Abstract
Nearest neighbour analysis of nucleotides in vertebrate DNA has revealed a marked deficiency in the frequency of occurrence of the sequence CpGp. By use of the fingerprinting technique of Sanger et al. (1965) to characterise the nucleotide sequences of HeLa cell hnRNA after T1 RNAase digestion, we have shown that this deficiency also occurs in hnRNA and that it appears to be a general transcript of DNA. This is also true of the hnRNA that contains poly(A). Whilst a deficiency of CpGp occurs also in poly(A) containing mRNA from HeLa cells the deficiency is less marked than in the case of total hnRNA, or poly(A) containing hnRNA. Another difference between mRNA and hnRNA lies in the level of occurrence of the sequence UpApGp. These results are discussed with reference to the possible relationship of hnRNA to mRNA.
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- Bishop J. O., Morton J. G., Rosbash M., Richardson M. Three abundance classes in HeLa cell messenger RNA. Nature. 1974 Jul 19;250(463):199–204. doi: 10.1038/250199a0. [DOI] [PubMed] [Google Scholar]
- Brawerman G., Mendecki J., Lee S. Y. A procedure for the isolation of mammalian messenger ribonucleic acid. Biochemistry. 1972 Feb 15;11(4):637–641. doi: 10.1021/bi00754a027. [DOI] [PubMed] [Google Scholar]
- Bullock E., Elton R. A. Dipeptide frequencies in proteins and the CpG deficiency in vertebrate DNA. J Mol Evol. 1972;1(3):315–325. [PubMed] [Google Scholar]
- Fellner P. Nucleotide sequences from specific areas of the 16S and 23S ribosomal RNAs of E. coli. Eur J Biochem. 1969 Nov;11(1):12–27. doi: 10.1111/j.1432-1033.1969.tb00733.x. [DOI] [PubMed] [Google Scholar]
- Fraser N. W., Maden B. E., Burdon R. H. Nucleotide sequences from HeLa cell HnRNA. FEBS Lett. 1973 Nov 1;36(3):257–260. doi: 10.1016/0014-5793(73)80385-0. [DOI] [PubMed] [Google Scholar]
- Hughes D. G., Maden B. E. Non-random frequencies of short oligonucleotide sequences within poliomyelitis and encephalomyocarditis virus RNAs. Nucleic Acids Res. 1975 Jul;2(7):1213–1222. doi: 10.1093/nar/2.7.1213. [DOI] [PMC free article] [PubMed] [Google Scholar]
- JOSSE J., KAISER A. D., KORNBERG A. Enzymatic synthesis of deoxyribonucleic acid. VIII. Frequencies of nearest neighbor base sequences in deoxyribonucleic acid. J Biol Chem. 1961 Mar;236:864–875. [PubMed] [Google Scholar]
- Klein W. H., Murphy W., Attardi G., Britten R. J., Davidson E. H. Distribution of repetitive and nonrepetivite sequence transcripts in HeLa mRNA. Proc Natl Acad Sci U S A. 1974 May;71(5):1785–1789. doi: 10.1073/pnas.71.5.1785. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lewin B. Units of transcription and translation: sequence components of heterogeneous nuclear RNA and messenger RNA. Cell. 1975 Feb;4(2):77–93. doi: 10.1016/0092-8674(75)90113-0. [DOI] [PubMed] [Google Scholar]
- Lewin B. Units of transcription and translation: the relationship between heterogeneous nuclear RNA and messenger RNA. Cell. 1975 Jan;4(1):11–20. doi: 10.1016/0092-8674(75)90128-2. [DOI] [PubMed] [Google Scholar]
- Maden B. E., Salim M., Summers D. F. Maturation pathway for ribosomal RNA in the Hela cell nucleolus. Nat New Biol. 1972 May 3;237(70):5–9. doi: 10.1038/newbio237005a0. [DOI] [PubMed] [Google Scholar]
- Maden B. E., Salim M. The methylated nucleotide sequences in HELA cell ribosomal RNA and its precursors. J Mol Biol. 1974 Sep 5;88(1):133–152. doi: 10.1016/0022-2836(74)90299-x. [DOI] [PubMed] [Google Scholar]
- Price R. P., Ransom L., Penman S. Identification of a small subfraction of hnRNA with the characteristics of a precursor to mRNA. Cell. 1974 Aug;2(4):253–258. doi: 10.1016/0092-8674(74)90019-1. [DOI] [PubMed] [Google Scholar]
- Robertson J. S., Maden B. E. Nucleotide sequences from the non-conserved region of HeLa cell 32-S ribosomal precursor RNA. Biochim Biophys Acta. 1973 Nov 26;331(1):61–70. doi: 10.1016/0005-2787(73)90419-x. [DOI] [PubMed] [Google Scholar]
- SCHERRER K., DARNELL J. E. Sedimentation characteristics of rapidly labelled RNA from HeLa cells. Biochem Biophys Res Commun. 1962 Jun 4;7:486–490. doi: 10.1016/0006-291x(62)90341-8. [DOI] [PubMed] [Google Scholar]
- SWARTZ M. N., TRAUTNER T. A., KORNBERG A. Enzymatic synthesis of deoxyribonucleic acid. XI. Further studies on nearest neighbor base sequences in deoxyribonucleic acids. J Biol Chem. 1962 Jun;237:1961–1967. [PubMed] [Google Scholar]
- Sanger F., Brownlee G. G., Barrell B. G. A two-dimensional fractionation procedure for radioactive nucleotides. J Mol Biol. 1965 Sep;13(2):373–398. doi: 10.1016/s0022-2836(65)80104-8. [DOI] [PubMed] [Google Scholar]