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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Aug 23;68(Pt 9):o2739. doi: 10.1107/S1600536812035064

N,N′-(4,5-Dimethyl-1,2-phenyl­ene)bis­(pyridine-2-carboxamide)

Phillipus C W Van der Berg a,*, Hendrik G Visser a, Andreas Roodt a, Theunis J Muller a
PMCID: PMC3435751  PMID: 22969622

Abstract

In the title compound, C20H18N4O2, the dihedral angles between the central benzene ring and the pyridine rings are 57.55 (6) and 22.05 (8)°. The mol­ecular conformation is stabilized by intra­molecular N—H⋯N inter­actions and in the crystal structure an inter­molecular asymmetric cyclic hydrogen-bonding association involving both amide N—H donors and a common amide O-atom acceptor gives a chain extending along the c axis.

Related literature  

For related structures, see: Jain et al. (2004); Lin et al. (2001); Roodt et al. (2011); Schutte et al. (2011); Van der Berg et al. (2011).graphic file with name e-68-o2739-scheme1.jpg

Experimental  

Crystal data  

  • C20H18N4O2

  • M r = 346.38

  • Monoclinic, Inline graphic

  • a = 12.1299 (8) Å

  • b = 18.9418 (8) Å

  • c = 7.7549 (4) Å

  • β = 100.375 (4)°

  • V = 1752.65 (17) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 100 K

  • 0.78 × 0.08 × 0.07 mm

Data collection  

  • Bruker X8 APEXII KappaCCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2004) T min = 0.990, T max = 0.994

  • 15674 measured reflections

  • 3860 independent reflections

  • 3529 reflections with I > 2σ(I)

  • R int = 0.031

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.036

  • wR(F 2) = 0.090

  • S = 1.04

  • 3860 reflections

  • 237 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.26 e Å−3

  • Δρmin = −0.20 e Å−3

Data collection: APEX2 (Bruker, 2010); cell refinement: SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812035064/zs2225sup1.cif

e-68-o2739-sup1.cif (19.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035064/zs2225Isup2.hkl

e-68-o2739-Isup2.hkl (185.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2′⋯N1 0.86 (2) 2.20 (2) 2.6698 (19) 114.2 (16)
N2—H2′⋯N3 0.86 (2) 2.48 (2) 2.777 (2) 101.2 (15)
N2—H2′⋯O2i 0.86 (2) 2.60 (2) 3.2112 (19) 129.0 (17)
N3—H3′⋯O2i 0.86 (2) 2.05 (2) 2.8508 (19) 155.5 (18)
N3—H3′⋯N4 0.86 (2) 2.28 (2) 2.6670 (19) 107.8 (15)

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors would like to thank the Department of Chemistry of the University of the Free State, the NRF, NTeMBI, THRIP and Sasol Ltd for funding.

supplementary crystallographic information

Comment

The title compound C20H18N4O2 was synthesized as a ligand for potential use in medical and radiopharmaceutical applications. In this compound, which has one molecule in the asymmetric unit (Fig. 1), the dihedral angles between the central benzene ring and the pyridine rings are 57.55 (6) and 22.05 (8)°. The molecular conformation is stabilized by intramolecular N—H···N interactions and in the crystal structure an intermolecular asymmetric cyclic hydrogen-bonding association involving both amide N—H donors and a common amide O-atom acceptor (O2i) (Table 1), give a one-dimensional chain extending along c. The related structures from Roodt et al. (2011) and Schutte et al. (2011) also contribute to our studies in radiopharmaceutical design and reactivity.

Experimental

Under oxygen atmosphere, picolinic acid (5.73 g, 0.0465 mol) was added as a solid in one portion to a suspension of 4,5-dimethyl-1,2-phenylenediamine (3.00 g, 0.0220 mol) in pyridine (20 ml) and the mixture was stirred at 40 °C for 40 min. Triphenylphosphite (30 ml) was added dropwise over 10 minutes after which the temperature was increased to 90–100 °C and stirred for a further 24 h. On cooling the precipitate was filtered, washed with H2O (50 ml) and then MeOH (50 ml). The precipitate was recrystallized in chloroform to giving colourless crystals after five days

Refinement

The amides, aromatic and methyl hydrogen atoms were positioned geometrically and allowed to ride on their parent atoms, N—H = 0.86 Å and Uiso(H) = 1.2Ueq, C—H (aromatic C) = 0.95 Å and Uiso(H) = 1.2Ueq and C—H (methyl C) = 0.98 Å and Uiso(H) = 1.5Ueq respectively. The methyl groups were allowed to rotate, giving six half-H sites.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound, showing the atom numbering scheme, with displacement ellipsoids drawn at the 50% probability level.

Crystal data

C20H18N4O2 F(000) = 728
Mr = 346.38 Dx = 1.313 Mg m3
Monoclinic, Cc Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2yc Cell parameters from 5487 reflections
a = 12.1299 (8) Å θ = 3.1–28.3°
b = 18.9418 (8) Å µ = 0.09 mm1
c = 7.7549 (4) Å T = 100 K
β = 100.375 (4)° Needle, colourless
V = 1752.65 (17) Å3 0.78 × 0.08 × 0.07 mm
Z = 4

Data collection

Bruker X8 APEXII KappaCCD diffractometer 3860 independent reflections
Radiation source: sealed tube 3529 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.031
φ and ω scans θmax = 28°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2004) h = −16→16
Tmin = 0.990, Tmax = 0.994 k = −24→24
15674 measured reflections l = −10→10

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090 H atoms treated by a mixture of independent and constrained refinement
S = 1.04 w = 1/[σ2(Fo2) + (0.0456P)2 + 0.7043P] where P = (Fo2 + 2Fc2)/3
3860 reflections (Δ/σ)max = 0.001
237 parameters Δρmax = 0.26 e Å3
2 restraints Δρmin = −0.20 e Å3

Special details

Experimental. The intensity data was collected on a Bruker X8 ApexII 4 K Kappa CCD diffractometer using an exposure time of 30 s/frame. A total of 1895 frames was collected with a frame width of 0.5° covering up to θ = 28.29° with 99.9% completeness accomplished.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
C6 0.77131 (13) 0.70520 (9) 0.3849 (2) 0.0204 (3)
C10 0.34827 (15) 0.64314 (11) 0.4195 (3) 0.0336 (4)
H10A 0.2857 0.6104 0.4193 0.050* 0.5
H10B 0.3246 0.6815 0.3361 0.050* 0.5
H10C 0.3713 0.6629 0.5373 0.050* 0.5
H10D 0.3688 0.6927 0.4424 0.050* 0.5
H10E 0.3298 0.6217 0.5257 0.050* 0.5
H10F 0.2831 0.6403 0.3245 0.050* 0.5
C11 0.33503 (15) 0.48994 (11) 0.3373 (3) 0.0313 (4)
H11A 0.3459 0.4411 0.3025 0.047* 0.5
H11B 0.2703 0.5102 0.2592 0.047* 0.5
H11C 0.3218 0.4908 0.4583 0.047* 0.5
H11D 0.2794 0.5204 0.3775 0.047* 0.5
H11E 0.355 0.4512 0.4208 0.047* 0.5
H11F 0.3035 0.4706 0.2217 0.047* 0.5
C15 0.77150 (13) 0.44582 (8) 0.2917 (2) 0.0202 (2)
N2 0.73461 (11) 0.64533 (7) 0.2985 (2) 0.0221 (3)
N3 0.72056 (11) 0.50299 (7) 0.21172 (19) 0.0190 (3)
O1 0.72183 (10) 0.73844 (7) 0.48200 (17) 0.0277 (3)
O2 0.74071 (9) 0.41395 (6) 0.41242 (15) 0.0202 (2)
H2' 0.7803 (17) 0.6283 (10) 0.237 (3) 0.027 (5)*
H3' 0.7438 (16) 0.5199 (10) 0.122 (3) 0.024 (5)*
C1 1.03548 (14) 0.71236 (10) 0.2222 (2) 0.0283 (4)
H1 1.0731 0.6853 0.1474 0.034*
C2 1.08852 (15) 0.77174 (10) 0.3009 (2) 0.0293 (4)
H2 1.1603 0.7852 0.2795 0.035*
C3 1.03552 (16) 0.81103 (10) 0.4107 (2) 0.0289 (4)
H3 1.07 0.8521 0.4668 0.035*
C4 0.93064 (15) 0.78956 (9) 0.4380 (2) 0.0249 (4)
H4 0.8918 0.8154 0.5134 0.03*
C5 0.88403 (13) 0.72965 (9) 0.3529 (2) 0.0197 (3)
C7 0.63512 (12) 0.60847 (8) 0.3093 (2) 0.0192 (3)
C8 0.54288 (15) 0.64111 (9) 0.3586 (2) 0.0241 (3)
H8 0.5468 0.6899 0.3874 0.029*
C9 0.44549 (13) 0.60415 (9) 0.3667 (2) 0.0243 (4)
C12 0.43827 (14) 0.53253 (9) 0.3249 (2) 0.0235 (3)
C13 0.53017 (14) 0.50011 (9) 0.2728 (2) 0.0215 (3)
H13 0.5258 0.4515 0.2421 0.026*
C14 0.62761 (12) 0.53699 (8) 0.2646 (2) 0.0189 (3)
C16 0.87530 (13) 0.42368 (9) 0.2250 (2) 0.0189 (3)
C17 0.93911 (15) 0.36937 (9) 0.3085 (2) 0.0255 (4)
H17 0.9157 0.344 0.4012 0.031*
C18 1.03894 (15) 0.35268 (10) 0.2530 (3) 0.0295 (4)
H18 1.0859 0.316 0.3079 0.035*
C19 1.06792 (15) 0.39063 (10) 0.1168 (2) 0.0283 (4)
H19 1.1357 0.3806 0.0764 0.034*
C20 0.99767 (15) 0.44332 (10) 0.0395 (3) 0.0301 (4)
H20 1.0181 0.4685 −0.056 0.036*
N1 0.93415 (12) 0.69083 (8) 0.2456 (2) 0.0248 (3)
N4 0.90251 (12) 0.46069 (8) 0.09200 (19) 0.0245 (3)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C6 0.0205 (7) 0.0210 (8) 0.0200 (8) 0.0032 (6) 0.0050 (6) 0.0032 (6)
C10 0.0211 (8) 0.0387 (10) 0.0437 (12) 0.0041 (7) 0.0132 (8) −0.0001 (9)
C11 0.0227 (8) 0.0378 (10) 0.0351 (10) −0.0060 (7) 0.0102 (8) −0.0020 (8)
C15 0.0209 (4) 0.0201 (5) 0.0205 (4) −0.0022 (3) 0.0064 (4) −0.0014 (4)
N2 0.0184 (7) 0.0206 (7) 0.0304 (8) 0.0008 (5) 0.0124 (6) −0.0027 (6)
N3 0.0181 (6) 0.0214 (7) 0.0192 (7) −0.0007 (5) 0.0081 (5) 0.0004 (6)
O1 0.0252 (6) 0.0322 (7) 0.0283 (7) 0.0007 (5) 0.0117 (5) −0.0061 (6)
O2 0.0209 (4) 0.0201 (5) 0.0205 (4) −0.0022 (3) 0.0064 (4) −0.0014 (4)
C1 0.0238 (8) 0.0362 (10) 0.0265 (9) −0.0018 (7) 0.0088 (7) −0.0063 (8)
C2 0.0253 (9) 0.0384 (11) 0.0253 (9) −0.0092 (7) 0.0078 (7) 0.0008 (8)
C3 0.0343 (10) 0.0279 (9) 0.0243 (9) −0.0102 (7) 0.0043 (8) −0.0031 (8)
C4 0.0291 (9) 0.0253 (8) 0.0215 (8) −0.0022 (7) 0.0079 (7) −0.0008 (7)
C5 0.0196 (7) 0.0191 (8) 0.0213 (8) 0.0005 (6) 0.0061 (6) 0.0034 (6)
C7 0.0168 (7) 0.0215 (8) 0.0202 (8) −0.0008 (6) 0.0060 (6) 0.0027 (6)
C8 0.0212 (7) 0.0253 (8) 0.0268 (9) 0.0037 (7) 0.0072 (7) 0.0020 (7)
C9 0.0196 (8) 0.0314 (9) 0.0232 (8) 0.0047 (7) 0.0070 (7) 0.0027 (7)
C12 0.0174 (7) 0.0329 (9) 0.0205 (8) −0.0024 (7) 0.0041 (6) 0.0035 (7)
C13 0.0217 (7) 0.0238 (8) 0.0196 (8) −0.0022 (6) 0.0055 (6) −0.0005 (6)
C14 0.0173 (7) 0.0240 (8) 0.0158 (8) 0.0020 (6) 0.0044 (6) 0.0014 (6)
C16 0.0188 (7) 0.0188 (7) 0.0190 (7) −0.0015 (6) 0.0035 (6) −0.0040 (6)
C17 0.0262 (8) 0.0248 (8) 0.0274 (9) 0.0022 (7) 0.0097 (7) 0.0020 (7)
C18 0.0271 (9) 0.0278 (9) 0.0346 (10) 0.0079 (7) 0.0079 (8) 0.0012 (8)
C19 0.0210 (8) 0.0356 (10) 0.0302 (9) 0.0049 (7) 0.0096 (7) −0.0046 (8)
C20 0.0274 (9) 0.0375 (10) 0.0282 (9) 0.0030 (7) 0.0128 (8) 0.0046 (8)
N1 0.0218 (7) 0.0269 (7) 0.0275 (8) −0.0029 (6) 0.0089 (6) −0.0051 (6)
N4 0.0231 (7) 0.0290 (8) 0.0227 (7) 0.0031 (6) 0.0080 (6) 0.0027 (6)

Geometric parameters (Å, º)

C6—O1 1.219 (2) C1—H1 0.95
C6—N2 1.351 (2) C2—C3 1.375 (3)
C6—C5 1.506 (2) C2—H2 0.95
C10—C9 1.509 (2) C3—C4 1.388 (2)
C10—H10A 0.98 C3—H3 0.95
C10—H10B 0.98 C4—C5 1.381 (2)
C10—H10C 0.98 C4—H4 0.95
C10—H10D 0.98 C5—N1 1.336 (2)
C10—H10E 0.98 C7—C8 1.391 (2)
C10—H10F 0.98 C7—C14 1.397 (2)
C11—C12 1.507 (2) C8—C9 1.384 (2)
C11—H11A 0.98 C8—H8 0.95
C11—H11B 0.98 C9—C12 1.394 (2)
C11—H11C 0.98 C12—C13 1.395 (2)
C11—H11D 0.98 C13—C14 1.384 (2)
C11—H11E 0.98 C13—H13 0.95
C11—H11F 0.98 C16—N4 1.336 (2)
C15—O2 1.2274 (19) C16—C17 1.377 (2)
C15—N3 1.342 (2) C17—C18 1.392 (2)
C15—C16 1.505 (2) C17—H17 0.95
N2—C7 1.410 (2) C18—C19 1.374 (3)
N2—H2' 0.86 (2) C18—H18 0.95
N3—C14 1.421 (2) C19—C20 1.378 (3)
N3—H3' 0.86 (2) C19—H19 0.95
C1—N1 1.338 (2) C20—N4 1.333 (2)
C1—C2 1.382 (3) C20—H20 0.95
O1—C6—N2 125.78 (16) C15—N3—H3' 119.0 (13)
O1—C6—C5 120.35 (15) C14—N3—H3' 117.3 (13)
N2—C6—C5 113.87 (14) N1—C1—C2 123.65 (17)
C9—C10—H10A 109.5 N1—C1—H1 118.2
C9—C10—H10B 109.5 C2—C1—H1 118.2
H10A—C10—H10B 109.5 C3—C2—C1 118.80 (16)
C9—C10—H10C 109.5 C3—C2—H2 120.6
H10A—C10—H10C 109.5 C1—C2—H2 120.6
H10B—C10—H10C 109.5 C2—C3—C4 118.66 (16)
C9—C10—H10D 109.5 C2—C3—H3 120.7
H10A—C10—H10D 141.1 C4—C3—H3 120.7
H10B—C10—H10D 56.3 C5—C4—C3 118.40 (16)
H10C—C10—H10D 56.3 C5—C4—H4 120.8
C9—C10—H10E 109.5 C3—C4—H4 120.8
H10A—C10—H10E 56.3 N1—C5—C4 123.82 (14)
H10B—C10—H10E 141.1 N1—C5—C6 117.49 (14)
H10C—C10—H10E 56.3 C4—C5—C6 118.67 (15)
H10D—C10—H10E 109.5 C8—C7—C14 118.66 (14)
C9—C10—H10F 109.5 C8—C7—N2 122.39 (15)
H10A—C10—H10F 56.3 C14—C7—N2 118.93 (14)
H10B—C10—H10F 56.3 C9—C8—C7 121.53 (15)
H10C—C10—H10F 141.1 C9—C8—H8 119.2
H10D—C10—H10F 109.5 C7—C8—H8 119.2
H10E—C10—H10F 109.5 C8—C9—C12 120.01 (15)
C12—C11—H11A 109.5 C8—C9—C10 118.66 (16)
C12—C11—H11B 109.5 C12—C9—C10 121.33 (16)
H11A—C11—H11B 109.5 C9—C12—C13 118.41 (15)
C12—C11—H11C 109.5 C9—C12—C11 121.62 (16)
H11A—C11—H11C 109.5 C13—C12—C11 119.96 (16)
H11B—C11—H11C 109.5 C14—C13—C12 121.65 (15)
C12—C11—H11D 109.5 C14—C13—H13 119.2
H11A—C11—H11D 141.1 C12—C13—H13 119.2
H11B—C11—H11D 56.3 C13—C14—C7 119.73 (14)
H11C—C11—H11D 56.3 C13—C14—N3 120.85 (14)
C12—C11—H11E 109.5 C7—C14—N3 119.42 (13)
H11A—C11—H11E 56.3 N4—C16—C17 123.97 (15)
H11B—C11—H11E 141.1 N4—C16—C15 117.22 (14)
H11C—C11—H11E 56.3 C17—C16—C15 118.74 (14)
H11D—C11—H11E 109.5 C16—C17—C18 118.08 (16)
C12—C11—H11F 109.5 C16—C17—H17 121
H11A—C11—H11F 56.3 C18—C17—H17 121
H11B—C11—H11F 56.3 C19—C18—C17 118.40 (17)
H11C—C11—H11F 141.1 C19—C18—H18 120.8
H11D—C11—H11F 109.5 C17—C18—H18 120.8
H11E—C11—H11F 109.5 C18—C19—C20 119.32 (16)
O2—C15—N3 124.85 (15) C18—C19—H19 120.3
O2—C15—C16 120.91 (14) C20—C19—H19 120.3
N3—C15—C16 114.22 (14) N4—C20—C19 123.20 (17)
C6—N2—C7 126.56 (14) N4—C20—H20 118.4
C6—N2—H2' 113.8 (13) C19—C20—H20 118.4
C7—N2—H2' 119.5 (13) C5—N1—C1 116.67 (14)
C15—N3—C14 123.74 (14) C20—N4—C16 117.01 (15)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—H2′···N1 0.86 (2) 2.20 (2) 2.6698 (19) 114.2 (16)
N2—H2′···N3 0.86 (2) 2.48 (2) 2.777 (2) 101.2 (15)
N2—H2′···O2i 0.86 (2) 2.60 (2) 3.2112 (19) 129.0 (17)
N3—H3′···O2i 0.86 (2) 2.05 (2) 2.8508 (19) 155.5 (18)
N3—H3′···N4 0.86 (2) 2.28 (2) 2.6670 (19) 107.8 (15)
C8—H8···O1 0.95 2.31 2.877 (2) 118
C2—H2···O1ii 0.95 2.59 3.195 (2) 122
C3—H3···O2iii 0.95 2.48 3.160 (2) 128

Symmetry codes: (i) x, −y+1, z−1/2; (ii) x+1/2, −y+3/2, z−1/2; (iii) x+1/2, y+1/2, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZS2225).

References

  1. Brandenburg, K. & Putz, H. (2005). DIAMOND Crystal Impact GbR, Bonn, Germany.
  2. Bruker (2004). SAINT-Plus and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Bruker (2010). APEX2 Bruker AXS Inc., Madison, Wisconsin, USA.
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  5. Jain, S. L., Bhattacharyya, P., Milton, H. L., Slawin, A. M. Z., Crayston, J. A. & Woollins, J. D. (2004). Dalton Trans. pp. 862–871. [DOI] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812035064/zs2225sup1.cif

e-68-o2739-sup1.cif (19.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035064/zs2225Isup2.hkl

e-68-o2739-Isup2.hkl (185.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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