Abstract
Protein kinase C (PKC) ε, a member of the novel PKC family, plays key roles in mitogenesis and survival in normal and cancer cells. PKCε is frequently overexpressed in epithelial cancers, particularly in lung cancer. Using a shRNA approach, here we established that PKCε is required for non-small cell lung carcinoma (NSCLC) growth in vitro as well as tumor growth when inoculated into athymic mice. Moreover, sustained delivery of a PKCε selective inhibitor peptide, εV1-2, reduced xenograft growth in mice. Both RNAi depletion and pharmacological inhibition of PKCε caused a marked elevation in the number of apoptotic cells in NSCLC tumors. PKCε-depleted NSCLC cells show elevated expression of pro-apoptotic proteins of the Bcl-2 family, caspase recruitment domain (CARD)-containing proteins, and TNF ligands/receptor superfamily members. Moreover, a Gene Set Enrichment Analysis (GSEA) revealed that a vast majority of the genes changed in PKCε-depleted cells were also deregulated in human NSCLC. Our results strongly suggest that PKCε is required for NSCLC cell survival and maintenance of NSCLC tumor growth. Therefore, PKCε may represent an attractive therapeutic target for NSCLC.
Keywords: PKCε, non-small cell lung carcinoma, tumorigenesis, cell survival, apoptotic genes
Introduction
Protein kinase C (PKC) isozymes comprise 3 classes of serine-threonine kinases (“classical” cPKCα, β, γ, “novel” nPKCs δ, ε, η, θ, and “atypical” aPKCζ and ι/λ) that play important roles in the control of cellular growth, survival, differentiation and transformation. Their cooperation with oncogenic stimuli such as Ras, Myc and Fos, is well established (Barr et al., 1991; Han et al., 1995; Hsiao et al., 1989). Despite the extensive knowledge on PKC signaling, there are still major gaps in our understanding of the striking functional specificity displayed by PKC isozymes. Depending on the cellular context, individual members of the DAG/phorbol ester regulated cPKC and nPKC classes modulate cellular responses either in cooperative or antagonistic manners. Studies have shown that PKCα and PKCδ generally inhibit cell cycle progression or promote apoptotic and senescent responses, whereas PKCε mediates mitogenic responses (Black, 2000; Brodie & Blumberg, 2003; Caino et al., 2009; Nakagawa et al., 2005; Oliva et al., 2008; Slupsky et al., 2007). In addition, activation of PKCε inhibits apoptotic responses triggered by a number of stimuli through both Akt-dependent and Akt-independent mechanisms (Basu & Sivaprasad, 2007; Lu et al., 2006; McJilton et al., 2003; Okhrimenko et al., 2005). The diversity and heterogeneity in PKC isozyme function in distinct cell types may largely explain the limited therapeutic success of PKC inhibitors which in most cases fail to discriminate between PKC isozymes.
The expression of PKC isozymes and their effectors is altered in human cancer. One of the most frequent alterations in tumors of epithelial origin is the overexpression of PKCε, particularly in lung, prostate, and breast cancer. PKCε up-regulation in tumors was defined as a prognostic marker for recurrence and patient survival (Gorin & Pan, 2009; Griner & Kazanietz, 2007). Ectopic expression of PKCε in non-transformed epithelial cells leads to either growth advantage or a transformed phenotype (Mischak et al., 1993; Perletti et al., 1996). A recent study revealed that transgenic overexpression of PKCε in the mouse prostate confers a preneoplastic phenotype (Benavides et al., 2011). In the mouse skin, transgenic overexpression of PKCε leads to metastatic squamous carcinoma (Jansen et al., 2001). Thus, despite cell type differences, it became clear that PKCε may have prominent roles in cancer initiation and progression (Gorin & Pan, 2009).
Lung cancer is one of the malignancies in which the role of PKC isozymes is still poorly understood. Studies from our laboratory revealed that PKCα and PKCδ promote anti-mitogenic responses in non-small cell lung carcinoma (NSCLC) cells (Caino et al., 2009; Nakagawa et al., 2005; Oliva et al., 2008). A study by Xiao and coworkers showed that expression of a dominant-negative PKCε mutant inhibits the progression of NSCLC cells through the cell cycle, suggesting that PKCε may have an important role in lung cancer development (Bae et al., 2007). Moreover, PKCε inhibition resulted in a significant amplification of the cytotoxic activity of TRAIL in A549 cells and increased their apoptotic responsiveness (Farber et al., 2004). Notably, more than 90% of human NSCLC tumors display elevated PKCε levels (Bae et al., 2007). Several oncogenic stimuli implicated in lung cancer development, including the epidermal growth factor (EGFR) or K-Ras, signal through the second messenger DAG, a key step for PKCε activation (Parker & Murray-Rust, 2004; Toker, 1998). It is therefore conceivable that PKCε plays a role in the maintenance of the tumorigenic phenotype in lung cancer.
In this study we present strong evidence that PKCε is required for the growth of NSCLC cells in vitro and tumorigenicity in nude mice. Moreover, we identified novel apoptosis-related transcriptional targets for PKCε that correlate with disease status in NSCLC.
Results and discussion
PKCε depletion impairs anchorage-dependent and anchorage-independent NSCLC cell growth
Overexpression of PKCε, a member of the novel PKC family, is a hallmark of human epithelial cancers particularly in NSCLC tumors (Bae et al., 2007; Griner & Kazanietz, 2007). We therefore speculated that this kinase plays a role in the maintenance of the malignant phenotype in NSCLC cells. Analysis of PKCε expression in 4 different human NSCLC cells (H358, A549, H441 and H322) revealed a remarkable overexpression of PKCε relative to immortalized non-tumorigenic (HBEC3) cells (Fig. 1A), which fits with observations in human lung cancer specimens. To establish a role of PKCε in growth and tumorigenesis, we used a RNAi silencing approach. Each of the four NSCLC cell lines was infected with PKCε shRNA lentiviruses or a non-target shRNA lentivirus and stable pools selected with puromycin. Two different sequences (ε#1 and ε#2) were used in all cases to minimize off-target effects. Expression of PKCε was reduced more than 75% by either sequence without any noticeable change in the levels of the other DAG-responsive PKCs present in these cells (PKCα and PKCδ) (Fig. 1B). Cell proliferation was significantly reduced in all four NSCLC cell lines in which PKCε was stably depleted (Fig. 1C). Moreover, assays of colony formation in liquid and semisolid medium revealed that both anchorage-independent and anchorage-dependent growth were impaired in PKCε-depleted H358 cells relative to control cells. Similar results were observed in A549 cells (Fig. 1D and 1E). These data suggest that PKCε may be important in NSCLC growth.
PKCε depletion inhibits NSCLC xenograft growth
In order to assess the effect of PKCε depletion on the tumorigenic potential of NSCLC cells in vivo, we injected s.c. into athymic nude mice H358 cell lines stably expressing either ε#1 shRNA, ε#2 shRNA, or control shRNA. Inoculation of control H358 cells led to the formation of tumors with a latency of ~2 weeks. Notably, tumor growth of PKCε-depleted cells was remarkably lower compared with control NSCLC cells (Fig. 2A). Inhibition of tumor growth was more evident in NSCLC cells expressing shRNA ε#1, which shows near complete depletion of PKCε. Immunohistochemical analysis of xenografts 15 days after inoculation showed a marked induction of cell death in PKCε-depleted cells, as evidenced by a large number of TUNEL positive cells (Fig. 2B).
Pharmacological inhibition of PKCε impairs NSCLC tumor growth
PKC isozymes have been extensively studied as therapeutic targets, and several modulators of PKC activity have been examined in clinical trials for multiple malignancies (Barry & Kazanietz, 2001; Goekjian & Jirousek, 2001; Serova et al., 2006). Surprisingly, despite the established relevance of PKCε in mitogenesis and survival there are no studies to date examining PKCε as a potential therapeutic target for lung cancer. This may be partly due to the lack of kinase inhibitors with selectivity towards PKCε. Indeed, most ATP-binding site directed inhibitors fail to discriminate between PKC isozymes and/or have additional kinases as targets (Bain et al., 2003; Bain et al., 2007; Davies et al., 2000; Mochly-Rosen & Kauvar, 1998). We decided to take advantage of εV1-2, a peptide that specifically inhibits PKCε translocation without affecting the activation of other PKC isozymes (Begley et al., 2004; Felber et al., 2007). This PKCε inhibitor has been successfully delivered as a TAT-fused protein into cellular models as well as into mice and rats (Budas et al., 2007; Gray et al., 1997; Inagaki et al., 2005; Koyanagi et al., 2007).
H358 xenografts were implanted s.c. in athymic mice and when tumors reached approximately 100 mm3 animals were randomized into two groups that received either εV1-2 conjugated to TAT or control TAT (18 mg/kg/day) by osmotic minipumps. Previous studies have found that administration of εV1-2 for 5 weeks at 20 mg/kg/day does not cause cytotoxic or systemic effects to mice (Koyanagi et al., 2007). Osmotic minipumps were replaced every 7 days and tumor growth was followed for 3 weeks. As shown in Fig. 2C, delivery of εV1-2 into nude mice greatly reduced H358 xenograft growth. Immunohistochemical analysis showed a strong induction of cell death (TUNEL positive cells) in tumors from mice that received εV1-2. On the other hand, there were essentially no TUNEL-positive cells in tumors from animals that received the control TAT peptide (Fig. 2D). These results strongly argue for a role for PKCε in NSCLC tumor cell survival.
Identification of PKCε target genes related to survival in NSCLC cells and tumors
In a recent genome wide analysis we established that individual members of the PKC family differentially modulate gene expression. PKCε-regulated gene sets related to cell cycle, K-Ras oncogenesis, and transformation were identified (Caino et al., 2011). Given that PKCε loss-of-function induces cell death in NSCLC xenografts we sought to determine whether PKCε regulates the expression of apoptotic/survival genes. Using a Human Apoptosis array (QIAGEN) we compared the mRNA levels of key apoptosis-related genes in control vs. PKCε-depleted cells. A 1.5-fold cut-off value (PKCε/control) was used. This analysis revealed that PKCε depletion increased mRNA levels of pro-apoptotic proteins Bak1, Bcl2A1, Bcl2L10, Bik and HRK (Table 1). PKCε depletion was associated with a significant decrease in the expression of the pro-survival protein Bcl-2 and the inhibitor of apoptosis cIAP-2 (Fig. 3A and data not shown). In addition, PKCε-depleted cells expressed higher levels of caspase recruitment domain (CARD)-containing proteins (Bag4, CARD8) and caspases (CASP2, CASP3, CASP4 and CASP6) relative to control cells. Several ligands and receptors of the tumor necrosis factor superfamily were also elevated as a consequence of PKCε depletion (Table 1). In order to validate the results from the array, 11 genes were selected. Fig. 3A shows that in all cases the changes observed in the array could be recapitulated using qPCR. Several of these genes were further validated by Western blot (Fig. 3B). These results suggest that PKCε plays an important role in the modulation of genes involved in cell survival and raise the possibility that they contribute to the susceptibility to apoptosis upon PKCε depletion.
Table 1. Expression of PKCε-target genes in human NSCLC cells and specimens.
Gene Symbol | Tumor cells
|
Human samples
|
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---|---|---|---|---|---|---|---|---|---|---|---|
CTRL | PKCε-depleted | p-value | Oncomine p-values | GSEA (Yes/No) | |||||||
mean | S.D. | n | mean | S.D. | n | Single gene | Meta-analysis | ||||
Up-regulated | |||||||||||
BAG3 | 1.01 | 0.09 | 4 | 1.63 | 0.13 | 4 | 0.0035 | * | 0.05 | N/A | No |
BAG4 | 1.00 | 0.04 | 4 | 2.05 | 0.02 | 4 | p<0.0001 | *** | ns | N/A | No |
BAK1 | 1.00 | 0.03 | 4 | 2.33 | 0.52 | 4 | 0.0219 | * | 0.04 | 0.04 | No |
BCL10 | 1.01 | 0.11 | 4 | 3.10 | 0.70 | 4 | 0.013 | * | ns | N/A | No |
BCL2A1 | 1.10 | 0.32 | 4 | 3.59 | 0.01 | 4 | p<0.0001 | *** | 6.23 ×10−5 | 0.02 | No |
BCL2L10 | 1.07 | 0.27 | 4 | 2.99 | 0.86 | 4 | 0.0386 | * | 0.018 | N/A | No |
BCL2L11 | 1.01 | 0.09 | 4 | 1.63 | 0.19 | 4 | 0.0124 | * | ns | N/A | No |
BIK | 1.10 | 0.32 | 4 | 8.76 | 0.24 | 4 | p<0.0001 | *** | ns | N/A | No |
BIRC2 | 1.09 | 0.31 | 4 | 1.53 | 0.07 | 4 | 0.1038 | ns | 1.42 ×10−4 | 3.4 ×10−4 | Yes |
BIRC4 | 1.01 | 0.08 | 4 | 1.56 | 0.04 | 4 | 0.0004 | *** | ns | N/A | No |
BIRC8 | 1.34 | 0.63 | 4 | 5.35 | 2.55 | 4 | 0.0889 | ns | N/A | N/A | No |
BNIP3 | 1.01 | 0.10 | 4 | 2.44 | 0.29 | 4 | 0.0017 | ** | ns | N/A | No |
BNIP3L | 1.02 | 0.16 | 4 | 1.99 | 0.15 | 4 | 0.0022 | ** | 1.58 ×10−5 | 0.004 | Yes |
BRAF | 1.01 | 0.08 | 4 | 3.34 | 0.35 | 4 | 0.0003 | *** | ns | N/A | No |
NOD1 | 1.00 | 0.06 | 4 | 1.53 | 0.19 | 4 | 0.0193 | * | ns | N/A | No |
CASP1 | 1.06 | 0.25 | 4 | 6.47 | 2.82 | 4 | 0.0524 | ns | 1.18 ×10−5 | 1.74 ×10−8 | Yes |
CASP2 | 1.01 | 0.10 | 4 | 1.59 | 0.35 | 4 | 0.0808 | ns | 0.008 | N/A | No |
CASP3 | 1.00 | 0.06 | 4 | 2.80 | 0.21 | 4 | p<0.0001 | *** | ns | N/A | No |
CASP4 | 1.09 | 0.31 | 4 | 7.05 | 1.02 | 4 | 0.0007 | *** | 6.22 ×10−6 | 0.005 | Yes |
CASP5 | 1.00 | 0.03 | 4 | 1.69 | 0.51 | 4 | 0.1136 | ns | 3.13 ×10−4 | 0.015 | No |
CASP6 | 1.02 | 0.15 | 4 | 2.91 | 0.58 | 4 | 0.0095 | ** | ns | N/A | No |
CD40 | 1.22 | 0.50 | 4 | 9.33 | 0.53 | 4 | p<0.0001 | *** | 1.17 ×10−4 | 0.019 | Yes |
CD40LG | 1.00 | 0.00 | 4 | 1.66 | 0.51 | 4 | 0.1238 | ns | 0.011 | N/A | No |
CIDEA | 1.34 | 0.63 | 4 | 3.00 | 0.80 | 4 | 0.0768 | ns | ns | N/A | No |
CIDEB | 1.00 | 0.06 | 4 | 1.56 | 0.09 | 4 | 0.0011 | *** | 0.049 | N/A | No |
DFFA | 1.00 | 0.03 | 4 | 1.58 | 0.01 | 4 | p<0.0001 | *** | 0.031 | N/A | No |
FAS | 1.00 | 0.05 | 4 | 1.63 | 0.05 | 4 | p<0.0001 | *** | 1.05 ×10−7 | 6.32 ×10−4 | Yes |
FASLG | 1.00 | 0.06 | 4 | 4.26 | 0.43 | 4 | 0.0001 | *** | 0.028 | 0.038 | No |
GADD45A | 1.00 | 0.04 | 4 | 3.44 | 0.01 | 4 | p<0.0001 | *** | ns | N/A | No |
HRK | 1.00 | 0.01 | 4 | 2.67 | 0.87 | 4 | 0.0513 | ns | 0.035 | N/A | No |
LTA | 1.18 | 0.44 | 4 | 5.02 | 0.20 | 4 | 0.0001 | *** | 0.006 | N/A | No |
MCL1 | 1.04 | 0.21 | 4 | 2.66 | 0.13 | 4 | 0.0003 | *** | 2.36 ×10−6 | 9.52 ×10−4 | Yes |
NOL3 | 1.07 | 0.27 | 4 | 2.95 | 0.06 | 4 | 0.0002 | *** | ns | N/A | No |
TNF | 1.21 | 0.49 | 4 | 2.23 | 1.17 | 4 | 0.2261 | ns | 9.79 ×10−5 | 0.006 | Yes |
TNFRSF10A | 1.00 | 0.06 | 4 | 1.86 | 0.44 | 4 | 0.0509 | ns | N/A | N/A | No |
TNFRSF21 | 1.00 | 0.06 | 4 | 2.33 | 0.04 | 4 | p<0.0001 | *** | ns | N/A | No |
TNFRSF25 | 1.07 | 0.27 | 4 | 7.22 | 1.96 | 4 | 0.0105 | * | 0.016 | N/A | No |
TNFSF10 | 1.16 | 0.42 | 4 | 4.82 | 1.04 | 4 | 0.0085 | ** | 1.05 ×10−11 | 2.17 ×10−4 | Yes |
TNFSF8 | 1.00 | 0.04 | 4 | 2.42 | 0.36 | 4 | 0.0038 | ** | 0.01 | 0.013 | No |
TP53BP2 | 1.00 | 0.01 | 4 | 1.55 | 0.08 | 4 | 0.0002 | *** | 0.001 | 0.001 | No |
TP73 | 1.01 | 0.10 | 4 | 2.21 | 0.51 | 4 | 0.0296 | * | ns | N/A | No |
TRADD | 1.00 | 0.02 | 4 | 1.65 | 0.02 | 4 | p<0.0001 | *** | 7.26 ×10−5 | N/A | No |
TRAF4 | 1.00 | 0.03 | 4 | 2.60 | 0.57 | 4 | 0.0152 | * | ns | N/A | No |
B2M | 1.02 | 0.15 | 4 | 2.55 | 0.01 | 4 | p<0.0001 | *** | 4.1 ×10−5 | 2.91 ×10−4 | Yes |
Down-regulated | |||||||||||
BCL2 | 1.16 | 0.42 | 4 | 0.09 | 0.04 | 4 | 0.0216 | * | 0.013 | 0.029 | N/A |
BIRC3 | 1.10 | 0.33 | 4 | 0.18 | 0.04 | 4 | 0.0163 | * | 6.57 ×10−4 | 0.017 | N/A |
CARD6 | 1.00 | 0.01 | 4 | 0.60 | 0.16 | 4 | 0.0214 | * | N/A | N/A | N/A |
IGF1R | 1.01 | 0.09 | 4 | 0.64 | 0.04 | 4 | 0.004 | ** | 0.021 | N/A | N/A |
PYCARD | 1.00 | 0.07 | 4 | 0.01 | 0.00 | 4 | p<0.0001 | *** | ns | N/A | N/A |
TNFRSF11B | 1.09 | 0.31 | 4 | 0.53 | 0.20 | 4 | 0.0907 | ns | ns | N/A | N/A |
TNFRSF1A | 1.00 | 0.06 | 4 | 0.69 | 0.22 | 4 | 0.1076 | ns | ns | N/A | N/A |
CD27 | 1.11 | 0.34 | 4 | 0.30 | 0.17 | 4 | 0.0381 | * | 2.83 ×10−4 | 6.39 ×10−4 | N/A |
TNFRS9 | 1.12 | 0.36 | 4 | 0.55 | 0.14 | 4 | 0.0929 | ns | 2.34 ×10−4 | 2.34 ×10−4 | N/A |
CD70 | 1.05 | 0.22 | 4 | 0.10 | 0.02 | 4 | 0.0025 | ** | 0.002 | 0.012 | N/A |
RPL13A | 1.00 | 0.01 | 4 | 0.61 | 0.21 | 4 | 0.0559 | ns | 0.003 | 0.002 | N/A |
To further investigate the relevance of PKCε target genes in NSCLC, we carried out a comprehensive analysis of publicly available human lung cancer datasets. A comparison of PKCε mRNA levels in human lung adenocarcinomas (LAC) vs. normal lung (NL) tissue using the Oncomine repository revealed marked up-regulation in LAC (fold change=2.5, p<0.05, Beer Lung study). Remarkably, the vast majority of the genes with expression altered in PKCε-depleted cells were deregulated in LAC (Table 1 and Tables S1–S2). As expected, pro-apoptotic genes up-regulated in PKCε-depleted cells were down-regulated in LAC, whereas pro-survival genes down-regulated in PKCε-depleted cells were up-regulated in LAC. Furthermore, a meta-analysis from all available studies for each gene revealed that expression changes in LAC vs. NL were statistically significant for 27 of the PKCε-regulated genes (21 genes down-regulated and 6 genes up-regulated in LAC) (Table 1). Based on these results we defined a set for genes regulated negatively by PKCε that passed the threshold of statistical significance p<0.05 that we named “PKCε-gene set”.
In order to gain biological insight from these gene expression studies and determining a potential correlation between the expression of PKCε-regulated genes and disease status, we carried out a Gene Set Enrichment Analysis (GSEA) using as a query the above defined PKCε-gene set. Interestingly, a significant correlation was found between down-regulation of PKCε-regulated genes and LAC samples (p<1 ×10−8 and FDR <0.001). Among the genes negatively correlated with LAC (enrichment score, ES<0) we found FAS, CASP4, CD40, BIRC2, CASP1, TRAIL (TNFSF10), MCL1 and BNIP3L (Table 1, GSEA column). In summary, this analysis identified novel apoptosis-related PKCε transcriptional targets associated with NSCLC, suggesting an important role for PKCε in the inhibition of pro-apoptotic genes.
Final conclusions
Our studies clearly show that overexpression of PKCε is a key driving force in the growth and tumorigenicity of NSCLC cells. PKCε depletion or pharmacological inhibition reduced tumor growth and enhanced tumor cell death, as demonstrated also in cell models in vitro. A key mechanism by which PKCε may sustain tumorigenicity of NSCLC cells is via modulation of the expression of apoptotic genes. A point that illustrates the relevance of our findings is that the majority of the PKCε apoptotic target genes are down-regulated in human NSCLC samples. Moreover, current unpublished studies from our laboratory suggest that PKCε is a key modulator of transcriptional networks of genes that dictate cell fate (M.C.C. and M.G.K., unpublished observations). Conceivably, targeting PKCε may reinstate altered transcriptional patterns displayed by NSCLC cells that contribute to disease development.
One of the outstanding questions raised by this study is the utility of PKCε as a therapeutic target. Our results suggest that PKCε is required for survival of tumor cells and that PKCε depletion of inhibition is sufficient to inhibit tumor growth of lung cancer cells. Three major issues are raised by these results that required ample investigation. The first is the mechanism that leads to PKCε up-regulation in lung cancer (or other epithelial cancers). Preliminary data from our laboratory suggest that deregulation occurs at a transcriptional level and possibly through enhanced protein stability (Wang H.B., Lu H., and M.G.K., unpublished observations). Second, it remains to be determined whether PKCε plays a role in the initiation of lung cancer and whether its overexpression cooperates with other oncogenic alterations characteristic of the disease. Lastly, it would be important to establish whether overexpression of PKCε also involves its hyperactivation. Conceivable, oncogenic alterations that occur in lung cancer lead to enhanced generation of DAG, the physiological PKCε activator. For example, mutant K-Ras is known to elevate cellular DAG levels (Fleischman et al., 1986; Matyas & Fishman, 1989; Preiss et al., 1986). EGFR, which is overexpressed/hyperactivated in 50–90% of human lung tumors (Sekido et al., 2003), couples to phospholipase Cγ, a key enzyme responsible for DAG generation (Paez et al., 2004; Pao et al., 2004; Parker & Murray-Rust, 2004; Rusch et al., 1993; Toker, 1998). Moreover, EGFR signals to PDK-1, a PIP3-dependent kinase required for the maturation of PKCε (Parker & Murray-Rust, 2004; Toker, 1998). Both K-Ras and EGFR are established drivers of survival signals (Lemmon & Schlessinger, 2010; Malumbres & Barbacid, 2003), but the implication of PKCε in these responses remains to be determined. Whether other common oncogenic alterations in lung cancer, such as bFGF and VEGF overexpression, or PI3K, p53 and Pten mutations (Sekido et al., 2003), lead to PKCε activation, needs to be established. Our data therefore warrant the analysis of signals leading to PKCε activation and up-regulation in lung cancer cells. Dissecting these mechanisms may help determining the potential of PKCε as a therapeutic target for different subsets of lung cancers or establish new regimens of combined therapy.
Supplementary Material
References
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