Abstract
Cerebral ischemia and excitotoxic injury induce transient or permanent bioenergetic failure, and may result in neuronal apoptosis or necrosis. We have previously shown that ATP depletion and activation of AMP-activated protein kinase (AMPK) during excitotoxic injury induces neuronal apoptosis by transcription of the pro-apoptotic BH3-only protein, Bim. AMPK, however, also exerts pro-survival functions in neurons. The molecular switches that determine these differential outcomes are not well understood. Using an approach combining biochemistry, single-cell imaging and computational modeling, we here demonstrate that excitotoxic injury activated the bim promoter in a FOXO3-dependent manner. The activation of AMPK reduced AKT activation, and led to dephosphorylation and nuclear translocation of FOXO3. Subsequent mutation studies indicated that bim gene activation during excitotoxic injury required direct FOXO3 phosphorylation by AMPK in the nucleus as a second activation step. Inhibition of this phosphorylation prevented Bim expression and protected neurons against excitotoxic and oxygen/glucose deprivation-induced injury. Systems analysis and computational modeling revealed that these two activation steps defined a coherent feed-forward loop; a network motif capable of filtering any effects of short-term AMPK activation on bim gene induction. This may prevent unwanted AMPK-mediated Bim expression and apoptosis during transient or physiological bioenergetic stress.
Keywords: excitotoxicity, energy depletion, BH3-only protein BIM, FOXO3, computational modeling, network motifs
Excitotoxicity has been implicated in the pathogenesis of cerebral ischemia and several neurodegenerative disorders,1, 2, 3 and results from abnormal levels of the excitatory neurotransmitter glutamate (GLUT) in the synaptic cleft.4, 5, 6 The extent of ATP depletion during excitotoxic injury critically determines neuronal outcome.7 Neurons that fail to restore their ATP levels undergo rapid excitotoxic necrosis.7 However, many of the neurons that initially overcome the energetic crisis and recover their ATP levels nevertheless undergo a delayed apoptotic death.8 ATP depletion activates the AMP-activated protein kinase (AMPK), which adapts the cellular response to bioenergetic stress.9 AMPK switches off anabolic pathways, preventing ATP consumption, and switches on catabolic pathways, increasing glucose uptake and ATP production.10 AMPK-dependent plasma membrane translocation of the glucose transporter 3, and subsequent glucose uptake mediate tolerance of neurons to excitotoxic or ischemic injury.11, 12 In contrast to these cytoprotective mechanisms, however, prolonged AMPK activation has also been shown to contribute to ischemic injury and excitotoxicity.9, 13, 14 We recently demonstrated that prolonged activation of AMPK mediates excitotoxic apoptosis by inducing the expression of the pro-apoptotic Bcl-2 family protein Bim.13 However, the mechanisms that AMPK utilizes to switch on the transcriptional activation of bim during excitotoxic apoptosis remain unknown. Here, we describe the signaling pathways that couple AMPK activation to bim gene expression during excitotoxic apoptosis, and provide a mathematical framework that explains cell fate decision-making during AMPK activation.
Results
Bim induction during excitotoxic apoptosis requires AP-1 and FOXO3
We have previously shown that brief stimulation of NMDA receptors in cortical neurons or cerebellar granule neurons (CGNs) induces a bim-dependent, delayed excitotoxic cell death characteristic of caspase-independent apoptosis.11, 13, 15 Western blot (Figure 1a) and qPCR analysis confirmed that CGNs exposed to GLUT/glycine (GLY) (100/10 μM) showed elevated Bim levels. Excitotoxic injury was significantly reduced in CGNs deficient in bim (Figure 1b).
We next addressed the signaling pathways involved in bim activation during excitotoxic injury. Excellent candidates are the FOXO3 and AP-1 transcription factors, which have been implicated in Bim expression during neuronal apoptosis.13, 16, 17, 18 We transfected CGNs with a reporter construct bearing the wild-type (wt) bim promoter sequence, or bim promoter constructs harboring mutations in the FOXO3 or AP-1 binding sites. Luciferase activity was significantly increased in GLUT-treated neurons expressing the wt bim promoter. However, this effect was abrogated by either bim promoter mutation (Figure 1c), indicating that FOXO3 and AP-1 binding sites were necessary for bim promoter activation.
AMPK-dependent downregulation of the mTOR/AKT pathway during excitotoxicity
Previously, we demonstrated that pAMPK activated JNKs, with JNK activation contributing to bim expression and apoptosis.13 We therefore next focused on exploring the role of FOXO3 activation in bim gene induction, and its control by AMPK. Firstly, we analyzed AMPK activation during excitotoxicity by western blot analysis of pAMPKα (Thr172) levels. AMPK activation was evident 10 min after GLUT exposure, and recovered to baseline levels after 120 min (Figure 2a).
The mTOR kinase complex (mTORC) is negatively regulated by AMPK.19 To address the regulation of mTORC during excitotoxicity, we monitored phospho-mTOR (Ser2448) levels (Figure 2b). GLUT treatment decreased p-mTOR levels 10 min after exposure, coinciding with the peak of AMPK activation. Notably, p-mTOR levels were persistently downregulated in response to GLUT. mTORC2 has been described as an important activator of the pro-survival kinase AKT.20 We detected an early decrease in pAKT (Ser473) levels in response to GLUT (Figure 2c). In contrast to p-mTOR, however, pAKT levels partially recovered 2–8 h after GLUT exposure with complete recovery after 16/24 h. The inactivation of AKT enables FOXO3-dependent gene transcription by preventing the cytosolic translocation of FOXO3.21 Western blot analysis of phospho-FOXO3 (Thr32) levels showed a significant decrease 2–4 h after GLUT exposure (Figure 2d).
To demonstrate that AMPK activation was responsible for the decrease in pAKT levels during excitotoxic injury, we depleted AMPK levels with vectors expressing an siRNA targeting AMPK-α1/α2, or a control sequence13 (Supplementary Figure 1). CGNs with depleted AMPK levels presented significantly higher levels of phospho-AKT (Ser473) compared with control-transfected neurons (Figure 2e). This result was confirmed using the pharmacological inhibitor of AMPK, compound C (CC). CGNs pretreated with CC (10 μM) 45 min before GLUT exposure presented with 69.5±19.5% higher phospho-AKT (Ser473) levels 30 min after GLUT treatment, compared with those pretreated with vehicle (data not shown). AMPK-α1/α2 depletion also increased phospho-FOXO3 (Thr32) levels in neurons exposed to GLUT (Figure 2e). Confirming the downregulation of FOXO3 phosphorylation by AMPK, transfection of CGNs with a constitutively active mutant of AMPK (AMPK-CA) resulted in a decrease in phospho-FOXO3 (Thr32) levels and an increase in Bim expression (Supplementary Figures 2A and B). Finally, to demonstrate that FOXO3 dephosphorylation was a consequence of AKT downregulation, we transfected CGNs with a constitutively active mutant of AKT (AKT-CA). The expression of AKT-CA prevented the decrease in phospho-FOXO3 (Thr32) levels 2 and 4 h after GLUT exposure (Figure 2f).
AMPK activation during excitotoxicity induces FOXO3 nuclear translocation
We next analyzed whether the nuclear presence of FOXO3 was also increased in response to GLUT. CGNs were transfected with a FOXO3-GFP plasmid and exposed to either GLUT/GLY (100/10 μM) or experimental buffer. Confocal images of single neurons were taken for FOXO3-GFP, Hoechst 33258 and propidium iodide (PI). Quantification of the GFP fluorescence intensity inside and outside the nucleus allowed the calculation of a nuclear/cytoplasmic FOXO3-GFP ratio. In cells exposed to GLUT, 29.3±8.3% of neurons showed a sudden and permanent increase in this ratio, occurring with a delay that varied between 1 and 5 h after GLUT exposure (mean delay of 3 h 28±33 min) (Figures 3a and b). Of note, all neurons that exhibited this sudden and permanent increase underwent nuclear shrinkage and cell death 7–12 h after GLUT exposure (mean time-point 9 h 14±56 min), as indicated by the loss of the GFP fluorescence signal and an increase in PI fluorescence. The remaining neurons that survived (62.8±2.1% of the total population) did not show any change in their nuclear/cytoplasmic ratio, or showed a transient increase that recovered to baseline levels (mean duration of ratio increase 1 h 2±7 min) (Supplementary Figures 3A and B). Cells exposed to experimental buffer only did not show any alterations in the nuclear/cytoplasmic FOXO-GFP ratio (Supplementary Figure 3C).
We investigated whether AMPK activation alone was sufficient to induce FOXO3 nuclear translocation. Expression of the AMPK-CA construct significantly increased the percentage of neurons showing FOXO3-GFP nuclear presence when compared with cells transfected with a control vector (Supplementary Figure 2C).
We next tested whether the nuclear translocation of FOXO3-GFP during excitotoxic injury was prevented either by expression of AKT-CA, or by inhibition of AMPK. We compared the percentage of cells exhibiting nuclear, cytoplasmic or cytoplasmic and nuclear presence of FOXO3-GFP 3.5 h after GLUT or vehicle exposure. GLUT exposure significantly increased the percentage of neurons with nuclear FOXO3-GFP compared with control neurons, and decreased the percentage of neurons with cytoplasmic FOXO3-GFP (Figures 3c and d). Both effects were abrogated by AKT-CA expression (Figure 3e) or by pretreatment with CC (10 μM) (Figure 3d). These results were confirmed with immunofluorescence experiments on neurons transfected with AMPK siRNA (Figures 3e and f). These data demonstrated that excitotoxic injury induces FOXO3 nuclear translocation in an AMPK- and AKT-dependent manner.
FOXO3 nuclear translocation is not sufficient for bim expression and cell death
In addition to FOXO3 nuclear translocation, further post-translational modifications may be necessary to stimulate its transcriptional activity.17, 22 This hypothesis was tested by co-expressing the bim promoter plasmid with a FOXO3 construct, mutated at the AKT phosphorylation sites and therefore permanently localized to the nucleus (‘FOXO3-nuclear'21). GLUT/GLY (100/10 μM) exposure significantly increased luciferase activity in CGNs expressing ‘FOXO3-nuclear' (Supplementary Figure 4A), suggesting that FOXO3 required further post-translational modifications to increase its binding to the bim promoter. Additional single-cell experiments implicated AMPK in mediating these events. Neurons transfected with FOXO3-GFP were exposed to GLUT, and 2 h later treated with CC (10 μM). We hypothesized that this treatment paradigm would avoid AMPK inhibition during or shortly after GLUT exposure, allowing FOXO3 nuclear translocation, but inhibiting AMPK subsequent to this. Indeed, late addition of CC did not prevent FOXO3-GFP nuclear translocation. However, all neurons that displayed a permanent FOXO3 nuclear translocation failed to undergo subsequent nuclear shrinkage and cell death (Figures 4a and b), and remained viable until termination of the experiments.
To corroborate these single-cell experiments we analyzed Bim and FOXO3 expression and localization by western blotting in CGNs treated with CC 2 h after GLUT exposure. CC-treated neurons expressed lower levels of Bim, without a decrease in FOXO3 nuclear translocation (Figures 4c and d). GLUT-induced cell death was also significantly impaired in this setting (Figure 4e). Taken together, this data suggest that AMPK may have a further essential role in bim activation that extends beyond inducing FOXO3 translocation, and that requires prolonged AMPK activity.
We also investigated FOXO3 translocation and Bim expression during varied durations of pharmacologically-induced AMPK activity. We found that although CGNs subjected to continuous AICAR treatment (2.5 mM) showed increased Bim expression, no significant Bim induction occurred with transient addition of AICAR to the cultures for 1 h despite FOXO3 nuclear translocation in both treatment paradigms. Increased nuclear localization of pAMPK was also observed after continuous, but not transient, AICAR treatment (Figure 4f), confirming that prolonged AMPK activation is required for Bim expression, and suggesting that nuclear pAMPK may mediate this Bim expression.
FOXO3 activation by AMPK is a coherent feed-forward network motif that can act as a suppressor of transient stress signals
To understand the regulatory role of AMPK in FOXO3 activation and Bim expression from a systems point of view, we employed computational modeling. Initially, we modeled (by ordinary differential equations) a one-step FOXO3 activation where pAMPK-mediated Akt inhibition lead to FOXO3 dephosphorylation (FOXO3dephos) and activated FOXO3 for Bim expression (Figure 5a, denoted by (1)). This ‘linear' pathway predicted a similar FOXO3 activation, and therefore Bim expression, following both short-term and long-term periods of AMPK activity (Figure 5b). However, this linear model neither explained our results that the duration of AMPK activation may determine whether Bim is expressed or not (Figure 4f), nor did it support previous findings that short-term pAMPK activation was neuroprotective.11, 23 We therefore assumed that an additional regulation step was required to prevent Bim expression following short-term AMPK activation, while maintaining robust Bim expression following prolonged AMPK activation.
We incorporated into our model a second activation step of FOXO3dephos by pAMPK (‘FOXO3ampk') (Figure 5a, dashed line denoted by (2)). In this model, Bim induction was suppressed for short-term pAMPK activity (Figure 5c, 40 min), as the pAMPK signal (second activation step) was no longer active by the time the signal of the first activation step had induced FOXO3 dephosphorylation. Prolonged pAMPK activation, however, outlasted the delay of the first step and led to a pronounced increase in Bim expression (Figure 5c, 100 min). This gave a qualitatively good explanation of our findings in Figure 4f, where long-term AMPK activation led to significant Bim expression, whereas short-term activation did not. The inclusion of a second FOXO3 activation step by pAMPK resulted in a network motif known as a coherent feed-forward loop (CFL).
AMPK induces bim expression by direct FOXO3 phosphorylation
AMPK has been shown to regulate the DNA binding of transcription factors by direct phosphorylation.10, 24, 25 Interestingly, in non-neuronal cells, AMPK has been shown to specifically activate FOXO3 by phosphorylation.24 To validate the modeling results we tested if AMPK phosphorylation of FOXO3 was required for Bim expression. We co-expressed a FOXO3 construct (FOXO3-6A), which is mutated at the six residues (Thr179, Ser399, Ser413, Ser439, Ser555 and Ser588) phosphorylated by AMPK, alongside the bim promoter reporter plasmid. As expected, CGNs co-transfected with FOXO3 wt and treated with GLUT showed a significant increase in luciferase activity compared with control neurons. However, in neurons co-transfected with the FOXO3-6A mutant, this effect was abrogated (Figure 6a, upper panel). These results were also confirmed by western blot analysis of Bim protein levels (Figure 6a, lower panel).
Next we tested whether FOXO3 translocation during excitotoxicity also required FOXO3 phosphorylation by AMPK. CGNs were transfected with FOXO3-6A or FOXO3 wt constructs and then exposed to GLUT or experimental buffer. Three hours after exposure cultures were subjected to subcellular fractionation. GLUT treatment induced a similar increase in FOXO3 wt and FOXO3-6A nuclear levels when compared with control neurons (Figure 6b). A similar decrease was observed in cytosolic FOXO3 wt and FOXO3-6A levels (Flag M2-tag), suggesting that FOXO3 phosphorylation by AMPK did not affect FOXO3 translocation. We also observed that pAMPKα (Thr172) levels were increased in the nucleus and decreased in the cytosol after GLUT treatment (Figure 6b), suggesting the nuclear translocation of both pAMPK and FOXO3 during excitotoxicity. The fact that nuclear pAMPK is enriched 3 h after GLUT exposure indicates that FOXO3 phosphorylation by AMPK can occur subsequent to FOXO3 nuclear translocation. We next directly tested whether the phosphorylation state of FOXO3 in the nucleus depended on AMPK activity. CGNs transfected with the ‘FOXO3-nuclear' mutant were pretreated with CC (10 μM) and later exposed to GLUT. Four hours later, we detected elevated levels of ‘FOXO3-nuclear' serine phosphorylation in neurons exposed to GLUT when compared with controls. This effect was abrogated in neurons pretreated with CC (Figure 6c).
The above results showed that FOXO3 phosphorylation by AMPK increased bim promoter activation during excitotoxic injury. This phosphorylation was specific to the bim promoter, as FOXO3-6A expression did not affect the activation of a chimeric promoter bearing six canonical FOXO-binding elements (TTGTTTAC box) not present in the bim promoter (Supplementary Figure 4B). We next tested if inhibition of FOXO3 phosphorylation by AMPK could facilitate the activation of alternative FOXO3 targets, such as the promoter of the stress tolerance gene MnSOD.22 A FOXO3 wt or a FOXO3-6A construct were co-expressed with a luciferase reporter plasmid containing the MnSOD promoter sequence (pSOD-luc) in CGNs. GLUT exposure increased luciferase activity in control neurons transfected with FOXO3 wt (Figure 6d). However, FOXO3-6A expression increased luciferase activity in neurons exposed to either experimental buffer or GLUT. This effect was abrogated by mutation of the FOXO3 binding sites in the MnSOD promoter (pSOD-luc-mut) (Figure 6d).
FOXO3 activation by AMPK is required for cell death
Next, we analyzed whether inhibition of FOXO3 phosphorylation by AMPK decreased neuronal injury during excitotoxicity (Figure 7a). We co-transfected CGNs with a GFP-expressing plasmid and either the FOXO3 wt, dominant-negative FOXO3 (DN-FOXO3), or FOXO3-6A expression plasmid. Cell death was determined by evaluating the percentage of PI+ and GFP+ cells before and 16 h after GLUT/GLY (100/10 μM) exposure. As shown in Figure 7a, FOXO3 wt-transfected neurons treated with GLUT showed significantly higher levels of cell death than neurons exposed to vehicle. However, cell death was negligible in cells transfected with DN-FOXO3 or FOXO3-6A.
To explore the possible relevance of FOXO3 regulation by AMPK in ischemic neuronal death, we subjected primary mouse cortical neurons to oxygen/glucose deprivation (OGD)-induced neuronal injury. Neurons were co-transfected with a GFP expression vector and either DN-FOXO3, or FOXO3-6A expression constructs. Cultures were subjected to OGD for 30 min in a hypoxia chamber, and subsequently returned to normoxic/normoglycemic conditions for 24 h. Cell death was determined by evaluating the percentage of pyknotic nuclei in the GFP+ cells. As shown in Figure 7b, transfection with FOXO3-6A led to significantly lower levels of cell death when compared with cells co-transfected with a control plasmid, an effect that was comparable to the effect of DN-FOXO3.
Discussion
The present study describes the pro-apoptotic activity of the energy sensor AMPK during excitotoxic injury. Although AMPK activation has been associated with cell survival,11, 23, 26 it is now evident that it is also involved in long-term cell fate decisions. AMPK activation has been shown to activate apoptosis in different cell types,27, 28 including neurons,9, 13 and this apoptosis occurs after prolonged periods of AMPK activation.27, 28 AMPK has also been shown to mediate ischemic neuronal death in vivo.14 As apoptosis is a terminal cellular decision, the signaling pathways controlling the pro-apoptotic activities of AMPK require a complex regulation. We here demonstrate that the combined activation of AP-1 and FOXO3 transcription factors by AMPK is required for the transcriptional activation of the pro-apoptotic bim gene. Indeed, bim activation and cell death induction required both AMPK-dependent FOXO3 nuclear translocation and direct FOXO3 phosphorylation by AMPK. Systems analysis and computational modeling showed that this two-step activation of FOXO3 provides a means for filtering out effects of short-term AMPK activation on bim induction, while providing robust bim activation following prolonged AMPK activity.
Previous work from our group has demonstrated that AMPK mediates cell death by expression of the pro-apoptotic BH3-only proteins Bim and, in some cell types, Bmf.13, 29 Bim promoter mutation of either the FOXO3 or the AP-1 binding site prevented bim activation in neurons during excitotoxicity. We demonstrate that in addition to the engagement of multiple transcription factors, individual transcription factors may also be subject to additional post-translational control steps in order to efficiently activate bim transcription. We observed that AMPK transiently inhibited AKT signaling during excitotoxicity, and that AKT-mediated FOXO3 dephosphorylation was a key step that allowed the nuclear translocation of FOXO3.21 This translocation was permanent in neurons, which underwent apoptosis, and was transient or did not occur in surviving cells. Specific mechanisms must therefore exist to restore pAKT/pFOXO3 levels in surviving neurons. Survival responses during excitotoxicity have been associated with enhanced neuronal glucose uptake and ATP availability, as well as with growth factor signaling,9, 12 suggesting that these factors could restore pAKT/pFOXO3 levels. The persistent mTOR dephosphorylation after GLUT exposure suggests the involvement in this process of other AKT regulators besides mTOR. Given the central role of AKT in several cell survival pathways such as PI3K and GSK-3β signaling,30 the regulation of AKT independently from mTOR and AMPK pathways is not surprising and may involve phosphatases such as PP2A or PTEN.31, 32
The AKT-dependent nuclear translocation of FOXO3, however, was not the sole determinant of FOXO3-dependent bim gene expression. Both biochemical and single-cell imaging experiments, as well as experiments using FOXO3-6A, demonstrated that bim activation and cell death additionally required FOXO3 phosphorylation by AMPK. In contrast, the transcription of the MnSOD promoter was stimulated by FOXO3-6A expression alone. This finding suggested that direct phosphorylation by AMPK could guide FOXO3 towards its binding to the bim promoter instead of towards others targets such as the MnSOD promoter.
The two-step activation of FOXO3 by AMPK is a CFL network motif. Well established in systems biology, and overrepresented in pathways of gene regulation, CFLs are known to induce gene expression upon sustained, but not transient signals.33, 34 Indeed, our identified CFL enables the filtering of transient AMPK impulses so that shorter periods of AMPK activity do not lead to Bim induction and allow pAMPK to exert its pro-survival effects.11 This filtering is achieved by the delay required for the AKT-mediated FOXO3 dephosphorylation in the first activation step. The period of AMPK activity must outlast this delay to activate FOXO3 in the second activation step. Increased survival signaling, through AKT activation, would prolong the delay of the first activation step, requiring a longer period of AMPK activity to induce Bim expression. This idea is supported by evidence showing a reduction in apoptosis following stimulation of AKT.35 Consequently, the CFL of FOXO3 activation may regulate Bim expression based on both stress duration and the extent of pro-survival signaling.
Previously, we demonstrated the involvement of JNK in Bim expression and the nuclear translocation of C-JUN induced by AMPK during excitotoxicity.13 Neurons have high levels of constitutive JNK1 activity,36 so it remains to be shown whether any surplus activation of JNK by AMPK contributes to bim gene induction during excitotoxic apoptosis. Such a potential third activation step by AMPK cannot be excluded, and may integrate other stress-related signals to form a more complex cascade of CFLs. Oxidative stress, for example, may activate the JNK/AP-1 pathway.36 Similarly, we cannot exclude a role of other transcription factors, such as Myb,18 in bim activation. Additionally, the FOXO family of transcription factors may be subject to other post-translational modifications such as JNK phosphorylation or SIRT1 de-acetylation.22, 37
AMPK has previously been shown to control the DNA-binding of different transcription factors or co-factors by phosphorylation.10, 24, 25 AMPK phosphorylation of FOXO3 was not required for its nuclear translocation (see also Greer et al.24). However, it is possible that FOXO3 dephosphorylation and its subsequent nuclear translocation is a requirement for subsequent post-translational modifications (that is, FOXO3 phosphorylation by AMPK).17 Indeed, this is a necessary condition for the functioning of the proposed CFL. We provided evidence of nuclear effects of AMPK on FOXO3 with Bim induction only detected after sustained AMPK activation and nuclear presence of pAMPKα. Shorter periods of AMPK activity did not lead to AMPK translocation or Bim expression, although FOXO3 nuclear translocation was maintained in both scenarios. This evidence suggested that interaction of FOXO3 and AMPK in the nucleus could be a requirement for bim promoter activation and apoptosis. Interestingly, neuronal apoptosis was recently described in a model of Huntington's disease as dependent on nuclear accumulation of AMPK-α1.38
In conclusion, our data suggest that FOXO3 activation represents a key step during bim-mediated excitotoxic neuronal death. The complex interplay between cellular bioenergetics, AMPK activation, and mTOR/AKT/FOXO3 signaling provides a molecular framework for cell fate decision making, preventing unwanted apoptosis activation during physiological AMPK activation or during conditions of mild bioenergetic stress.
Materials and Methods
Materials
Fetal calf serum and minimal essential medium were obtained from Invitrogen (Bio Sciences, Dublin, Ireland). GLUT, GLY, Hoechst 33258 and PI were from Sigma-Aldrich (Arklow, Ireland). AICAR was from Cell Signaling (Isis Ltd, Bray, Ireland). CC was obtained from Calbiochem (Merck Biosciences, Nottingham, UK).
Preparation of primary CGNs
Both mouse (C57BL) or rat (Sprague–Dawley) cerebella were isolated from postnatal day 7 pups. CGN cultures were obtained as described previously.7 Cells were plated on poly-Lysine-coated glass coverslips, glass Willco dishes, 6-well plates, and 24-well plates at 1 × 106 cells/ml, and maintained at 37 °C in a humidified atmosphere of 5% CO2/ 95% air. Experiments were performed after 8–10 days in vitro. All animal work was performed with ethics approval from the RCSI and under licenses granted to the authors by the Irish Department of Health and Children.
Plasmids, siRNA and transfection
The FOXO3-GFP plasmid in an EGFP-N1 vector backbone was kindly provided by MP Smidt (University Medical Center, Utrecht, The Netherlands). The AMPK-CA construct is the truncated version of AMPKα1 after residue 312 and includes a Myc tag and was a kind gift from David Carling (Imperial College London, London, UK). The AKT-CA construct expresses the myristoylated AKT-1 sequence and was kindly provided by S Pons (Biomedicine Institute, CSIC, Barcelona, Spain). The Firefly luciferase reporter plasmid containing 0.8 kB of the bim promoter sequence along with similar constructs with mutated FOXO3 or AP-1 binding sites were kindly provided by Eric Lam (Imperial College London, London, UK). The pECE-FOXO3-TM (termed here ‘FOXO3-nuclear'), a construct mutated at the three sites (T32A/S253A/S315A) of AKT phosphorylation and permanently located in the nucleus, was kindly provided by ME Greenberg (Harvard Medical School, Boston, MA, USA). The pECE-FOXO3-M2-flag and pECE-FOXO3-6A-M2-flag (sextuple mutant T179A/S339A/S413A/S555A/S588A/S626A at the sites for AMPK phosphorylation) were kind gifts from A Brunet (Harvard Medical School). The pmax-GFP construct was obtained from LONZA (Basel, Switzerland). The pRL-TK (TK Renilla luciferase), the 6 × DBE FOXO3 (reporter luciferase plasmid with six copies of the FOXO family protein-binding element) and the reporter plasmids containing the MnSOD promoter sequence (pSOD-luc) along with a similar construct with mutated FOXO3 binding sites (pSOD-luc-mut) were a kind gift from BM Burgering (University Medical Center, Utrecht, The Netherlands). The DN-FOXO3 expresses the DNA-binding domain (amino acids 141–268) of pECE-FOXO3-TM, and was kindly provided by I Torres-Aleman (Cajal Institute, CSIC, Madrid, Spain). siRNA targeting AMPK-α1/α2 (pFIV-AMPK-siRNA) and the control sequence (pFIV-Control-siRNA) were previously described.11 CGNs were transfected using calcium phosphate as previously described,11 the transfection reagent Neurofect from Genlantis (AMS Biotechnology, Milton, UK), or an electroporation kit (LONZA) as per manufacturer's instructions.
Live cell microscopy
CGNs on glass Willco dishes (WillCo Wells BV, Amsterdam, The Netherlands) were transfected with a FOXO3-GFP construct. After 48 h cells were treated for 30 min with GLUT and GLY (100 μM and 10 μM) in experimental buffer (120 mM NaCl, 3.5 mM KCl, 0.4 mM KH2PO4, 20 mM HEPES, 5 mM NaHCO3, 1.2 mM Na2SO4, 1.2 mM CaCl2, 1.2 mM MgCl2 and 15 mM glucose; pH 7.4). Control CGNs were treated with experimental buffer only. Next, CGNs were stained with Hoechst 33258 and PI at a final concentration of 0.1 μg/ml. Following treatment, the pre-conditioned medium, supplemented with HEPES (final concentration 20 mM), was replaced onto the cells and the dish was placed on the stage of a confocal microscope equipped with a 63 × 1.4 NA oil immersion objective and a thermostatically regulated chamber at 37 °C (LSM 710, Carl Zeiss, Jena, Germany). A thin layer of mineral oil (1.5 ml) was added onto the medium to prevent evaporation. GFP was excited at 488 nm with an Argon laser (AOTF set to 0.5%) and the emission collected in the range of 493–552 nm. Hoechst 33258 was excited at 405 nm (1% transmission, ND filter and AOTF) and the emission detected in the range of 410 to 480 nm. For the detection of plasma membrane permeabilization PI was excited at 543 nm (AOTF 1.5% transmission) and fluorescence emission was detected above 570 nm. Images were captured at 5 min intervals at 1.5 μm optical slice thickness. The resulting images were processed using MetaMorph 7.5 software (Molecular Devices, Wokingham, UK). The GFP average intensity fluorescence signal was quantified at the nucleus and cytoplasm to determine the nuclear/cytoplasmic FOXO3-GFP ratio. At least 33 single-cell experiments were analyzed for cells treated with GLUT, and 6 for those treated with experimental buffer. For quantification of FOXO3 nuclear translocation in neuronal populations, CGNs were plated on 24-well plates. At 3.5 h after GLUT/experimental buffer exposure, neurons were incubated for 30 min with Hoechst 33258 (final concentration 1 μg/ml) and PI (final concentration 0.2 μg/ml). For each group, 80–90 cells were analyzed in three independent experiments using an Eclipse TE 2000s inverted microscope (Nikon, Amstelveen, The Netherlands) and a 40 × 0.6 NA objective. Images of GFP, PI and Hoechst signals of single neurons were taken and processed with Image J software (NIH, Bethesda, MD, USA) to determine the nuclear/cytoplasmic FOXO3-GFP ratio. Neurons were scored as follows: FOXO3-GFP cytoplasmic (ratio <0.9), FOXO3-GFP nuclear (ratio >1.1), FOXO3-GFP cytoplasmic/nuclear (0.9<ratio<1.1).
Western blotting and immunoprecipitation
Western blotting was performed as described.11 Neurons were lysed with PIK buffer (1% NP-40, 150 mM NaCl, 20 mM Tris, pH 7.4, 10% glycerol, 1 mM CaCl2, 1 mM MgCl2, 400 μM sodium vanadate, 0.2 mM PMSF, 1 μg/ml leupeptin, 1 μg/ml aprotinin, 0.1% phosphatase inhibitor cocktails I and II of Sigma-Aldrich). Blots were probed with rabbit polyclonal antibodies to Bim (H-191) and HA (Y-11) from Santa Cruz Biotechnology (Dublin, Ireland). Phospho (Thr172) AMPKα antibody, total AMPKα, phospho (Thr183/Thr185) JNK, total JNK, phospho (Ser473) AKT, total AKT, phospho (Ser63) c-Jun, phospho (Ser2448) mTOR total mTOR, phospho (Ser253) FOXO3 and phospho (Thr32) FOXO3 all from Cell Signaling and anti-Myc tag and total FOXO3 antibodies from Millipore (Carrigtwohill, Ireland). Blots were also probed with mouse monoclonal antibodies to β-actin (clone DM 1A) and Anti-flag M2 from Sigma-Aldrich, and Neu-N and Anti-Phosphoserine clone 4A4 from Millipore. Horseradish peroxidase-conjugated secondary antibodies from Thermo Scientific (Fisher, Dublin, Ireland) were detected using SuperSignal West Pico Chemiluminescent Substrate (Thermo Scientific) and imaged using a FujiFilm LAS-3000 imaging system (FujiFilm, Dublin, Ireland). To normalize for protein load, membranes were reblotted (Re-Blot, Millipore) and incubated with an appropriate control antibody. Levels of the protein under study were expressed relative to protein load in each lane as determined by appropriate control protein content. pAMPKα levels were normalized to β-actin, as GLUT treatment decreased total AMPK levels. Densitometry analysis was performed using Image J software (NIH). A representative blot is shown from a total of at least three independent experiments, except where indicated. Immunoprecipitation was performed in cultured neurons lysed in PIK buffer and centrifuged at 22 000 × g for 20 min, and supernatants were incubated with antibodies bound to 25% agarose (Santa Cruz Biotechnology) overnight. The immunoprecipitates were washed three times with the same lysis buffer, resuspended in 2.5 × SDS loading buffer and analyzed by western blot.
Cytosolic and nuclear fractionation
Nuclear and cytosolic fractions were obtained from total neuronal lysates as described.39 The quality of the fractionation was determined by assaying for the presence of the nuclear protein Neu-N.
Cell death assays
CGNs were cultured on 24-well plates. For determination of apoptotic morphology cells were stained live with Hoechst 33258 at a final concentration of 1 μg/ml. After incubation for 10 min, nuclear morphology was observed and cells with condensed nuclei were scored as pyknotic and expressed as a percentage of the total population. For determination of neuronal mortality cells were transfected with a pMax-GFP and different constructs under evaluation in a 1 : 5 ratio. GFP-positive cells (GFP+ cells) were counted before treatment to determine the baseline level of transfected cells at time-point 0, and were counted again 2 h after treatment. Results were expressed as percentage of GFP+ cells at time 0. Neurons were counted in 12 different fields using an Eclipse TE 300 inverted microscope (Nikon) and a 20 × 0.45 NA objective. All assays were done in triplicate in at least three independent experiments.
Luciferase assays
CGNs were transfected with luciferase reporter constructs containing different promoters along with a Renilla luciferase expression plasmid (pRL-TK) for normalization. Neurons were lysed in passive lysis buffer and luciferase activity was analyzed using a luminometer and dual luciferase assay kit according to the manufacturer Promega (Medical Supply, Dublin, Ireland). Transfections were performed in triplicate dishes and relative luciferase counts were normalized using TK Renilla luciferase co-transfection. Background luminescence was subtracted, and Luciferase activity was expressed as fold of the increase with respect to the control.
Immunocytochemistry
Following treatment, CGNs cultured on glass coverslips were fixed (3% paraformaldehyde), permeabilised (0.1% Triton x-100 in PBS), blocked (5% horse serum (Invitrogen Bio Sciences), 0.3% Triton x-100 in PBS) and incubated with an antibody against FOXO3 (Millipore), at room temperature for 2 h. FOXO3 staining was detected with an anti-rabbit Alexa-Fluor-568-conjugated secondary antibody (Invitrogen Bio Sciences). Nuclei were also stained with Hoechst 33258. CGNs were imaged on the LSM 710 microscope detailed above and excited using 561, 488 and 405 nm lasers. Images were analyzed using ImageJ. The cytoplasmic and nuclear FOXO3 average intensity was quantified and CGNs were scored as cytoplasmic, nuclear or cyto/nuclear as described above.
Gene targeted mice
The generation and genotyping of bim−/− mice has been previously described.40 The bim−/− mice were originally generated on a mixed C57BL/6 × 129SV genetic background, using 129SV-derived ES cells, but had been backcrossed for >12 generations onto the C57BL/6 background.
Oxygen and glucose deprivation in cortical neurons
Cortical neurons cultured on 24-well plates were transfected with a pMax-GFP plasmid and different constructs under evaluation in a 1 : 5 ratio. Before OGD induction, cells were rinsed in pre-warmed glucose-free media and transferred to the anaerobic chamber. The anaerobic chamber had an atmosphere consisting of 1.5% O2, 5% CO2 and 85% N2. Cells were incubated in OGD media consisting of 2 mM CaCl2, 125 mM NaCl, 25 mM NaHCO3, 2.5 mM KCl, 1.25 mM NaH2P04, 2 mM MgSO4 and 10 mM Sucrose and had a pH of 7.4. After 30 min of OGD, cells were returned to normoxic conditions containing 21% O2 and 5% CO2. Control cells remained in normoxic conditions throughout. After 24 h cells were stained live with Hoechst 33258 and cell death assessed as described above.
Computational modeling
We modeled the AMPK-dependent FOXO3 activation by translating the reaction networks shown in Figure 5a into Ordinary Differential Equations. As model input, different activation profiles of AMPK (pAMPK) were resembled by a Gaussian curve with a maximum of 270 nM at a reference time-point and full-width-half-maxima between 0 and 150 min to mimic transient and prolonged activation. In a first activation step, phosphorylated AMPK (pAMPK) was assumed to inhibit mTOR and AKT activity, leading to dephosphorylation of FOXO3 (FOXO3dephos). In a second activation step (Figure 5a (2)), pAMPK directly phosphorylated FOXO3dephos to a fraction (FOXO3AMPK) assumed to be capable of inducing bim transcription. The reaction network is depicted in Supplementary Table 1. Protein–protein interactions, including all phosphorylation and dephosphorylation events, were modeled by mass action kinetics, whereas a Hill kinetic was assumed for bim transcription. First-order degradation kinetics were assumed for dephosphorylated proteins. Phosphorylated protein fractions were assumed to recover to a steady-state level. The complete Matlab code is available by request from the authors.
Statistical analysis
Data are expressed as mean±S.D. Differences among groups were analyzed by one-way ANOVA followed by Tukey test. Comparison between two groups was performed with the t test. P<0.05 was considered significant.
Acknowledgments
This study was supported by Marie Curie IEF (PIEF-GA-2009-237765), Science Foundation Ireland (08/ IN1/ 1949), and the Health Research Board in Ireland (PHD/2007/11). We thank Dr. Hans Georg Koenig for discussions and support, Ina Woods and Sarah Cannon for excellent technical assistance, and Andreas Strasser (WEHI, Melbourne, Australia) for bim-deficient mice.
Glossary
- AKT-CA
constitutively active mutant of AKT
- AMPK-CA
constitutively active mutant of AMPK
- CC
compound C
- CFL
coherent feed-forward loop
- CGNs
cerebellar granule neurons
- 6 × DBE FOXO3 promoter
reporter luciferase plasmid with six copies of the FOXO family protein-binding element
- DN-FOXO3
dominant-negative FOXO3
- FOXO3-6A
construct with FOXO3 sequence mutated at the AMPK phosphorylation sites
- FOXO3-nuclear
construct with FOXO3 sequence mutated at the AKT phosphorylation sites
- GLY
glycine
- GLUT
glutamate
- OGD
oxygen/glucose deprivation
- PI
propidium iodide
- RLUs
relative luciferase counts
The authors declare no conflict of interest.
Footnotes
Supplementary Information accompanies the paper on Cell Death and Differentiation website (http://www.nature.com/cdd)
Edited by JM Hardwick
Supplementary Material
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