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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Aug 25;68(Pt 9):o2778. doi: 10.1107/S1600536812034988

(E)-4-Meth­oxy-N′-[(pyridin-4-yl)methyl­idene]benzohydrazide monohydrate

Muhammad Taha a, Humera Naz a,b, Aqilah Abd Rahman a,b, Nor Hadiani Ismail a, Yousuf Sammer c,*
PMCID: PMC3435810  PMID: 22969656

Abstract

In the title compound, C14H13N3O2·H2O, the azomethine double bond adopts an E conformation and the N—N=C—C torsion angle is 178.37 (19)°. The dihedral angle between the benzene and pyridine rings is 5.58 (12)° and the C atom of the meth­oxy group is roughly coplanar with its attached ring [deviation = 0.157 (3) Å]. In the crystal, the components are linked by O—H⋯O, O—H⋯N, N—H⋯O and C—H⋯O hydrogen bonds, forming (001) sheets. The water O atom accepts one N—H⋯O and two C—H⋯O inter­actions from the adjacent organic mol­ecule.

Related literature  

For the biological activity of benzohydraazides, see: Bayrak et al. (2009). For the crystal structures of related benzohydrazides, see: Taha et al. (2012); Fun et al. (2011); Lu et al. (2009); Zhang (2009a ,b ).graphic file with name e-68-o2778-scheme1.jpg

Experimental  

Crystal data  

  • C14H13N3O2·H2O

  • M r = 273.29

  • Monoclinic, Inline graphic

  • a = 6.6878 (5) Å

  • b = 7.0420 (5) Å

  • c = 29.249 (2) Å

  • β = 94.233 (2)°

  • V = 1373.74 (17) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 273 K

  • 0.20 × 0.17 × 0.10 mm

Data collection  

  • Bruker SMART APEX CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2000) T min = 0.981, T max = 0.991

  • 7767 measured reflections

  • 2560 independent reflections

  • 1548 reflections with I > 2σ(I)

  • R int = 0.038

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.047

  • wR(F 2) = 0.146

  • S = 1.03

  • 2560 reflections

  • 182 parameters

  • H-atom parameters constrained

  • Δρmax = 0.16 e Å−3

  • Δρmin = −0.20 e Å−3

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995) and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812034988/hb6930sup1.cif

e-68-o2778-sup1.cif (18.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812034988/hb6930Isup2.hkl

e-68-o2778-Isup2.hkl (125.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812034988/hb6930Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1W—H1⋯O1i 0.84 2.00 2.811 (2) 162
O1W—H2⋯N3ii 0.91 2.11 2.956 (3) 154
N1—H1A⋯O1W 0.86 2.08 2.911 (2) 161
C1—H1B⋯O1W 0.93 2.54 3.440 (3) 162
C8—H8A⋯O1W 0.93 2.48 3.272 (3) 143
C11—H11A⋯O2iii 0.93 2.47 3.375 (3) 165

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

supplementary crystallographic information

Comment

The diverse structural features and wide range of biological activities make Benzohydrazides as an importent class of organic compounds. The title compound is an structure analogue of Benzohydrazide, synthesize as a part of our ongoing research to study their varoius biological activities. The structure of title compound (Fig. 1) is similar to that of our recently published benzohydrazide derivative (E)-N'-(3,4-Dimethoxybenzylidene)-4-methoxybenzohydrazide (Taha et al., 2012, Pv2573) with the difference that 3,4-dimethoxy phenyl ring is replaced by pyridine ring (N3/C9–C13). The azomethine (C=N,1.269 (3) Å) double bond adopt an E conformation (Fig. 1) with the torsion angle of 178.3 (19)° (N1–N2–C8–C9). Phenyl and pyridine rings (C1–C6 and N3/C9–C13) have a dihedral angle of 5.58 (12)° between them and maximum deviation of 0.006 (3) Å for C13 atoms from the root mean square plane. The bond lengths and angle were found to be similar as in structurally realted compounds (Fun et al., 2011, Lu et al., 2009, Zhang et al., 2009). In the crystal structure molecules are consolidated by C11—H11A···O2 intermolecular hydrogen bonds (Fig.2) and extended to form a two-dimensional-network due to O1W—H1···O1 and O1W—H2···N3 (symmetry codes as in Table 2) intermolecular linkages made by water solvates (Fig. 2).

Experimental

A mixture of 2 mmol of 4-methoxybenzohydrazide (0.332 g), 2 mmol isonicotinaldehyde (0.214 g) and catalytical amount of acetic acid was refluxed in methanol (20 ml) for 3 h. The progress of reaction was monitored by TLC. After completion of the reaction, the solvent was evaporated by vacuum to afford the crude product, which was dissolved and recrystallized from methanol to obtain colourless blocks (0.418 g in 82% yield).

Refinement

H atoms on Methyl, phenyl, methine, nitrogen and water were positioned geometrically with C—H = 0.95 Å, CH3 = 0.93 Å, NH = 0.86 Å and O–H = 0.83–0.90 Å and constrained to ride on their parent atoms with Uiso(H)= 1.5Ueq(CH3, OH) and 1.2Ueq(CH, NH). A rotating group model was applied to the methyl group.

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) with displacement ellipsoids drawn at 30% probability level.

Fig. 2.

Fig. 2.

The crystal packing of the title compound I. Only hydrogen atoms involved in hydrogen bonding are shown.

Crystal data

C14H13N3O2·H2O F(000) = 576
Mr = 273.29 Dx = 1.321 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
a = 6.6878 (5) Å Cell parameters from 1112 reflections
b = 7.0420 (5) Å θ = 2.8–22.8°
c = 29.249 (2) Å µ = 0.10 mm1
β = 94.233 (2)° T = 273 K
V = 1373.74 (17) Å3 Block, colourless
Z = 4 0.20 × 0.17 × 0.10 mm

Data collection

Bruker SMART APEX CCD diffractometer 2560 independent reflections
Radiation source: fine-focus sealed tube 1548 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.038
ω scan θmax = 25.5°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2000) h = −8→8
Tmin = 0.981, Tmax = 0.991 k = −7→8
7767 measured reflections l = −35→35

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146 H-atom parameters constrained
S = 1.03 w = 1/[σ2(Fo2) + (0.070P)2] where P = (Fo2 + 2Fc2)/3
2560 reflections (Δ/σ)max < 0.001
182 parameters Δρmax = 0.16 e Å3
0 restraints Δρmin = −0.20 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.0974 (2) 0.3345 (3) 0.05572 (5) 0.0607 (6)
O2 0.6325 (2) 0.1818 (3) −0.10876 (5) 0.0590 (5)
N1 0.3945 (3) 0.3260 (3) 0.09758 (6) 0.0446 (5)
H1A 0.5220 0.3083 0.0985 0.053*
N2 0.3018 (3) 0.3646 (3) 0.13646 (6) 0.0436 (5)
N3 0.1587 (4) 0.5223 (4) 0.29858 (7) 0.0662 (7)
C1 0.5874 (3) 0.2320 (3) 0.01504 (7) 0.0413 (6)
H1B 0.6640 0.2206 0.0428 0.050*
C2 0.6754 (3) 0.1988 (3) −0.02547 (7) 0.0424 (6)
H2A 0.8102 0.1659 −0.0250 0.051*
C3 0.5623 (3) 0.2146 (3) −0.06665 (7) 0.0424 (6)
C4 0.3619 (3) 0.2658 (4) −0.06705 (8) 0.0513 (7)
H4A 0.2858 0.2773 −0.0948 0.062*
C5 0.2756 (3) 0.2993 (3) −0.02691 (8) 0.0462 (6)
H5A 0.1412 0.3340 −0.0277 0.055*
C6 0.3867 (3) 0.2821 (3) 0.01516 (7) 0.0380 (5)
C7 0.2800 (3) 0.3160 (3) 0.05702 (7) 0.0411 (6)
C8 0.4126 (4) 0.3827 (4) 0.17334 (7) 0.0469 (6)
H8A 0.5506 0.3663 0.1732 0.056*
C9 0.3230 (3) 0.4292 (3) 0.21603 (7) 0.0429 (6)
C10 0.4319 (4) 0.4088 (4) 0.25789 (8) 0.0544 (7)
H10A 0.5630 0.3639 0.2592 0.065*
C11 0.3438 (5) 0.4556 (4) 0.29754 (9) 0.0650 (8)
H11A 0.4189 0.4395 0.3253 0.078*
C12 0.0554 (4) 0.5413 (4) 0.25821 (9) 0.0580 (7)
H12A −0.0747 0.5880 0.2580 0.070*
C13 0.1279 (4) 0.4965 (4) 0.21676 (8) 0.0499 (6)
H13A 0.0476 0.5110 0.1896 0.060*
C14 0.8422 (4) 0.1550 (5) −0.11117 (9) 0.0640 (8)
H14A 0.8706 0.1333 −0.1424 0.096*
H14B 0.8852 0.0473 −0.0929 0.096*
H14C 0.9124 0.2663 −0.0998 0.096*
O1W 0.8218 (2) 0.2877 (3) 0.12291 (5) 0.0657 (6)
H1 0.9224 0.2994 0.1078 0.098*
H2 0.8700 0.2103 0.1461 0.098*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0361 (10) 0.1027 (16) 0.0440 (10) 0.0027 (10) 0.0085 (7) 0.0049 (9)
O2 0.0496 (10) 0.0914 (15) 0.0373 (9) −0.0042 (10) 0.0115 (8) −0.0133 (9)
N1 0.0347 (10) 0.0645 (15) 0.0357 (11) 0.0026 (10) 0.0104 (8) 0.0015 (9)
N2 0.0415 (11) 0.0552 (13) 0.0352 (11) 0.0018 (10) 0.0111 (9) 0.0016 (9)
N3 0.0749 (17) 0.0805 (18) 0.0450 (14) −0.0011 (14) 0.0167 (12) −0.0098 (12)
C1 0.0384 (13) 0.0493 (15) 0.0358 (12) 0.0007 (11) 0.0012 (10) 0.0032 (10)
C2 0.0360 (13) 0.0508 (16) 0.0410 (13) 0.0012 (11) 0.0057 (10) −0.0028 (11)
C3 0.0419 (13) 0.0485 (15) 0.0378 (13) −0.0085 (11) 0.0102 (10) −0.0054 (11)
C4 0.0428 (14) 0.075 (2) 0.0359 (14) −0.0049 (13) −0.0009 (10) −0.0017 (12)
C5 0.0340 (13) 0.0624 (18) 0.0424 (14) −0.0034 (12) 0.0034 (10) 0.0007 (12)
C6 0.0378 (12) 0.0403 (14) 0.0366 (12) −0.0053 (11) 0.0068 (9) 0.0025 (10)
C7 0.0370 (13) 0.0488 (16) 0.0379 (13) −0.0027 (11) 0.0057 (10) 0.0049 (11)
C8 0.0394 (13) 0.0605 (17) 0.0416 (14) 0.0046 (12) 0.0084 (11) 0.0005 (12)
C9 0.0454 (14) 0.0469 (16) 0.0370 (13) −0.0016 (12) 0.0074 (10) 0.0001 (11)
C10 0.0537 (15) 0.0636 (19) 0.0456 (15) 0.0042 (14) 0.0016 (11) −0.0006 (13)
C11 0.081 (2) 0.077 (2) 0.0368 (15) 0.0004 (17) 0.0010 (13) −0.0006 (13)
C12 0.0553 (16) 0.0642 (19) 0.0560 (17) −0.0004 (14) 0.0137 (13) −0.0108 (14)
C13 0.0504 (15) 0.0574 (17) 0.0423 (14) 0.0025 (13) 0.0059 (11) −0.0048 (12)
C14 0.0565 (17) 0.087 (2) 0.0516 (16) 0.0062 (16) 0.0226 (13) −0.0059 (14)
O1W 0.0371 (9) 0.1143 (17) 0.0465 (10) 0.0079 (10) 0.0095 (7) 0.0166 (10)

Geometric parameters (Å, º)

O1—C7 1.226 (2) C5—H5A 0.9300
O2—C3 1.370 (3) C6—C7 1.481 (3)
O2—C14 1.422 (3) C8—C9 1.462 (3)
N1—N2 1.362 (2) C8—H8A 0.9300
N1—C7 1.365 (3) C9—C10 1.385 (3)
N1—H1A 0.8600 C9—C13 1.390 (3)
N2—C8 1.269 (3) C10—C11 1.379 (3)
N3—C11 1.326 (3) C10—H10A 0.9300
N3—C12 1.330 (3) C11—H11A 0.9300
C1—C2 1.382 (3) C12—C13 1.375 (3)
C1—C6 1.388 (3) C12—H12A 0.9300
C1—H1B 0.9300 C13—H13A 0.9300
C2—C3 1.379 (3) C14—H14A 0.9600
C2—H2A 0.9300 C14—H14B 0.9600
C3—C4 1.387 (3) C14—H14C 0.9600
C4—C5 1.367 (3) O1W—H1 0.8361
C4—H4A 0.9300 O1W—H2 0.9098
C5—C6 1.395 (3)
C3—O2—C14 118.14 (18) N1—C7—C6 116.9 (2)
N2—N1—C7 118.33 (18) N2—C8—C9 119.9 (2)
N2—N1—H1A 120.8 N2—C8—H8A 120.1
C7—N1—H1A 120.8 C9—C8—H8A 120.1
C8—N2—N1 117.12 (19) C10—C9—C13 117.0 (2)
C11—N3—C12 116.1 (2) C10—C9—C8 120.7 (2)
C2—C1—C6 121.2 (2) C13—C9—C8 122.3 (2)
C2—C1—H1B 119.4 C11—C10—C9 119.3 (2)
C6—C1—H1B 119.4 C11—C10—H10A 120.3
C3—C2—C1 119.6 (2) C9—C10—H10A 120.3
C3—C2—H2A 120.2 N3—C11—C10 124.1 (3)
C1—C2—H2A 120.2 N3—C11—H11A 117.9
O2—C3—C2 124.7 (2) C10—C11—H11A 117.9
O2—C3—C4 115.6 (2) N3—C12—C13 124.5 (3)
C2—C3—C4 119.7 (2) N3—C12—H12A 117.8
C5—C4—C3 120.5 (2) C13—C12—H12A 117.8
C5—C4—H4A 119.8 C12—C13—C9 119.0 (2)
C3—C4—H4A 119.8 C12—C13—H13A 120.5
C4—C5—C6 120.8 (2) C9—C13—H13A 120.5
C4—C5—H5A 119.6 O2—C14—H14A 109.5
C6—C5—H5A 119.6 O2—C14—H14B 109.5
C1—C6—C5 118.2 (2) H14A—C14—H14B 109.5
C1—C6—C7 124.6 (2) O2—C14—H14C 109.5
C5—C6—C7 117.2 (2) H14A—C14—H14C 109.5
O1—C7—N1 121.0 (2) H14B—C14—H14C 109.5
O1—C7—C6 122.1 (2) H1—O1W—H2 101.5
C7—N1—N2—C8 −176.5 (2) C1—C6—C7—O1 −169.8 (2)
C6—C1—C2—C3 −0.3 (3) C5—C6—C7—O1 9.2 (3)
C14—O2—C3—C2 −9.1 (3) C1—C6—C7—N1 10.1 (3)
C14—O2—C3—C4 171.4 (2) C5—C6—C7—N1 −170.9 (2)
C1—C2—C3—O2 −178.8 (2) N1—N2—C8—C9 178.37 (19)
C1—C2—C3—C4 0.7 (4) N2—C8—C9—C10 165.7 (2)
O2—C3—C4—C5 179.1 (2) N2—C8—C9—C13 −14.8 (4)
C2—C3—C4—C5 −0.4 (4) C13—C9—C10—C11 −0.2 (4)
C3—C4—C5—C6 −0.3 (4) C8—C9—C10—C11 179.4 (2)
C2—C1—C6—C5 −0.4 (3) C12—N3—C11—C10 0.8 (4)
C2—C1—C6—C7 178.6 (2) C9—C10—C11—N3 −0.7 (4)
C4—C5—C6—C1 0.7 (4) C11—N3—C12—C13 0.1 (4)
C4—C5—C6—C7 −178.4 (2) N3—C12—C13—C9 −1.0 (4)
N2—N1—C7—O1 −2.6 (3) C10—C9—C13—C12 1.0 (4)
N2—N1—C7—C6 177.42 (18) C8—C9—C13—C12 −178.5 (2)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1W—H1···O1i 0.84 2.00 2.811 (2) 162
O1W—H2···N3ii 0.91 2.11 2.956 (3) 154
N1—H1A···O1W 0.86 2.08 2.911 (2) 161
C1—H1B···O1W 0.93 2.54 3.440 (3) 162
C8—H8A···O1W 0.93 2.48 3.272 (3) 143
C11—H11A···O2iii 0.93 2.47 3.375 (3) 165

Symmetry codes: (i) x+1, y, z; (ii) −x+1, y−1/2, −z+1/2; (iii) x, −y+1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB6930).

References

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  3. Fun, H.-K., Promdet, P., Chantrapromma, S., Horkaew, J. & Karalai, C. (2011). Acta Cryst. E67, o3370–o3371. [DOI] [PMC free article] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812034988/hb6930sup1.cif

e-68-o2778-sup1.cif (18.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812034988/hb6930Isup2.hkl

e-68-o2778-Isup2.hkl (125.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812034988/hb6930Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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