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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Aug 1;68(Pt 9):m1139. doi: 10.1107/S1600536812033776

Poly[aqua-μ-bromido-(μ2-5-methyl­pyrazine-2-carboxyl­ato-κ4 N 1,O 2:O 2,O 2′)lead(II)]

Pan Yang a, Yan Liu a, Hua Yun Li a, Bin Ding a,*
PMCID: PMC3435569  PMID: 22969442

Abstract

In the title coordination polymer, [PbBr(C6H5N2O2)(H2O)]n, the PbII atom is coordinated by one pyrazine N atom, two bridging Br atoms, a water mol­ecule and three carboxyl­ate O atoms. Bridging by the two anions generates a layer structure parallel to (001); the layers are linked by O—H⋯N and O—H⋯Br hydrogen bonds, forming a three-dimensional network. The lone pair is stereochemically active, resulting in a Ψ-dodeca­hedral coordination environment for PbII.

Related literature  

For background, see: Ding et al. (2009).graphic file with name e-68-m1139-scheme1.jpg

Experimental  

Crystal data  

  • [PbBr(C6H5N2O2)(H2O)]

  • M r = 442.24

  • Monoclinic, Inline graphic

  • a = 7.5493 (10) Å

  • b = 6.6775 (9) Å

  • c = 19.335 (3) Å

  • β = 92.884 (2)°

  • V = 973.5 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 21.41 mm−1

  • T = 296 K

  • 0.15 × 0.14 × 0.13 mm

Data collection  

  • Bruker SMART APEX CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.142, T max = 0.167

  • 5123 measured reflections

  • 1904 independent reflections

  • 1747 reflections with I > 2σ(I)

  • R int = 0.039

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.033

  • wR(F 2) = 0.091

  • S = 1.05

  • 1904 reflections

  • 120 parameters

  • H-atom parameters constrained

  • Δρmax = 2.26 e Å−3

  • Δρmin = −2.20 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 1999); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812033776/ng5284sup1.cif

e-68-m1139-sup1.cif (16.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033776/ng5284Isup2.hkl

e-68-m1139-Isup2.hkl (93.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O3—H3A⋯N2i 0.85 1.97 2.816 (9) 173
O3—H3B⋯Br1ii 0.85 2.56 3.378 (6) 161

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

This present work was supported by the Tianjin Educational Committee (20090504) and Tianjin Normal University (1E0402B).

supplementary crystallographic information

Experimental

Lead(II) bromide (73.4 mg, 0.2 mmol), 5-pyrazine-2-carboxylic acid (27.6 mg, 0.2 mmol) and water (15 ml) were sealed in a 25 ml Teflon-lined steel vessel. The mixture was heated heated to 393 K for 5 days . The autoclave was cooled to room temperature at a rate of 10 K h-1. Yellow block-shaped crystals were obtained in 60% yield based on Pb.

Refinement

H atoms were placed in calculated positions as riding atoms attached to non-riding atoms with O—H es of 0.85 Å and C–H 0.93 to 0.96 Å, and with Uiso(H) = 1.2 to 1.5Ueq(O,C). The final difference Fourier map had a peak in the vicinity of Pb and a hole in the vicinty of the same atom.

Figures

Fig. 1.

Fig. 1.

ORTEP plot of a portion of the polymeric structure drawn at 30% probability displacement ellipsoids. Symmetry codes: i: -x + 1, y - 1/2, -z + 3/2; ii: -x, y - 1/2, -z + 3/2.

Fig. 2.

Fig. 2.

Layer structures.

Fig. 3.

Fig. 3.

Three-dimensional supramolecular structure. Dashed lines represent O—H···N and weak O—H···Br hydrogen bonds.

Fig. 4.

Fig. 4.

Ψ-Dodecahedral geometry of lead(II).

Crystal data

[PbBr(C6H5N2O2)(H2O)] F(000) = 792
Mr = 442.24 Dx = 3.018 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 3510 reflections
a = 7.5493 (10) Å θ = 3.3–28.2°
b = 6.6775 (9) Å µ = 21.41 mm1
c = 19.335 (3) Å T = 296 K
β = 92.884 (2)° Block, colourless
V = 973.5 (2) Å3 0.15 × 0.14 × 0.13 mm
Z = 4

Data collection

Bruker SMART APEX CCD area-detector diffractometer 1904 independent reflections
Radiation source: fine-focus sealed tube 1747 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.039
phi and ω scans θmax = 26.0°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −9→5
Tmin = 0.142, Tmax = 0.167 k = −8→8
5123 measured reflections l = −23→22

Refinement

Refinement on F2 0 restraints
Least-squares matrix: full H-atom parameters constrained
R[F2 > 2σ(F2)] = 0.033 w = 1/[σ2(Fo2) + (0.0596P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.091 (Δ/σ)max = 0.032
S = 1.05 Δρmax = 2.26 e Å3
1904 reflections Δρmin = −2.20 e Å3
120 parameters

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Pb1 0.29327 (3) −0.20899 (3) 0.782606 (12) 0.02328 (17)
Br1 0.00888 (10) 0.08548 (11) 0.80760 (4) 0.0386 (2)
O1 0.5113 (7) 0.0867 (8) 0.7933 (3) 0.0351 (12)
O2 0.4664 (8) −0.0254 (8) 0.8984 (3) 0.0427 (13)
O3 0.2211 (10) −0.5006 (9) 0.8682 (3) 0.067 (2)
H3A 0.2481 −0.4963 0.9114 0.100*
H3B 0.1828 −0.6189 0.8608 0.100*
N1 0.6818 (7) 0.4165 (8) 0.8455 (3) 0.0274 (12)
N2 0.7181 (8) 0.4728 (9) 0.9872 (3) 0.0322 (13)
C1 0.6189 (9) 0.2822 (9) 0.8890 (4) 0.0245 (15)
C2 0.6373 (10) 0.3105 (10) 0.9598 (4) 0.0302 (16)
H2 0.5925 0.2146 0.9891 0.036*
C3 0.7783 (9) 0.6113 (9) 0.9431 (4) 0.0298 (15)
C4 0.7588 (9) 0.5805 (9) 0.8721 (4) 0.0285 (15)
H4 0.8006 0.6771 0.8423 0.034*
C5 0.5250 (9) 0.0994 (10) 0.8587 (4) 0.0280 (15)
C6 0.8627 (14) 0.7958 (11) 0.9749 (6) 0.049 (2)
H6A 0.7859 0.8517 1.0079 0.073*
H6B 0.8818 0.8924 0.9392 0.073*
H6C 0.9743 0.7609 0.9977 0.073*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Pb1 0.0230 (2) 0.0234 (2) 0.0233 (2) −0.00092 (7) 0.00028 (12) 0.00041 (8)
Br1 0.0362 (4) 0.0338 (4) 0.0451 (5) 0.0095 (3) −0.0054 (3) 0.0001 (3)
O1 0.036 (3) 0.042 (3) 0.027 (3) −0.017 (2) −0.005 (2) −0.004 (2)
O2 0.056 (4) 0.038 (3) 0.034 (3) −0.015 (2) −0.002 (2) 0.009 (2)
O3 0.119 (7) 0.049 (4) 0.031 (3) −0.039 (4) −0.019 (3) 0.008 (3)
N1 0.028 (3) 0.026 (3) 0.028 (3) −0.001 (2) −0.001 (2) −0.002 (2)
N2 0.040 (4) 0.030 (3) 0.026 (3) −0.004 (2) −0.001 (2) −0.005 (2)
C1 0.021 (3) 0.026 (4) 0.027 (4) 0.000 (2) −0.002 (3) 0.000 (3)
C2 0.031 (4) 0.031 (4) 0.029 (4) −0.001 (3) 0.003 (3) 0.001 (3)
C3 0.030 (4) 0.024 (3) 0.035 (4) 0.000 (3) −0.003 (3) −0.003 (3)
C4 0.031 (4) 0.023 (3) 0.031 (4) −0.002 (3) 0.001 (3) −0.001 (3)
C5 0.025 (3) 0.030 (3) 0.029 (4) −0.006 (3) 0.003 (3) −0.003 (3)
C6 0.059 (6) 0.033 (5) 0.055 (6) −0.011 (3) 0.004 (5) −0.008 (4)

Geometric parameters (Å, º)

Pb1—O1i 2.531 (5) N1—C1 1.334 (8)
Pb1—O1 2.572 (5) N1—Pb1iv 2.631 (5)
Pb1—N1i 2.631 (6) N2—C2 1.340 (9)
Pb1—O3 2.631 (6) N2—C3 1.353 (9)
Pb1—Br1 2.9688 (8) C1—C2 1.381 (11)
Pb1—Br1ii 3.1190 (9) C1—C5 1.514 (9)
Br1—Pb1iii 3.1190 (9) C2—H2 0.9300
O1—C5 1.268 (8) C3—C4 1.388 (10)
O1—Pb1iv 2.531 (5) C3—C6 1.504 (10)
O2—C5 1.230 (8) C4—H4 0.9300
O3—H3A 0.8501 C6—H6A 0.9600
O3—H3B 0.8510 C6—H6B 0.9600
N1—C4 1.331 (9) C6—H6C 0.9600
O1i—Pb1—O1 94.06 (8) C1—N1—Pb1iv 115.1 (4)
O1i—Pb1—N1i 63.56 (16) C2—N2—C3 117.6 (6)
O1—Pb1—N1i 75.81 (17) N1—C1—C2 120.8 (6)
O1i—Pb1—O3 96.4 (2) N1—C1—C5 118.2 (6)
O1—Pb1—O3 132.06 (18) C2—C1—C5 121.0 (6)
N1i—Pb1—O3 148.79 (18) N2—C2—C1 121.6 (6)
O1i—Pb1—Br1 153.98 (12) N2—C2—H2 119.2
O1—Pb1—Br1 86.76 (12) C1—C2—H2 119.2
N1i—Pb1—Br1 91.65 (12) N2—C3—C4 120.0 (6)
O3—Pb1—Br1 102.33 (18) N2—C3—C6 116.8 (7)
O1i—Pb1—Br1ii 82.54 (13) C4—C3—C6 123.2 (7)
O1—Pb1—Br1ii 146.05 (12) N1—C4—C3 121.8 (6)
N1i—Pb1—Br1ii 72.46 (13) N1—C4—H4 119.1
O3—Pb1—Br1ii 81.80 (15) C3—C4—H4 119.1
Br1—Pb1—Br1ii 82.410 (17) O2—C5—O1 124.3 (6)
Pb1—Br1—Pb1iii 135.64 (3) O2—C5—C1 118.7 (6)
C5—O1—Pb1iv 121.4 (4) O1—C5—C1 117.0 (5)
C5—O1—Pb1 98.7 (4) C3—C6—H6A 109.5
Pb1iv—O1—Pb1 139.2 (2) C3—C6—H6B 109.5
Pb1—O3—H3A 123.1 H6A—C6—H6B 109.5
Pb1—O3—H3B 131.3 C3—C6—H6C 109.5
H3A—O3—H3B 105.1 H6A—C6—H6C 109.5
C4—N1—C1 118.2 (6) H6B—C6—H6C 109.5
C4—N1—Pb1iv 125.1 (4)
O1i—Pb1—Br1—Pb1iii 13.5 (3) Pb1iv—N1—C1—C5 −15.9 (7)
O1—Pb1—Br1—Pb1iii 106.16 (12) C3—N2—C2—C1 1.4 (10)
N1i—Pb1—Br1—Pb1iii 30.47 (13) N1—C1—C2—N2 0.1 (11)
O3—Pb1—Br1—Pb1iii −121.43 (15) C5—C1—C2—N2 −179.1 (6)
Br1ii—Pb1—Br1—Pb1iii −41.59 (4) C2—N2—C3—C4 −1.4 (10)
O1i—Pb1—O1—C5 −126.3 (4) C2—N2—C3—C6 177.8 (7)
N1i—Pb1—O1—C5 172.3 (4) C1—N1—C4—C3 1.6 (10)
O3—Pb1—O1—C5 −23.9 (5) Pb1iv—N1—C4—C3 −163.3 (5)
Br1—Pb1—O1—C5 79.8 (4) N2—C3—C4—N1 −0.1 (10)
Br1ii—Pb1—O1—C5 151.1 (3) C6—C3—C4—N1 −179.3 (7)
O1i—Pb1—O1—Pb1iv 43.5 (3) Pb1iv—O1—C5—O2 −162.2 (6)
N1i—Pb1—O1—Pb1iv −17.9 (3) Pb1—O1—C5—O2 10.0 (8)
O3—Pb1—O1—Pb1iv 145.9 (4) Pb1iv—O1—C5—C1 18.3 (8)
Br1—Pb1—O1—Pb1iv −110.4 (3) Pb1—O1—C5—C1 −169.5 (5)
Br1ii—Pb1—O1—Pb1iv −39.1 (5) N1—C1—C5—O2 −179.9 (6)
C4—N1—C1—C2 −1.5 (9) C2—C1—C5—O2 −0.7 (10)
Pb1iv—N1—C1—C2 164.8 (5) N1—C1—C5—O1 −0.4 (9)
C4—N1—C1—C5 177.7 (6) C2—C1—C5—O1 178.8 (6)

Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) −x, y−1/2, −z+3/2; (iii) −x, y+1/2, −z+3/2; (iv) −x+1, y+1/2, −z+3/2.

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O3—H3A···N2v 0.85 1.97 2.816 (9) 173
O3—H3B···Br1vi 0.85 2.56 3.378 (6) 161

Symmetry codes: (v) −x+1, −y, −z+2; (vi) x, y−1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NG5284).

References

  1. Brandenburg, K. (1999). DIAMOND Crystal Impact GbR, Bonn, Germany.
  2. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Ding, B., Liu, Y. Y., Zhao, X. J., Yang, E. C. & Wang, X. G. (2009). Cryst. Growth Des. 9, 4176–4180.
  4. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812033776/ng5284sup1.cif

e-68-m1139-sup1.cif (16.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033776/ng5284Isup2.hkl

e-68-m1139-Isup2.hkl (93.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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