Abstract
In the title compound, [Cu2(C13H11N4S)2(N3)2], the CuII cation is N,N′,S-chelated by the deprotonated Schiff base ligand and is coordinated by the azide anion, while an N atom from an adjacent azide anion bridges the CuII cation at the apical position with a longer Cu—N distance of 2.533 (3) Å, completing the distorted N4S square-pyramidal coordination geometry. A pair of azide anions bridge the two CuII cations, forming a centrosymmetric binuclear molecule. In the crystal, the binuclear molecules are linked by an N—H⋯N hydrogen bond into a ribbon running along the a axis.
Related literature
For the structure of the parent Schiff base, see: Casas et al. (2003 ▶).
Experimental
Crystal data
[Cu2(C13H11N4S)2(N3)2]
M r = 721.78
Monoclinic,
a = 11.2462 (12) Å
b = 7.2344 (10) Å
c = 18.519 (2) Å
β = 96.653 (5)°
V = 1496.5 (3) Å3
Z = 2
Mo Kα radiation
μ = 1.61 mm−1
T = 295 K
0.35 × 0.30 × 0.25 mm
Data collection
Bruker Kappa APEXII diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.604, T max = 0.690
13614 measured reflections
3747 independent reflections
2973 reflections with I > 2σ(I)
R int = 0.075
Refinement
R[F 2 > 2σ(F 2)] = 0.045
wR(F 2) = 0.134
S = 1.04
3747 reflections
205 parameters
2 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.54 e Å−3
Δρmin = −0.66 e Å−3
Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812035751/xu5611sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035751/xu5611Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N3—H1⋯N2i | 0.87 (1) | 2.22 (1) | 3.075 (3) | 168 (4) |
Symmetry code: (i)
.
Acknowledgments
RJK thanks the University Grants Commission (India) for a Junior Research Fellowship. We thank the Sophisticated Analytical Instruments Facility, Cochin University of S & T, for the diffraction measurements. We also thank the Ministry of Higher Education of Malaysia (grant No. UM.C/HIR/MOHE/SC/12) for supporting this study.
supplementary crystallographic information
Comment
2-Benzoylpyridine thiosemicarbazone (Casas et al., 2003) is a Schiff base that is capable of N,N',S-chelation to metal ions. The CuII atom in [Cu(N3)(C13H11N4S)]2 (Scheme I) is N,N',S-chelated by the deprotonated Schiff base, and it exists in a square pyramidal environment (Fig. 1). Two molecules are disposed about a center-of-inversion and the distance between the copper atom and their apical nitrogen atom of the other azide is 2.533 (3) Å. Adjacent inversion-related pairs of molecules are linked by an N–H···N hydrogen bond to form a ribbon running along the a-axis (Table 1).
Experimental
The Schiff base ligand by heating 2-benzoylpyridine (0.183 g,1 mmol) and thiosemicarbazide (0.091 g,1 mmol) for 3 h. Copper acetate hydrate (0.199 g,1 mmol) and sodium azide (0.065 g,1 mmol) was added and the solution heated for another 2 h. Dark green colored crystals were obtained from the cool solution.
Refinement
Carbon-bound H-atoms were placed in calculated positions (C–H 0.93 Å) and were included in the refinement in the riding model approximation, with U(H) set to 1.2U(C).
The amino H-atoms were located in a difference Fouier and were refined with a distance restraint of N–H 0.88±0.01 Å; their temperature factors tied by a factor of 1.2 times.
Omitted owing interference from the beam stop was (1 0 0).
Figures
Fig. 1.
Thermal ellipsoid plot (Barbour, 2001) of [Cu(N3)(C13H11N4S)]2 at the 570% probability level; hydrogen atoms are drawn as spheres of arbitrary radius.
Crystal data
| [Cu2(C13H11N4S)2(N3)2] | F(000) = 732 |
| Mr = 721.78 | Dx = 1.602 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 4663 reflections |
| a = 11.2462 (12) Å | θ = 3.0–28.3° |
| b = 7.2344 (10) Å | µ = 1.61 mm−1 |
| c = 18.519 (2) Å | T = 295 K |
| β = 96.653 (5)° | Prism, dark green |
| V = 1496.5 (3) Å3 | 0.35 × 0.30 × 0.25 mm |
| Z = 2 |
Data collection
| Bruker Kappa APEXII diffractometer | 3747 independent reflections |
| Radiation source: fine-focus sealed tube | 2973 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.075 |
| ω scans | θmax = 28.4°, θmin = 2.2° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −14→15 |
| Tmin = 0.604, Tmax = 0.690 | k = −9→9 |
| 13614 measured reflections | l = −24→24 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.134 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.04 | w = 1/[σ2(Fo2) + (0.0694P)2 + 0.1161P] where P = (Fo2 + 2Fc2)/3 |
| 3747 reflections | (Δ/σ)max = 0.001 |
| 205 parameters | Δρmax = 0.54 e Å−3 |
| 2 restraints | Δρmin = −0.66 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cu1 | 0.40816 (2) | 0.66511 (5) | 0.521018 (15) | 0.03737 (14) | |
| S1 | 0.31362 (6) | 0.55753 (11) | 0.61376 (3) | 0.0469 (2) | |
| N1 | 0.24572 (17) | 0.7151 (3) | 0.47503 (10) | 0.0345 (4) | |
| N2 | 0.14750 (19) | 0.6402 (3) | 0.50005 (12) | 0.0408 (5) | |
| N3 | 0.0841 (2) | 0.4802 (5) | 0.59265 (14) | 0.0617 (8) | |
| H1 | 0.023 (2) | 0.456 (6) | 0.5610 (15) | 0.074* | |
| H2 | 0.101 (3) | 0.422 (5) | 0.6343 (12) | 0.074* | |
| N4 | 0.44641 (18) | 0.8236 (3) | 0.43679 (11) | 0.0377 (5) | |
| N5 | 0.5749 (2) | 0.6199 (4) | 0.55657 (12) | 0.0468 (6) | |
| N6 | 0.6113 (2) | 0.5803 (4) | 0.61823 (13) | 0.0487 (6) | |
| N7 | 0.6497 (3) | 0.5408 (5) | 0.67545 (14) | 0.0721 (9) | |
| C1 | 0.1174 (2) | 0.8573 (3) | 0.37564 (12) | 0.0340 (5) | |
| C2 | 0.0861 (3) | 0.7823 (4) | 0.30754 (14) | 0.0454 (6) | |
| H2A | 0.1412 | 0.7109 | 0.2861 | 0.054* | |
| C3 | −0.0264 (3) | 0.8127 (5) | 0.27110 (15) | 0.0506 (7) | |
| H3 | −0.0470 | 0.7627 | 0.2251 | 0.061* | |
| C4 | −0.1078 (2) | 0.9171 (5) | 0.30306 (16) | 0.0506 (7) | |
| H4 | −0.1848 | 0.9339 | 0.2796 | 0.061* | |
| C5 | −0.0752 (3) | 0.9963 (5) | 0.36967 (17) | 0.0556 (8) | |
| H5 | −0.1294 | 1.0707 | 0.3906 | 0.067* | |
| C6 | 0.0364 (2) | 0.9669 (4) | 0.40563 (14) | 0.0456 (6) | |
| H6 | 0.0576 | 1.0216 | 0.4507 | 0.055* | |
| C7 | 0.2345 (2) | 0.8130 (3) | 0.41657 (12) | 0.0335 (5) | |
| C8 | 0.1738 (2) | 0.5609 (4) | 0.56389 (13) | 0.0414 (6) | |
| C9 | 0.3482 (2) | 0.8757 (4) | 0.39278 (13) | 0.0349 (5) | |
| C10 | 0.3555 (2) | 0.9761 (4) | 0.33033 (14) | 0.0438 (6) | |
| H10 | 0.2866 | 1.0115 | 0.3010 | 0.053* | |
| C11 | 0.4675 (3) | 1.0232 (5) | 0.31207 (16) | 0.0510 (7) | |
| H11 | 0.4750 | 1.0910 | 0.2702 | 0.061* | |
| C12 | 0.5668 (3) | 0.9688 (5) | 0.35637 (17) | 0.0546 (7) | |
| H12 | 0.6428 | 0.9978 | 0.3446 | 0.065* | |
| C13 | 0.5534 (2) | 0.8708 (4) | 0.41863 (16) | 0.0460 (6) | |
| H13 | 0.6214 | 0.8364 | 0.4490 | 0.055* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cu1 | 0.03127 (19) | 0.0431 (2) | 0.0358 (2) | 0.00031 (11) | −0.00433 (13) | 0.00303 (12) |
| S1 | 0.0438 (4) | 0.0589 (5) | 0.0356 (3) | −0.0033 (3) | −0.0049 (3) | 0.0100 (3) |
| N1 | 0.0312 (9) | 0.0386 (12) | 0.0328 (9) | −0.0013 (8) | −0.0002 (7) | 0.0049 (8) |
| N2 | 0.0332 (10) | 0.0478 (14) | 0.0404 (11) | −0.0046 (9) | −0.0003 (8) | 0.0132 (9) |
| N3 | 0.0541 (15) | 0.079 (2) | 0.0504 (14) | −0.0192 (14) | −0.0032 (11) | 0.0287 (14) |
| N4 | 0.0325 (10) | 0.0390 (13) | 0.0410 (11) | −0.0018 (8) | 0.0018 (8) | −0.0002 (8) |
| N5 | 0.0366 (11) | 0.0595 (16) | 0.0412 (12) | 0.0036 (11) | −0.0092 (9) | 0.0006 (11) |
| N6 | 0.0408 (11) | 0.0518 (16) | 0.0499 (13) | 0.0046 (10) | −0.0099 (10) | −0.0094 (11) |
| N7 | 0.081 (2) | 0.083 (2) | 0.0462 (14) | 0.0153 (16) | −0.0196 (13) | −0.0044 (14) |
| C1 | 0.0341 (11) | 0.0368 (14) | 0.0308 (11) | −0.0008 (9) | 0.0026 (9) | 0.0077 (9) |
| C2 | 0.0456 (14) | 0.0489 (17) | 0.0402 (13) | 0.0035 (12) | −0.0013 (10) | −0.0058 (12) |
| C3 | 0.0508 (16) | 0.061 (2) | 0.0370 (13) | −0.0032 (13) | −0.0064 (11) | 0.0039 (12) |
| C4 | 0.0367 (13) | 0.060 (2) | 0.0527 (15) | 0.0040 (12) | −0.0052 (11) | 0.0219 (14) |
| C5 | 0.0421 (14) | 0.065 (2) | 0.0608 (17) | 0.0200 (14) | 0.0120 (12) | 0.0086 (15) |
| C6 | 0.0455 (14) | 0.0547 (18) | 0.0368 (12) | 0.0050 (12) | 0.0057 (10) | 0.0012 (11) |
| C7 | 0.0319 (11) | 0.0343 (14) | 0.0337 (11) | 0.0022 (9) | 0.0012 (9) | 0.0002 (9) |
| C8 | 0.0409 (13) | 0.0449 (17) | 0.0370 (12) | −0.0025 (11) | −0.0006 (10) | 0.0075 (10) |
| C9 | 0.0348 (11) | 0.0332 (13) | 0.0369 (11) | −0.0001 (10) | 0.0050 (9) | −0.0004 (9) |
| C10 | 0.0446 (14) | 0.0453 (17) | 0.0418 (13) | −0.0020 (11) | 0.0062 (11) | 0.0050 (11) |
| C11 | 0.0551 (17) | 0.0497 (18) | 0.0508 (15) | −0.0051 (13) | 0.0171 (13) | 0.0057 (13) |
| C12 | 0.0425 (14) | 0.055 (2) | 0.0695 (19) | −0.0090 (13) | 0.0208 (13) | −0.0018 (15) |
| C13 | 0.0336 (12) | 0.0482 (17) | 0.0557 (16) | −0.0032 (11) | 0.0034 (11) | −0.0029 (12) |
Geometric parameters (Å, º)
| Cu1—N5 | 1.942 (2) | C2—C3 | 1.381 (4) |
| Cu1—N1 | 1.9578 (19) | C2—H2A | 0.9300 |
| Cu1—N4 | 2.022 (2) | C3—C4 | 1.373 (4) |
| Cu1—S1 | 2.2603 (8) | C3—H3 | 0.9300 |
| Cu1—N5i | 2.533 (3) | C4—C5 | 1.371 (5) |
| S1—C8 | 1.729 (3) | C4—H4 | 0.9300 |
| N1—C7 | 1.287 (3) | C5—C6 | 1.368 (4) |
| N1—N2 | 1.359 (3) | C5—H5 | 0.9300 |
| N2—C8 | 1.316 (3) | C6—H6 | 0.9300 |
| N3—C8 | 1.329 (4) | C7—C9 | 1.472 (3) |
| N3—H1 | 0.872 (10) | C9—C10 | 1.376 (3) |
| N3—H2 | 0.879 (10) | C10—C11 | 1.384 (4) |
| N4—C13 | 1.331 (3) | C10—H10 | 0.9300 |
| N4—C9 | 1.348 (3) | C11—C12 | 1.364 (4) |
| N5—N6 | 1.202 (3) | C11—H11 | 0.9300 |
| N6—N7 | 1.134 (3) | C12—C13 | 1.377 (4) |
| C1—C6 | 1.372 (4) | C12—H12 | 0.9300 |
| C1—C2 | 1.380 (4) | C13—H13 | 0.9300 |
| C1—C7 | 1.477 (3) | ||
| N5—Cu1—N1 | 173.91 (9) | C2—C3—H3 | 120.1 |
| N5—Cu1—N4 | 94.22 (9) | C5—C4—C3 | 119.7 (2) |
| N1—Cu1—N4 | 80.26 (8) | C5—C4—H4 | 120.1 |
| N5—Cu1—S1 | 101.84 (7) | C3—C4—H4 | 120.1 |
| N1—Cu1—S1 | 84.08 (6) | C6—C5—C4 | 120.5 (3) |
| N4—Cu1—S1 | 160.44 (7) | C6—C5—H5 | 119.7 |
| N5—Cu1—N5i | 85.54 (9) | C4—C5—H5 | 119.7 |
| N1—Cu1—N5i | 91.79 (8) | C5—C6—C1 | 120.5 (3) |
| N4—Cu1—N5i | 89.28 (8) | C5—C6—H6 | 119.8 |
| S1—Cu1—N5i | 102.92 (6) | C1—C6—H6 | 119.8 |
| C8—S1—Cu1 | 93.90 (9) | N1—C7—C9 | 114.7 (2) |
| C7—N1—N2 | 120.1 (2) | N1—C7—C1 | 123.1 (2) |
| C7—N1—Cu1 | 117.58 (17) | C9—C7—C1 | 122.3 (2) |
| N2—N1—Cu1 | 122.15 (15) | N2—C8—N3 | 116.7 (2) |
| C8—N2—N1 | 111.9 (2) | N2—C8—S1 | 125.6 (2) |
| C8—N3—H1 | 114 (2) | N3—C8—S1 | 117.71 (19) |
| C8—N3—H2 | 118 (3) | N4—C9—C10 | 122.1 (2) |
| H1—N3—H2 | 124 (4) | N4—C9—C7 | 114.3 (2) |
| C13—N4—C9 | 118.5 (2) | C10—C9—C7 | 123.6 (2) |
| C13—N4—Cu1 | 128.30 (19) | C9—C10—C11 | 118.7 (3) |
| C9—N4—Cu1 | 113.11 (16) | C9—C10—H10 | 120.7 |
| N6—N5—Cu1 | 124.8 (2) | C11—C10—H10 | 120.7 |
| N7—N6—N5 | 177.3 (3) | C12—C11—C10 | 119.1 (3) |
| C6—C1—C2 | 119.1 (2) | C12—C11—H11 | 120.4 |
| C6—C1—C7 | 120.8 (2) | C10—C11—H11 | 120.4 |
| C2—C1—C7 | 120.1 (2) | C11—C12—C13 | 119.4 (3) |
| C1—C2—C3 | 120.4 (3) | C11—C12—H12 | 120.3 |
| C1—C2—H2A | 119.8 | C13—C12—H12 | 120.3 |
| C3—C2—H2A | 119.8 | N4—C13—C12 | 122.2 (3) |
| C4—C3—C2 | 119.8 (3) | N4—C13—H13 | 118.9 |
| C4—C3—H3 | 120.1 | C12—C13—H13 | 118.9 |
| N5—Cu1—S1—C8 | −167.21 (13) | C2—C1—C6—C5 | 2.2 (4) |
| N1—Cu1—S1—C8 | 11.35 (12) | C7—C1—C6—C5 | −175.2 (3) |
| N4—Cu1—S1—C8 | 48.2 (2) | N2—N1—C7—C9 | −176.1 (2) |
| N5i—Cu1—S1—C8 | −79.13 (11) | Cu1—N1—C7—C9 | −0.5 (3) |
| N4—Cu1—N1—C7 | 1.37 (19) | N2—N1—C7—C1 | 3.0 (4) |
| S1—Cu1—N1—C7 | 169.6 (2) | Cu1—N1—C7—C1 | 178.59 (18) |
| N5i—Cu1—N1—C7 | −87.6 (2) | C6—C1—C7—N1 | 65.7 (4) |
| N4—Cu1—N1—N2 | 176.9 (2) | C2—C1—C7—N1 | −111.7 (3) |
| S1—Cu1—N1—N2 | −14.88 (19) | C6—C1—C7—C9 | −115.3 (3) |
| N5i—Cu1—N1—N2 | 87.9 (2) | C2—C1—C7—C9 | 67.3 (3) |
| C7—N1—N2—C8 | −173.5 (2) | N1—N2—C8—N3 | −178.8 (3) |
| Cu1—N1—N2—C8 | 11.1 (3) | N1—N2—C8—S1 | 2.6 (4) |
| N5—Cu1—N4—C13 | −0.4 (2) | Cu1—S1—C8—N2 | −11.5 (3) |
| N1—Cu1—N4—C13 | −177.8 (3) | Cu1—S1—C8—N3 | 170.0 (3) |
| S1—Cu1—N4—C13 | 144.9 (2) | C13—N4—C9—C10 | −0.3 (4) |
| N5i—Cu1—N4—C13 | −85.9 (2) | Cu1—N4—C9—C10 | −176.6 (2) |
| N5—Cu1—N4—C9 | 175.44 (18) | C13—N4—C9—C7 | 178.6 (2) |
| N1—Cu1—N4—C9 | −1.97 (17) | Cu1—N4—C9—C7 | 2.2 (3) |
| S1—Cu1—N4—C9 | −39.2 (3) | N1—C7—C9—N4 | −1.2 (3) |
| N5i—Cu1—N4—C9 | 89.97 (18) | C1—C7—C9—N4 | 179.7 (2) |
| N4—Cu1—N5—N6 | 155.8 (3) | N1—C7—C9—C10 | 177.6 (3) |
| S1—Cu1—N5—N6 | −13.0 (3) | C1—C7—C9—C10 | −1.5 (4) |
| N5i—Cu1—N5—N6 | −115.3 (3) | N4—C9—C10—C11 | 0.6 (4) |
| C6—C1—C2—C3 | −2.0 (4) | C7—C9—C10—C11 | −178.1 (3) |
| C7—C1—C2—C3 | 175.5 (3) | C9—C10—C11—C12 | 0.0 (5) |
| C1—C2—C3—C4 | −0.5 (5) | C10—C11—C12—C13 | −0.9 (5) |
| C2—C3—C4—C5 | 2.6 (5) | C9—N4—C13—C12 | −0.7 (4) |
| C3—C4—C5—C6 | −2.3 (5) | Cu1—N4—C13—C12 | 175.0 (2) |
| C4—C5—C6—C1 | −0.1 (5) | C11—C12—C13—N4 | 1.3 (5) |
Symmetry code: (i) −x+1, −y+1, −z+1.
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H1···N2ii | 0.87 (1) | 2.22 (1) | 3.075 (3) | 168 (4) |
Symmetry code: (ii) −x, −y+1, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5611).
References
- Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
- Bruker (2010). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Casas, J. S., Castellano, E. E., Ellena, J., Tasende, M. S. G., Sánchez, A., Sordo, J. & Vidarte, M. J. (2003). Inorg. Chem. 42, 2584–2595. [DOI] [PubMed]
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812035751/xu5611sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035751/xu5611Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

