: 10.1038/224234a0. [DOI] [PubMed] [Google Scholar]
  25. Roeder R. G., Rutter W. J. Specific nucleolar and nucleoplasmic RNA polymerases. Proc Natl Acad Sci U S A. 1970 Mar;65(3):675–682. doi: 10.1073/pnas.65.3.675. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Sarkar P. K., Goldman B., Moscona A. A. Involvement of poly-A in selective gene expression: suppression of enzyme induction in neural retina by inhibitors of poly-A synthesis. Biochem Biophys Res Commun. 1973 Jan 23;50(2):308–315. doi: 10.1016/0006-291x(73)90841-3. [DOI] [PubMed] [Google Scholar]
  27. Seifart K. H., Juhasz P. P., Benecke B. J. A protein factor from rat-liver tissue enhancing the transcription of native templates by homologous RNA polymerase B. Eur J Biochem. 1973 Feb 15;33(1):181–191. doi: 10.1111/j.1432-1033.1973.tb02668.x. [DOI] [PubMed] [Google Scholar]
  28. Siev M., Weinberg R., Penman S. The selective interruption of nucleolar RNA synthesis in HeLa cells by cordycepin. J Cell Biol. 1969 May;41(2):510–520. doi: 10.1083/jcb.41.2.510. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Singer R. H., Penman S. Messenger RNA in HeLa cells: kinetics of formation and decay. J Mol Biol. 1973 Aug 5;78(2):321–334. doi: 10.1016/0022-2836(73)90119-8. [DOI] [PubMed] [Google Scholar]
  30. Towle H. C., Jolly J. F., Boezi J. A. Purification and characterization of bacteriophage gh-I-induced deoxyribonucleic acid-dependent ribonucleic acid polymerase from Pseudomonas putida. J Biol Chem. 1975 Mar 10;250(5):1723–1733. [PubMed] [Google Scholar]
  31. Weil P. A., Blatti S. P. Partial purification and properties of calf thymus deoxyribonucleic acid dependent RNA polymerase III. Biochemistry. 1975 Apr 22;14(8):1636–1642. doi: 10.1021/bi00679a015. [DOI] [PubMed] [Google Scholar]
  32. Weinmann R., Roeder R. G. Role of DNA-dependent RNA polymerase 3 in the transcription of the tRNA and 5S RNA genes. Proc Natl Acad Sci U S A. 1974 May;71(5):1790–1794. doi: 10.1073/pnas.71.5.1790. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Willis M. V., Baseman J. B., Amos H. Noncoordinate control of RNA synthesis in eucaryotic cells. Cell. 1974 Oct;3(2):179–184. doi: 10.1016/0092-8674(74)90123-8. [DOI] [PubMed] [Google Scholar]
  34. Yoshikawa M., Kato T., Takenishi T. A novel method for phosphorylation of nucleosides to 5'-nucleotides. Tetrahedron Lett. 1967 Dec;50:5065–5068. doi: 10.1016/s0040-4039(01)89915-9. [DOI] [PubMed] [Google Scholar]
  35. Yu F. L., Feigelson P. The rapid turnover of RNA polymerase of rat liver nucleolus, and of its messenger RNA. Proc Natl Acad Sci U S A. 1972 Oct;69(10):2833–2837. doi: 10.1073/pnas.69.10.2833. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Zylber E. A., Penman S. Products of RNA polymerases in HeLa cell nuclei. Proc Natl Acad Sci U S A. 1971 Nov;68(11):2861–2865. doi: 10.1073/pnas.68.11.2861. [DOI] [PMC free article] [PubMed] [Google Scholar]

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