Abstract
The centrosymmetric molecule of the title compound, [Zn(C16H11N6)2(H2O)2], contains one Zn2+ ion located on a center of symmetry, two 3-[4-(1H-imidazol-1-yl)phenyl]-5-(pyridin-2-yl)-1H-1,2,4-triazol-1-ide (Ippyt) ligands and two coordinating water molecules. The ZnII ion is six-coordinated in a distorted octahedral coordination geometry by four N atoms from two Ippyt ligands and by two O atoms from two water molecules. Adjacent units are interconnected though O—H⋯N hydrogen bonds, forming a three-dimensional network.
Related literature
For similar structures, see: Braga et al. (2005 ▶); Lin et al. (2010 ▶); Faulmann et al. (1990 ▶); Han et al. (2005 ▶); Xue et al. (2009 ▶).
Experimental
Crystal data
[Zn(C16H11N6)2(H2O)2]
M r = 676.04
Monoclinic,
a = 12.6481 (9) Å
b = 11.6659 (6) Å
c = 10.4922 (7) Å
β = 105.891 (7)°
V = 1488.98 (16) Å3
Z = 2
Mo Kα radiation
μ = 0.88 mm−1
T = 293 K
0.03 × 0.03 × 0.02 mm
Data collection
Bruker SMART diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.974, T max = 0.983
4938 measured reflections
2626 independent reflections
1724 reflections with I > 2σ(I)
R int = 0.048
Refinement
R[F 2 > 2σ(F 2)] = 0.049
wR(F 2) = 0.109
S = 1.02
2626 reflections
214 parameters
H-atom parameters constrained
Δρmax = 0.23 e Å−3
Δρmin = −0.29 e Å−3
Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2005 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶).
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812035428/br2206sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035428/br2206Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1⋯N6i | 0.82 | 2.03 | 2.842 (4) | 174 |
| O1—H1B⋯N4ii | 0.85 | 2.07 | 2.868 (4) | 157 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
This work was supported by the Fundamental Research Funds for the Central Universities, P. R. China (No. SWJTU12CX048).
supplementary crystallographic information
Comment
The rational design and syntheses of metal-organic frameworks have been of increasing interest in the crystal engineering of coordination polymers owing to their ability to provide diverse assemblies with fascinating topological structures and material properties ( Han et al., 2005; Xue et al.,2009). The centrosymmetric unit of the title compound contains one Zn2+ion, two Ippyt ligands and two coordination water molecules. For a similar structure, see: Braga et al. (2005); Lin et al. (2010); Faulmann et al. (1990). Every ZnII ion is six-coordinated in a distorted octahedral coordination geometry by four N atoms from two Ippyt ligands and by two O atoms from two coordination water molecules (Fig. 1). There are two kinds of hydrogen bonding interactions which are between the coordinated waters and the triazolyl nitrogen atoms, and between the coordinated waters and the imidazolyl nitrogen atoms, respectively. However, the construct units are connected by the hydrogen bonding interactions between oxygen/ imidazolyl nitrogen atoms and imidazolyl nitrogen/ oxygen atoms from adjacent units respectively. Thus, infinite one-dimensional ring-shaped chains are formed. And then N3 and N3' are further involved in forming another hydrogen bonding interactions with other neighbouring water oxygen atoms and thus connect the 1D supramolecular chains together to form the two-dimensional supramolecular architecture in the a,c plane. And finally the structures are interlinked alternately by different hydrogen bonding interactions and finally result in the three-dimensional supramolecular network architectures.(Fig.2).
Experimental
A mixture of Zn(NO3)2.6H2O (0.02 mmol), Ippyt (0.02 mmol), H2O (8 ml) was sealed in 25ml Teflon-lined stainless steel reactor, which was heated to 413 K for 5d and was subsequently cooled slowly to room temperature. Colourless block-shaped crystals were collected in 47% yield based on Zn.
Refinement
All H atoms were positioned geometrically (C-H = 0.93Åand O-H = 0.82 Å) and allowed to ride on their parent atoms, with Uiso(H) values equal to 1.2Ueq(C) or 1.5Ueq(O).
Figures
Fig. 1.
The coordination environment of ZnII atom in the title compound.
Fig. 2.
The 3D supermolecule network of the title compound. Dashed lines denote hydrogen bonds.
Crystal data
| [Zn(C16H11N6)2(H2O)2] | F(000) = 700 |
| Mr = 676.04 | Dx = 1.512 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 1141 reflections |
| a = 12.6481 (9) Å | θ = 2.4–28.3° |
| b = 11.6659 (6) Å | µ = 0.88 mm−1 |
| c = 10.4922 (7) Å | T = 293 K |
| β = 105.891 (7)° | Block, colourless |
| V = 1488.98 (16) Å3 | 0.03 × 0.03 × 0.02 mm |
| Z = 2 |
Data collection
| Bruker SMART diffractometer | 2626 independent reflections |
| Radiation source: fine-focus sealed tube | 1724 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.048 |
| φ and ω scans | θmax = 25.0°, θmin = 2.4° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −15→8 |
| Tmin = 0.974, Tmax = 0.983 | k = −12→13 |
| 4938 measured reflections | l = −8→12 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.049 | H-atom parameters constrained |
| wR(F2) = 0.109 | w = 1/[σ2(Fo2) + (0.0332P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 1.02 | |
| 2626 reflections | Δρmax = 0.23 e Å−3 |
| 214 parameters | Δρmin = −0.29 e Å−3 |
| Primary atom site location: structure-invariant direct methods |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Zn1 | 0.5000 | 0.0000 | 0.5000 | 0.0451 (2) | |
| N1 | 0.4454 (2) | 0.1728 (2) | 0.4816 (3) | 0.0390 (8) | |
| N2 | 0.6022 (2) | 0.0728 (2) | 0.6718 (3) | 0.0391 (8) | |
| N3 | 0.6852 (2) | 0.0414 (3) | 0.7797 (3) | 0.0441 (8) | |
| N4 | 0.6357 (2) | 0.2248 (2) | 0.8079 (3) | 0.0385 (8) | |
| N5 | 1.0281 (2) | 0.1265 (3) | 1.3567 (3) | 0.0553 (9) | |
| N6 | 1.1782 (3) | 0.0806 (3) | 1.5144 (4) | 0.0726 (12) | |
| O1 | 0.62155 (17) | 0.04131 (19) | 0.3861 (3) | 0.0481 (7) | |
| H1B | 0.6317 | 0.1134 | 0.3870 | 0.058* | |
| H1 | 0.6799 | 0.0087 | 0.4200 | 0.072* | |
| C1 | 0.3757 (3) | 0.2195 (3) | 0.3764 (4) | 0.0469 (10) | |
| H1A | 0.3432 | 0.1729 | 0.3045 | 0.056* | |
| C2 | 0.3496 (3) | 0.3348 (3) | 0.3698 (4) | 0.0516 (11) | |
| H2 | 0.3024 | 0.3661 | 0.2938 | 0.062* | |
| C3 | 0.3952 (3) | 0.4012 (3) | 0.4776 (4) | 0.0545 (11) | |
| H3 | 0.3769 | 0.4784 | 0.4767 | 0.065* | |
| C4 | 0.4682 (3) | 0.3549 (3) | 0.5884 (4) | 0.0474 (10) | |
| H4 | 0.4994 | 0.4000 | 0.6623 | 0.057* | |
| C5 | 0.4938 (2) | 0.2399 (3) | 0.5865 (4) | 0.0344 (8) | |
| C6 | 0.5757 (3) | 0.1811 (3) | 0.6919 (4) | 0.0347 (8) | |
| C7 | 0.7019 (3) | 0.1340 (3) | 0.8583 (4) | 0.0378 (9) | |
| C8 | 0.7859 (3) | 0.1342 (3) | 0.9879 (4) | 0.0393 (9) | |
| C9 | 0.7952 (3) | 0.2227 (3) | 1.0774 (4) | 0.0468 (10) | |
| H9 | 0.7472 | 0.2846 | 1.0566 | 0.056* | |
| C10 | 0.8756 (3) | 0.2204 (3) | 1.1987 (4) | 0.0510 (11) | |
| H10 | 0.8815 | 0.2811 | 1.2578 | 0.061* | |
| C11 | 0.9465 (3) | 0.1283 (3) | 1.2313 (4) | 0.0464 (10) | |
| C12 | 0.9361 (3) | 0.0383 (4) | 1.1451 (5) | 0.0595 (12) | |
| H12 | 0.9823 | −0.0249 | 1.1676 | 0.071* | |
| C13 | 0.8562 (3) | 0.0414 (3) | 1.0237 (4) | 0.0559 (11) | |
| H13 | 0.8500 | −0.0199 | 0.9655 | 0.067* | |
| C14 | 1.0221 (4) | 0.1771 (6) | 1.4698 (5) | 0.113 (2) | |
| H14 | 0.9652 | 0.2232 | 1.4806 | 0.136* | |
| C15 | 1.1136 (4) | 0.1485 (5) | 1.5641 (5) | 0.114 (2) | |
| H15 | 1.1299 | 0.1725 | 1.6519 | 0.137* | |
| C16 | 1.1249 (3) | 0.0693 (4) | 1.3884 (5) | 0.0675 (13) | |
| H16 | 1.1507 | 0.0269 | 1.3280 | 0.081* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Zn1 | 0.0514 (4) | 0.0329 (3) | 0.0373 (4) | 0.0044 (3) | −0.0112 (3) | −0.0042 (4) |
| N1 | 0.0353 (16) | 0.0368 (18) | 0.037 (2) | 0.0012 (14) | −0.0030 (14) | 0.0003 (16) |
| N2 | 0.0400 (17) | 0.0332 (17) | 0.0352 (19) | 0.0010 (13) | −0.0049 (14) | −0.0039 (15) |
| N3 | 0.0469 (18) | 0.0380 (18) | 0.036 (2) | 0.0023 (14) | −0.0069 (15) | −0.0009 (17) |
| N4 | 0.0367 (16) | 0.0354 (17) | 0.0371 (19) | 0.0015 (13) | −0.0005 (14) | −0.0029 (16) |
| N5 | 0.0367 (18) | 0.082 (2) | 0.040 (2) | 0.0157 (17) | −0.0026 (15) | −0.002 (2) |
| N6 | 0.049 (2) | 0.097 (3) | 0.056 (3) | 0.018 (2) | −0.0124 (19) | 0.001 (3) |
| O1 | 0.0452 (14) | 0.0400 (14) | 0.0496 (18) | 0.0068 (11) | −0.0032 (12) | 0.0066 (14) |
| C1 | 0.048 (2) | 0.048 (3) | 0.033 (2) | 0.0015 (18) | −0.0066 (18) | −0.001 (2) |
| C2 | 0.052 (2) | 0.045 (2) | 0.045 (3) | 0.0087 (19) | −0.008 (2) | 0.005 (2) |
| C3 | 0.059 (3) | 0.038 (2) | 0.056 (3) | 0.0133 (19) | −0.002 (2) | 0.000 (2) |
| C4 | 0.052 (2) | 0.037 (2) | 0.043 (3) | 0.0054 (18) | −0.0035 (19) | −0.008 (2) |
| C5 | 0.0328 (19) | 0.034 (2) | 0.033 (2) | 0.0002 (15) | 0.0020 (16) | 0.0004 (19) |
| C6 | 0.038 (2) | 0.033 (2) | 0.032 (2) | −0.0027 (16) | 0.0065 (16) | −0.0031 (18) |
| C7 | 0.035 (2) | 0.040 (2) | 0.034 (2) | −0.0052 (16) | 0.0028 (16) | −0.001 (2) |
| C8 | 0.034 (2) | 0.042 (2) | 0.036 (2) | 0.0027 (16) | 0.0006 (17) | 0.002 (2) |
| C9 | 0.044 (2) | 0.050 (2) | 0.041 (3) | 0.0092 (18) | 0.0016 (18) | −0.003 (2) |
| C10 | 0.047 (2) | 0.060 (3) | 0.039 (2) | 0.008 (2) | −0.0003 (19) | −0.015 (2) |
| C11 | 0.040 (2) | 0.057 (3) | 0.035 (2) | 0.0064 (19) | −0.0021 (17) | 0.001 (2) |
| C12 | 0.053 (3) | 0.057 (3) | 0.055 (3) | 0.020 (2) | −0.007 (2) | −0.003 (3) |
| C13 | 0.056 (2) | 0.050 (2) | 0.051 (3) | 0.009 (2) | −0.003 (2) | −0.010 (2) |
| C14 | 0.078 (4) | 0.202 (7) | 0.045 (3) | 0.071 (4) | −0.008 (3) | −0.024 (4) |
| C15 | 0.074 (4) | 0.209 (7) | 0.041 (3) | 0.057 (4) | −0.015 (3) | −0.018 (4) |
| C16 | 0.054 (3) | 0.075 (3) | 0.059 (3) | 0.017 (2) | −0.009 (2) | −0.005 (3) |
Geometric parameters (Å, º)
| Zn1—N2i | 2.090 (3) | C2—C3 | 1.362 (5) |
| Zn1—N2 | 2.090 (3) | C2—H2 | 0.9300 |
| Zn1—N1 | 2.123 (3) | C3—C4 | 1.381 (5) |
| Zn1—N1i | 2.123 (3) | C3—H3 | 0.9300 |
| Zn1—O1i | 2.243 (2) | C4—C5 | 1.381 (4) |
| Zn1—O1 | 2.243 (2) | C4—H4 | 0.9300 |
| N1—C1 | 1.326 (4) | C5—C6 | 1.463 (5) |
| N1—C5 | 1.353 (4) | C7—C8 | 1.479 (5) |
| N2—C6 | 1.339 (4) | C8—C9 | 1.378 (5) |
| N2—N3 | 1.366 (4) | C8—C13 | 1.385 (5) |
| N3—C7 | 1.340 (4) | C9—C10 | 1.396 (5) |
| N4—C6 | 1.346 (4) | C9—H9 | 0.9300 |
| N4—C7 | 1.365 (4) | C10—C11 | 1.381 (5) |
| N5—C14 | 1.345 (6) | C10—H10 | 0.9300 |
| N5—C16 | 1.353 (5) | C11—C12 | 1.368 (5) |
| N5—C11 | 1.433 (5) | C12—C13 | 1.393 (5) |
| N6—C16 | 1.316 (6) | C12—H12 | 0.9300 |
| N6—C15 | 1.343 (6) | C13—H13 | 0.9300 |
| O1—H1B | 0.8500 | C14—C15 | 1.342 (6) |
| O1—H1 | 0.8199 | C14—H14 | 0.9300 |
| C1—C2 | 1.382 (5) | C15—H15 | 0.9300 |
| C1—H1A | 0.9300 | C16—H16 | 0.9300 |
| N2i—Zn1—N2 | 180.0 | C3—C4—C5 | 118.2 (4) |
| N2i—Zn1—N1 | 101.45 (11) | C3—C4—H4 | 120.9 |
| N2—Zn1—N1 | 78.55 (11) | C5—C4—H4 | 120.9 |
| N2i—Zn1—N1i | 78.55 (11) | N1—C5—C4 | 121.2 (3) |
| N2—Zn1—N1i | 101.45 (11) | N1—C5—C6 | 114.4 (3) |
| N1—Zn1—N1i | 180.0 | C4—C5—C6 | 124.4 (3) |
| N2i—Zn1—O1i | 91.13 (10) | N2—C6—N4 | 113.4 (3) |
| N2—Zn1—O1i | 88.87 (10) | N2—C6—C5 | 118.7 (3) |
| N1—Zn1—O1i | 89.95 (10) | N4—C6—C5 | 127.8 (3) |
| N1i—Zn1—O1i | 90.05 (10) | N3—C7—N4 | 114.3 (3) |
| N2i—Zn1—O1 | 88.87 (10) | N3—C7—C8 | 121.3 (3) |
| N2—Zn1—O1 | 91.13 (10) | N4—C7—C8 | 124.5 (3) |
| N1—Zn1—O1 | 90.05 (10) | C9—C8—C13 | 118.2 (3) |
| N1i—Zn1—O1 | 89.95 (10) | C9—C8—C7 | 122.2 (3) |
| O1i—Zn1—O1 | 180.0 | C13—C8—C7 | 119.6 (4) |
| C1—N1—C5 | 119.3 (3) | C8—C9—C10 | 120.8 (3) |
| C1—N1—Zn1 | 126.3 (3) | C8—C9—H9 | 119.6 |
| C5—N1—Zn1 | 114.3 (2) | C10—C9—H9 | 119.6 |
| C6—N2—N3 | 107.0 (3) | C11—C10—C9 | 120.1 (4) |
| C6—N2—Zn1 | 113.4 (2) | C11—C10—H10 | 119.9 |
| N3—N2—Zn1 | 139.4 (2) | C9—C10—H10 | 119.9 |
| C7—N3—N2 | 104.4 (3) | C12—C11—C10 | 119.7 (4) |
| C6—N4—C7 | 101.0 (3) | C12—C11—N5 | 120.7 (3) |
| C14—N5—C16 | 105.4 (4) | C10—C11—N5 | 119.6 (4) |
| C14—N5—C11 | 127.1 (3) | C11—C12—C13 | 119.9 (4) |
| C16—N5—C11 | 127.4 (4) | C11—C12—H12 | 120.0 |
| C16—N6—C15 | 104.5 (4) | C13—C12—H12 | 120.0 |
| Zn1—O1—H1B | 109.3 | C8—C13—C12 | 121.3 (4) |
| Zn1—O1—H1 | 109.7 | C8—C13—H13 | 119.4 |
| H1B—O1—H1 | 109.8 | C12—C13—H13 | 119.4 |
| N1—C1—C2 | 122.5 (4) | C15—C14—N5 | 107.2 (4) |
| N1—C1—H1A | 118.8 | C15—C14—H14 | 126.4 |
| C2—C1—H1A | 118.8 | N5—C14—H14 | 126.4 |
| C3—C2—C1 | 118.1 (4) | C14—C15—N6 | 110.7 (5) |
| C3—C2—H2 | 121.0 | C14—C15—H15 | 124.6 |
| C1—C2—H2 | 121.0 | N6—C15—H15 | 124.6 |
| C2—C3—C4 | 120.7 (3) | N6—C16—N5 | 112.2 (4) |
| C2—C3—H3 | 119.7 | N6—C16—H16 | 123.9 |
| C4—C3—H3 | 119.7 | N5—C16—H16 | 123.9 |
Symmetry code: (i) −x+1, −y, −z+1.
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1···N6ii | 0.82 | 2.03 | 2.842 (4) | 174 |
| O1—H1B···N4iii | 0.85 | 2.07 | 2.868 (4) | 157 |
Symmetry codes: (ii) −x+2, −y, −z+2; (iii) x, −y+1/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BR2206).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812035428/br2206sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035428/br2206Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


