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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Aug 31;68(Pt 9):o2818. doi: 10.1107/S1600536812037002

4-Carbamoylpyridin-1-ium 2,2,2-tri­chloro­acetate–isonicotinamide (1/1)

Franc Perdih a,b,*
PMCID: PMC3435842  PMID: 22969688

Abstract

In the crystal structure of the title 1:1 co-crystal, C6H7N2O+·C2Cl3O2 ·C6H6N2O, the amide groups of the 4-carbamoylpyridin-1-ium ion and the isonicotinamide mol­ecule are twisted out of the plane of the aromatic ring with C—C—C—N torsion angles of 21.5 (4) and −33.5 (4)°, respectively. The 4-carbamoylpyridin-1-ium and isonicotinamide amide groups form R 2 2(8) hydrogen-bonded dimers via N—H⋯O=C inter­actions. The two remaining amide H atoms (i) link dimers via the cation to an isonicotinamide and (ii) from the isonicotinamide to a trichloro­acetate anion. The pyridinium H atom also forms an N—H⋯O hydrogen bond with the trichloro­acetate anion. Due to the extended hydrogen bonding, including C—H⋯O and C—H⋯Cl interactions, all components in the structure aggregate into a three-dimensional supra­molecular framework.

Related literature  

For applications of co-crystals, see: Karki et al. (2009); Friščić & Jones (2010). For related structures, see: Madeley et al. (2011).graphic file with name e-68-o2818-scheme1.jpg

Experimental  

Crystal data  

  • C6H7N2O+·C2Cl3O2 ·C6H6N2O

  • M r = 407.63

  • Orthorhombic, Inline graphic

  • a = 13.7910 (3) Å

  • b = 22.6680 (5) Å

  • c = 5.6340 (1) Å

  • V = 1761.27 (6) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.55 mm−1

  • T = 293 K

  • 0.4 × 0.1 × 0.1 mm

Data collection  

  • Agilent SuperNova, Dual, Cu at zero, Atlas diffractometer

  • Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) T min = 0.811, T max = 0.947

  • 16297 measured reflections

  • 4017 independent reflections

  • 3575 reflections with I > 2σ(I)

  • R int = 0.031

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.04

  • wR(F 2) = 0.091

  • S = 1.04

  • 4017 reflections

  • 241 parameters

  • 1 restraint

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.41 e Å−3

  • Δρmin = −0.57 e Å−3

  • Absolute structure: Flack (1983), 1791 Friedel pairs

  • Flack parameter: 0.01 (6)

Data collection: CrysAlis PRO (Agilent, 2011); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and DIAMOND (Brandenburg, 1999); software used to prepare material for publication: WinGX (Farrugia, 1999) and publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812037002/gg2095sup1.cif

e-68-o2818-sup1.cif (24.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812037002/gg2095Isup2.hkl

e-68-o2818-Isup2.hkl (192.9KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812037002/gg2095Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H15⋯O2i 0.90 (3) 1.78 (3) 2.679 (3) 175 (3)
N2—H16A⋯N3ii 0.87 (3) 2.11 (3) 2.958 (3) 164 (3)
N2—H16B⋯O3 0.90 (4) 1.99 (4) 2.887 (3) 178 (3)
N4—H17A⋯O4 0.91 (4) 2.08 (4) 2.972 (3) 167 (4)
N4—H17B⋯O1 0.89 (4) 1.98 (4) 2.839 (3) 160 (3)
C1—H1⋯O1i 0.93 2.58 3.211 (3) 126
C2—H2⋯O4iii 0.93 2.55 3.358 (3) 146
C7—H7⋯O3iv 0.93 2.58 3.489 (3) 166
C11—H11⋯Cl2v 0.93 2.82 3.711 (3) 162

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic.

Acknowledgments

The author thanks the Ministry of Education, Science, Culture and Sport of the Republic of Slovenia and the Slovenian Research Agency for financial support through grants P1–0230–0175 as well as the EN–FIST Centre of Excellence, Dunajska 156, 1000 Ljubljana, Slovenia for use of the Supernova diffractometer.

supplementary crystallographic information

Comment

Co-crystals have attracted much attention in recent years owing to their contributions to crystal engineering and pharmaceutical chemistry. They were found to be useful in improving the stability, solubility, dissolution rate and mechanical properties (Karki et al., 2009; Friščić & Jones, 2010). Here we present the structure obtained by reacting isonicotinamide and trichloroacetic acid in 2:1 molar ratio.

The asymmetric unit of (I) consists of one 4-carbamoylpyridin-1-ium cation, one trichloroacetate anion and one isonicotinamide molecule (Fig. 1). The amide groups of 4-carbamoylpyridin-1-ium ion and isonicotinamide molecule are twisted out of the plane of the aromatic ring with a C—C—C—N torsion angle of 21.5 (4)° and -33.5 (4)°, respectively. Similar twisting was observed for example in isonicotinamide–2-naphthoic acid (1/1) (Madeley et al., 2011). Aromatic rings of 4-carbamoylpyridin-1-ium ion and isonicotinamide molecule are not coplanar, but are inclined by 35.05 (12)°. In the crystal, all the components of the structure are associated via the extended system of hydrogen bonds (N—H···O and N—H···N) and weak C—H···O and C—H···Cl interactions into extended three-dimensional supramolecular framework (Figs. 2, 3). The 4-carbamoylpyridin-1-ium ion is hydrogen bonded via N—H···O hydrogen bonding of the pyridinium unit to the trichloroacetate ion. The amide groups from 4-carbamoylpyridin-1-ium and isonicotinamide form a dimer via N—H···O hydrogen bonding, that is a typical supramolecular hydrogen-bonded synthon observed for amide-amide homodimers. Furthermore, the amide group of the cation is hydrogen bonded to the pyridine unit of isonicotinamide and the amide group of the isonicotinamide is hydrogen bonded to the trichloroacetate ion.

Experimental

Crystals of the title compound were obtained by slow evaporation of a 2:1 mol. mixture of isonicotinamide and trichloroacetic acid in methanol at room temperature.

Refinement

All H atoms were initially located in a difference Fourier maps. H atoms attached to N atoms were refined isotropically with Uiso(H) = 1.5Ueq(N). Other H atoms were treated as riding atoms in geometrically idealized positions, with C—H = 0.93 Å, and with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The asymmetric unit of the title compound with displacement ellipsoids drawn at the 50% probability level.

Fig. 2.

Fig. 2.

Hydrogen bonding diagram. Dashed lines indicate intermolecular N—H···O, N—H···N, C—H···O and C—H···Cl hydrogen bonding. For the sake of clarity, H atoms not involved in the motif shown have been omitted. Symmetry codes: i –x, –y + 1, z + 3/2; iix – 1/2, –y + 3/2, z + 1; ivx + 1/2, –y + 3/2, z; vx – 1/2, –y + 3/2, z – 1.

Fig. 3.

Fig. 3.

Crystal packing of the title compound. For the sake of clarity, hydrogen bonding is not presented.

Crystal data

C6H7N2O+·C2Cl3O2·C6H6N2O F(000) = 832
Mr = 407.63 Dx = 1.537 Mg m3
Orthorhombic, Pna21 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2n Cell parameters from 7898 reflections
a = 13.7910 (3) Å θ = 3.1–30.4°
b = 22.6680 (5) Å µ = 0.55 mm1
c = 5.6340 (1) Å T = 293 K
V = 1761.27 (6) Å3 Prism, colourless
Z = 4 0.4 × 0.1 × 0.1 mm

Data collection

Agilent SuperNova, Dual, Cu at zero, Atlas diffractometer 4017 independent reflections
Radiation source: SuperNova (Mo) X-ray Source 3575 reflections with I > 2σ(I)
Mirror monochromator Rint = 0.031
Detector resolution: 10.4933 pixels mm-1 θmax = 27.5°, θmin = 3.1°
ω scans h = −17→17
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) k = −29→29
Tmin = 0.811, Tmax = 0.947 l = −7→7
16297 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.04 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.091 w = 1/[σ2(Fo2) + (0.0359P)2 + 0.8943P] where P = (Fo2 + 2Fc2)/3
S = 1.04 (Δ/σ)max < 0.001
4017 reflections Δρmax = 0.41 e Å3
241 parameters Δρmin = −0.57 e Å3
1 restraint Absolute structure: Flack (1983), 1791 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: 0.01 (6)

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.49348 (5) 0.58322 (3) 0.45563 (14) 0.04547 (17)
Cl2 0.44990 (9) 0.67585 (4) 0.11741 (18) 0.0850 (4)
Cl3 0.32105 (7) 0.65069 (5) 0.50880 (15) 0.0770 (3)
N1 −0.29717 (16) 0.50785 (9) 1.1681 (4) 0.0377 (5)
H15 −0.330 (2) 0.4892 (15) 1.285 (6) 0.057*
N2 −0.16743 (16) 0.62843 (10) 0.4929 (5) 0.0396 (5)
H16A −0.217 (2) 0.6478 (14) 0.551 (7) 0.059*
H16B −0.135 (3) 0.6394 (15) 0.362 (6) 0.059*
N3 0.19060 (17) 0.78523 (10) −0.3220 (5) 0.0425 (5)
N4 0.06680 (19) 0.61873 (11) 0.1998 (5) 0.0495 (7)
H17A 0.030 (3) 0.5952 (17) 0.294 (8) 0.074*
H17B 0.131 (3) 0.6133 (15) 0.197 (7) 0.074*
O1 0.25905 (13) 0.57929 (9) 0.1146 (4) 0.0524 (5)
O2 0.40234 (13) 0.54301 (8) 0.0115 (4) 0.0426 (4)
O3 −0.06660 (12) 0.66646 (9) 0.0707 (4) 0.0473 (5)
O4 −0.05512 (13) 0.55797 (8) 0.5595 (4) 0.0488 (5)
C1 −0.20142 (19) 0.49801 (11) 1.1584 (5) 0.0384 (6)
H1 −0.1721 0.4742 1.2722 0.046*
C2 −0.14636 (17) 0.52287 (10) 0.9812 (5) 0.0356 (5)
H2 −0.0801 0.5155 0.9729 0.043*
C3 −0.19079 (17) 0.55906 (10) 0.8150 (4) 0.0293 (5)
C4 −0.29018 (18) 0.56864 (11) 0.8322 (5) 0.0335 (5)
H4 −0.3214 0.5929 0.7233 0.04*
C5 −0.34193 (18) 0.54211 (11) 1.0107 (5) 0.0387 (6)
H5 −0.4085 0.5481 1.0217 0.046*
C6 −0.13130 (17) 0.58311 (10) 0.6111 (5) 0.0320 (5)
C7 0.2246 (2) 0.76108 (12) −0.1226 (6) 0.0454 (7)
H7 0.2848 0.7735 −0.0675 0.055*
C8 0.17586 (17) 0.71890 (11) 0.0064 (5) 0.0396 (6)
H8 0.2034 0.7027 0.1424 0.048*
C9 0.08482 (16) 0.70091 (10) −0.0701 (5) 0.0305 (5)
C10 0.0493 (2) 0.72548 (12) −0.2753 (5) 0.0384 (6)
H10 −0.0114 0.7145 −0.3326 0.046*
C11 0.1043 (2) 0.76648 (11) −0.3955 (5) 0.0433 (6)
H11 0.0797 0.7819 −0.5361 0.052*
C12 0.02224 (18) 0.65981 (11) 0.0724 (5) 0.0358 (6)
C13 0.34726 (17) 0.57605 (10) 0.1255 (4) 0.0306 (5)
C14 0.40010 (19) 0.61971 (11) 0.2972 (5) 0.0368 (6)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0384 (3) 0.0586 (4) 0.0395 (3) 0.0069 (3) −0.0118 (3) 0.0020 (3)
Cl2 0.1224 (9) 0.0644 (5) 0.0681 (6) −0.0526 (6) −0.0447 (6) 0.0302 (5)
Cl3 0.0848 (6) 0.0950 (6) 0.0510 (5) 0.0508 (5) −0.0198 (4) −0.0362 (5)
N1 0.0414 (12) 0.0353 (11) 0.0365 (13) −0.0078 (9) 0.0084 (10) 0.0028 (9)
N2 0.0375 (12) 0.0379 (11) 0.0435 (13) 0.0082 (9) 0.0147 (11) 0.0077 (11)
N3 0.0423 (13) 0.0351 (11) 0.0503 (14) −0.0051 (9) 0.0080 (11) 0.0057 (10)
N4 0.0317 (12) 0.0490 (14) 0.0678 (17) 0.0069 (10) 0.0141 (12) 0.0256 (13)
O1 0.0277 (9) 0.0589 (12) 0.0706 (14) 0.0023 (8) −0.0027 (10) −0.0192 (12)
O2 0.0346 (9) 0.0506 (10) 0.0426 (10) 0.0042 (8) −0.0017 (8) −0.0179 (9)
O3 0.0278 (9) 0.0557 (11) 0.0585 (13) 0.0039 (8) 0.0068 (9) 0.0201 (10)
O4 0.0367 (10) 0.0514 (11) 0.0585 (14) 0.0153 (8) 0.0200 (9) 0.0148 (10)
C1 0.0444 (15) 0.0377 (13) 0.0332 (15) 0.0002 (11) −0.0051 (11) 0.0055 (11)
C2 0.0307 (11) 0.0348 (12) 0.0413 (14) 0.0014 (9) 0.0001 (12) 0.0002 (12)
C3 0.0297 (12) 0.0279 (11) 0.0304 (12) −0.0023 (9) 0.0021 (10) −0.0034 (9)
C4 0.0300 (13) 0.0340 (13) 0.0364 (13) 0.0012 (10) 0.0031 (11) 0.0044 (10)
C5 0.0347 (13) 0.0381 (13) 0.0435 (14) −0.0010 (10) 0.0099 (12) 0.0013 (12)
C6 0.0295 (12) 0.0343 (12) 0.0321 (12) −0.0013 (9) 0.0071 (10) −0.0003 (11)
C7 0.0327 (14) 0.0460 (16) 0.0577 (18) −0.0081 (12) −0.0007 (12) 0.0027 (14)
C8 0.0317 (12) 0.0450 (14) 0.0422 (15) 0.0006 (10) −0.0029 (11) 0.0061 (13)
C9 0.0288 (11) 0.0289 (11) 0.0337 (12) 0.0018 (9) 0.0050 (10) 0.0020 (10)
C10 0.0337 (13) 0.0412 (14) 0.0404 (14) −0.0027 (11) −0.0053 (11) 0.0025 (12)
C11 0.0490 (15) 0.0441 (14) 0.0369 (14) 0.0005 (12) −0.0016 (13) 0.0113 (13)
C12 0.0313 (13) 0.0343 (12) 0.0418 (15) 0.0018 (10) 0.0064 (11) 0.0060 (11)
C13 0.0323 (12) 0.0325 (11) 0.0269 (11) −0.0016 (9) −0.0010 (10) −0.0008 (10)
C14 0.0435 (15) 0.0342 (14) 0.0327 (12) 0.0039 (11) −0.0083 (11) −0.0023 (11)

Geometric parameters (Å, º)

Cl1—C14 1.772 (3) C1—H1 0.93
Cl2—C14 1.765 (3) C2—C3 1.387 (4)
Cl3—C14 1.762 (3) C2—H2 0.93
N1—C5 1.331 (4) C3—C4 1.391 (3)
N1—C1 1.340 (3) C3—C6 1.513 (3)
N1—H15 0.90 (3) C4—C5 1.372 (4)
N2—C6 1.322 (3) C4—H4 0.93
N2—H16A 0.87 (3) C5—H5 0.93
N2—H16B 0.90 (4) C7—C8 1.376 (4)
N3—C11 1.330 (4) C7—H7 0.93
N3—C7 1.335 (4) C8—C9 1.389 (3)
N4—C12 1.326 (3) C8—H8 0.93
N4—H17A 0.91 (4) C9—C10 1.374 (4)
N4—H17B 0.89 (4) C9—C12 1.503 (3)
O1—C13 1.220 (3) C10—C11 1.378 (4)
O2—C13 1.245 (3) C10—H10 0.93
O3—C12 1.234 (3) C11—H11 0.93
O4—C6 1.230 (3) C13—C14 1.564 (3)
C1—C2 1.375 (4)
C5—N1—C1 121.8 (2) N3—C7—C8 123.9 (3)
C5—N1—H15 122 (2) N3—C7—H7 118
C1—N1—H15 116 (2) C8—C7—H7 118
C6—N2—H16A 120 (2) C7—C8—C9 118.8 (3)
C6—N2—H16B 116 (2) C7—C8—H8 120.6
H16A—N2—H16B 124 (3) C9—C8—H8 120.6
C11—N3—C7 116.4 (2) C10—C9—C8 117.7 (2)
C12—N4—H17A 118 (2) C10—C9—C12 119.7 (2)
C12—N4—H17B 123 (2) C8—C9—C12 122.4 (2)
H17A—N4—H17B 119 (3) C9—C10—C11 119.4 (2)
N1—C1—C2 120.3 (2) C9—C10—H10 120.3
N1—C1—H1 119.8 C11—C10—H10 120.3
C2—C1—H1 119.8 N3—C11—C10 123.7 (3)
C1—C2—C3 119.2 (2) N3—C11—H11 118.1
C1—C2—H2 120.4 C10—C11—H11 118.1
C3—C2—H2 120.4 O3—C12—N4 123.4 (2)
C2—C3—C4 118.7 (2) O3—C12—C9 119.3 (2)
C2—C3—C6 119.1 (2) N4—C12—C9 117.3 (2)
C4—C3—C6 122.1 (2) O1—C13—O2 128.2 (2)
C5—C4—C3 119.7 (2) O1—C13—C14 117.2 (2)
C5—C4—H4 120.2 O2—C13—C14 114.6 (2)
C3—C4—H4 120.2 C13—C14—Cl3 112.49 (18)
N1—C5—C4 120.2 (2) C13—C14—Cl2 106.43 (18)
N1—C5—H5 119.9 Cl3—C14—Cl2 109.97 (15)
C4—C5—H5 119.9 C13—C14—Cl1 110.78 (17)
O4—C6—N2 124.3 (2) Cl3—C14—Cl1 107.15 (15)
O4—C6—C3 118.4 (2) Cl2—C14—Cl1 110.04 (15)
N2—C6—C3 117.3 (2)
C5—N1—C1—C2 −0.8 (4) C7—C8—C9—C12 −173.6 (2)
N1—C1—C2—C3 1.1 (4) C8—C9—C10—C11 −0.1 (4)
C1—C2—C3—C4 −0.5 (4) C12—C9—C10—C11 175.2 (2)
C1—C2—C3—C6 −176.0 (2) C7—N3—C11—C10 1.5 (4)
C2—C3—C4—C5 −0.4 (4) C9—C10—C11—N3 −1.5 (4)
C6—C3—C4—C5 175.0 (2) C10—C9—C12—O3 −30.3 (4)
C1—N1—C5—C4 −0.1 (4) C8—C9—C12—O3 144.8 (3)
C3—C4—C5—N1 0.7 (4) C10—C9—C12—N4 151.4 (3)
C2—C3—C6—O4 20.0 (4) C8—C9—C12—N4 −33.5 (4)
C4—C3—C6—O4 −155.4 (3) O1—C13—C14—Cl3 17.9 (3)
C2—C3—C6—N2 −163.1 (2) O2—C13—C14—Cl3 −163.93 (19)
C4—C3—C6—N2 21.5 (4) O1—C13—C14—Cl2 −102.6 (3)
C11—N3—C7—C8 0.1 (4) O2—C13—C14—Cl2 75.6 (2)
N3—C7—C8—C9 −1.6 (4) O1—C13—C14—Cl1 137.8 (2)
C7—C8—C9—C10 1.5 (4) O2—C13—C14—Cl1 −44.0 (3)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N1—H15···O2i 0.90 (3) 1.78 (3) 2.679 (3) 175 (3)
N2—H16A···N3ii 0.87 (3) 2.11 (3) 2.958 (3) 164 (3)
N2—H16B···O3 0.90 (4) 1.99 (4) 2.887 (3) 178 (3)
N4—H17A···O4 0.91 (4) 2.08 (4) 2.972 (3) 167 (4)
N4—H17B···O1 0.89 (4) 1.98 (4) 2.839 (3) 160 (3)
C1—H1···O1i 0.93 2.58 3.211 (3) 126
C2—H2···O4iii 0.93 2.55 3.358 (3) 146
C7—H7···O3iv 0.93 2.58 3.489 (3) 166
C11—H11···Cl2v 0.93 2.82 3.711 (3) 162

Symmetry codes: (i) −x, −y+1, z+3/2; (ii) x−1/2, −y+3/2, z+1; (iii) −x, −y+1, z+1/2; (iv) x+1/2, −y+3/2, z; (v) x−1/2, −y+3/2, z−1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: GG2095).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812037002/gg2095sup1.cif

e-68-o2818-sup1.cif (24.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812037002/gg2095Isup2.hkl

e-68-o2818-Isup2.hkl (192.9KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812037002/gg2095Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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