Abstract
The effect of chromatin proteins on template activity has been studied. Using both E. coli RNA polymerase and calf thymmus polymerase B we have measured the number of initiation sites on chromatin and various histone-DNA complexes. Chromatin can be reconstituted with histone proteins alone and this complex is still a restricted template for RNA synthesis. The removal of histone f1 causes a large increase in the template activity. Chromatin is then treated with Micrococcal nuclease and the DNA fragments protected from nuclease attack ("covered DNA") are isolated. Alternatively, the chromatin is titrated with poly-D-lysine, and by successive treatment with Pronase and nuclease, the DNA regions accessible to polylysine are isolated ("open DNA"). Both fractions were tested for template activity. It was found that RNA polymerase initiation sites are distributed equally in open and covered region DNA.
Full text
PDF











Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Axel R., Cedar H., Felsenfeld G. Chromatin template activity and chromatin structure. Cold Spring Harb Symp Quant Biol. 1974;38:773–783. doi: 10.1101/sqb.1974.038.01.082. [DOI] [PubMed] [Google Scholar]
- Axel R., Cedar H., Felsenfeld G. Synthesis of globin ribonucleic acid from duck-reticulocyte chromatin in vitro. Proc Natl Acad Sci U S A. 1973 Jul;70(7):2029–2032. doi: 10.1073/pnas.70.7.2029. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Axel R., Cedar H., Felsenfield G. The structure of the globin genes in chromatin. Biochemistry. 1975 Jun 3;14(11):2489–2495. doi: 10.1021/bi00682a031. [DOI] [PubMed] [Google Scholar]
- Barrett T., Maryanka D., Hamlyn P. H., Gould H. J. Nonhistone proteins control gene expression in reconstituted chromatin. Proc Natl Acad Sci U S A. 1974 Dec;71(12):5057–5061. doi: 10.1073/pnas.71.12.5057. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bloch S., Cedar H. Methylation of chromatin DNA. Nucleic Acids Res. 1976 Jun;3(6):1507–1519. doi: 10.1093/nar/3.6.1507. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bonner J., Dahmus M. E., Fambrough D., Huang R. C., Marushige K., Tuan D. Y. The Biology of Isolated Chromatin: Chromosomes, biologically active in the test tube, provide a powerful tool for the study of gene action. Science. 1968 Jan 5;159(3810):47–56. doi: 10.1126/science.159.3810.47. [DOI] [PubMed] [Google Scholar]
- Cedar H., Felsenfeld G. Transcription of chromatin in vitro. J Mol Biol. 1973 Jun 25;77(2):237–254. doi: 10.1016/0022-2836(73)90334-3. [DOI] [PubMed] [Google Scholar]
- Cedar H. Transcription of DNA and chromatin with calf thymus RNA polymerase B in vitro. J Mol Biol. 1975 Jun 25;95(2):257–269. doi: 10.1016/0022-2836(75)90394-0. [DOI] [PubMed] [Google Scholar]
- Clark R. J., Felsenfeld G. Structure of chromatin. Nat New Biol. 1971 Jan 27;229(4):101–106. doi: 10.1038/newbio229101a0. [DOI] [PubMed] [Google Scholar]
- Gilmour R. S., Paul J. Tissue-specific transcription of the globin gene in isolated chromatin. Proc Natl Acad Sci U S A. 1973 Dec;70(12):3440–3442. doi: 10.1073/pnas.70.12.3440. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hyman R. W., Davidson N. Kinetics of the in vitro inhibition of transcription by actinomycin. J Mol Biol. 1970 Jun 14;50(2):421–438. doi: 10.1016/0022-2836(70)90202-0. [DOI] [PubMed] [Google Scholar]
- Kedinger C., Chambon P. Animal DNA-dependent RNA polymerases. 3. Purification of calf-thymus BI and BII enzymes. Eur J Biochem. 1972 Jul 13;28(2):283–290. doi: 10.1111/j.1432-1033.1972.tb01912.x. [DOI] [PubMed] [Google Scholar]
- Kedinger C., Gissinger F., Gniazdowski M., Mandel J. L., Chambon P. Animal DNA-dependent RNA polymerases. 1. Large-scale solubilization and separation of A and B calf-thymus RNA-polymerase activities. Eur J Biochem. 1972 Jul 13;28(2):269–276. doi: 10.1111/j.1432-1033.1972.tb01910.x. [DOI] [PubMed] [Google Scholar]
- Koslov Y. V., Georgiev G. P. Mechanism of inhibitory action of histones on DNA template activity in vitro. Nature. 1970 Oct 17;228(5268):245–247. doi: 10.1038/228245a0. [DOI] [PubMed] [Google Scholar]
- Panyim S., Bilek D., Chalkley R. An electrophoretic comparison of vertebrate histones. J Biol Chem. 1971 Jul 10;246(13):4206–4215. [PubMed] [Google Scholar]
- Paul J., Gilmour R. S., Affara N., Birnie G., Harrison P., Hell A., Humphries S., Windass J., Young B. The globin gene: structure and expression. Cold Spring Harb Symp Quant Biol. 1974;38:885–890. doi: 10.1101/sqb.1974.038.01.090. [DOI] [PubMed] [Google Scholar]
- Steggles A. W., Wilson G. N., Kantor J. A., Picciano D. J., Falvey A. K., Anderson W. F. Cell-free transcription of mammalian chromatin: transcription of globin messenger RNA sequences from bone-marrow chromatin with mammalian RNA polymerase. Proc Natl Acad Sci U S A. 1974 Apr;71(4):1219–1223. doi: 10.1073/pnas.71.4.1219. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stein G., Park W., Thrall C., Mans R., Stein J. Regulation of cell cycle stage-specific transcription of histone genes from chromatin by non-histone chromosomal proteins. Nature. 1975 Oct 30;257(5529):764–767. doi: 10.1038/257764a0. [DOI] [PubMed] [Google Scholar]
- Zimmerman S. B., Levin C. J. DNA ligase activity in chromatin and its analogs. Rejoining of DNA strands in polylysine-DNA complexes and in reconstituted chromatins. Biochemistry. 1975 Apr 22;14(8):1671–1677. doi: 10.1021/bi00679a019. [DOI] [PubMed] [Google Scholar]
