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. 1974 Feb;1(2):309–322. doi: 10.1093/nar/1.2.309

Distribution of repetitious sequences in chick nuclear DNA

H Tapiero 1, MN Monier 1, D Shaool 1, J Harel 1
PMCID: PMC343349  PMID: 4213036

Abstract

By an improved method of hydroxylapatite chromatography, the reassociated sequences of chick nuclear DNA were isolated, and their base composition analysed. By increasing the amount of reassociation, the G + C content of the renatured sequences decreased progressively to reach a mean value corresponding to that of the total DNA. In order to study the distribution of the families, or group of families having different amount of reassociation, DNA was fractionated by CsC1 density gradient centrifugation. Fractions having different G + C content were obtained, and their reassociation rates analysed. At high Cot value of renaturation (Cot=50) the amount of reassociated sequences included in the high or in the low buoyant density DNA fractions was approximately the same, but their G + C content was as expected different. At lower Cot values of renaturation (between Cot of 0.2 and the Cot of 10), the results indicated an heterogeneity of the repeated sequences in the A + T rich DNA fractions, as compared to the G + C rich ones.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bernardi G. Chromatography of nucleic acids on hydroxyapatite. Nature. 1965 May 22;206(4986):779–783. doi: 10.1038/206779a0. [DOI] [PubMed] [Google Scholar]
  2. Corneo G., Ginelli E., Polli E. Repeated sequences in human DNA. J Mol Biol. 1970 Mar 14;48(2):319–327. doi: 10.1016/0022-2836(70)90163-4. [DOI] [PubMed] [Google Scholar]
  3. Crick F. General model for the chromosomes of higher organisms. Nature. 1971 Nov 5;234(5323):25–27. doi: 10.1038/234025a0. [DOI] [PubMed] [Google Scholar]
  4. Fanshier L., Garapin A. C., McDonnell J., Faras A., Levinson W., Bishop J. M. Deoxyribonucleic acid polymerase associated with avian tumor viruses: secondary structure of the deoxyribonucleic acid product. J Virol. 1971 Jan;7(1):77–86. doi: 10.1128/jvi.7.1.77-86.1971. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Flamm W. G., McCallum M., Walker P. M. The isolation of complementary strands from a mouse DNA fraction. Proc Natl Acad Sci U S A. 1967 Jun;57(6):1729–1734. doi: 10.1073/pnas.57.6.1729. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Franze-Fernández M. T., Pogo A. O. Regulation of the nucleolar DNA-dependent RNA polymerase by amino acids in Ehrlich ascites tumor cells. Proc Natl Acad Sci U S A. 1971 Dec;68(12):3040–3044. doi: 10.1073/pnas.68.12.3040. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Gelderman A. H., Rake A. V., Britten R. J. Transcription of nonrepeated DNA in neonatal and fetal mice. Proc Natl Acad Sci U S A. 1971 Jan;68(1):172–176. doi: 10.1073/pnas.68.1.172. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Habener J. F., Bynum B. S., Shack J. Destabilized secondary structure of newly replicated HeLa DNA. J Mol Biol. 1970 Apr 14;49(1):157–170. doi: 10.1016/0022-2836(70)90383-9. [DOI] [PubMed] [Google Scholar]
  9. Maio J. J. DNA strand reassociation and polyribonucleotide binding in the African green monkey, Cercopithecus aethiops. J Mol Biol. 1971 Mar 28;56(3):579–595. doi: 10.1016/0022-2836(71)90403-7. [DOI] [PubMed] [Google Scholar]
  10. SCHILDKRAUT C. L., MARMUR J., DOTY P. Determination of the base composition of deoxyribonucleic acid from its buoyant density in CsCl. J Mol Biol. 1962 Jun;4:430–443. doi: 10.1016/s0022-2836(62)80100-4. [DOI] [PubMed] [Google Scholar]
  11. STUDIER F. W. SEDIMENTATION STUDIES OF THE SIZE AND SHAPE OF DNA. J Mol Biol. 1965 Feb;11:373–390. doi: 10.1016/s0022-2836(65)80064-x. [DOI] [PubMed] [Google Scholar]
  12. Saunders G. F., Shirakawa S., Saunders P. P., Arrighi F. E., Hsu T. C. Populations of repeated DNA sequences in the human genome. J Mol Biol. 1972 Feb 14;63(3):323–334. doi: 10.1016/0022-2836(72)90430-5. [DOI] [PubMed] [Google Scholar]
  13. Sutton W. D. A crude nuclease preparation suitable for use in DNA reassociation experiments. Biochim Biophys Acta. 1971 Jul 29;240(4):522–531. doi: 10.1016/0005-2787(71)90709-x. [DOI] [PubMed] [Google Scholar]
  14. Tapiero H., Caneva R., Schildkraut C. L. Fractions of Chinese hamster DNA differing in their content of guanine+cytosine and evidence for the presence of single-stranded DNA. Biochim Biophys Acta. 1972 Jul 20;272(3):350–360. doi: 10.1016/0005-2787(72)90388-7. [DOI] [PubMed] [Google Scholar]
  15. Walker P. M., McLaren A. Fractionation of mouse deoxyribonucleic acid on hydroxyapatite. Nature. 1965 Dec 18;208(5016):1175–1179. doi: 10.1038/2081175a0. [DOI] [PubMed] [Google Scholar]
  16. Waring M., Britten R. J. Nucleotide sequence repetition: a rapidly reassociating fraction of mouse DNA. Science. 1966 Nov 11;154(3750):791–794. doi: 10.1126/science.154.3750.791. [DOI] [PubMed] [Google Scholar]

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