Skip to main content
Indian Journal of Microbiology logoLink to Indian Journal of Microbiology
. 2010 Jan 7;49(4):352–357. doi: 10.1007/s12088-009-0062-5

On the origin of influenza A hemagglutinin

Derek Gatherer 1,
PMCID: PMC3450198  PMID: 23100797

Abstract

Recent advances in phylogenetic methods have produced some reassessments of the ages of the most recent common ancestor of hemagglutinin proteins in known strains of influenza A. This paper applies Bayesian phylogenetic analysis implemented in BEAST to date the nodes on the influenza A hemagglutinin tree. The most recent common ancestor (MRCA) of influenza A hemagglutinin proteins is located with 95% confidence between 517 and 1497 of the Common Era (AD), with the center of the probability distribution at 1056 AD. The implications of this revised dating for both historical and current epidemiology are discussed. Influenza A can be seen as an emerging disease of mediaeval and early modern times.

Keywords: Influenza A, Hemagglutinin, H1N1

Full Text

The Full Text of this article is available as a PDF (185.0 KB).

References

  • 1.Altschuler E.L., Kariuki Y.M., Jobanputra A. Extant blood samples to deduce the strains of the 1890 and possibly earlier pandemic influenzas. Medi Hypotheses. 2009;73:846–848. doi: 10.1016/j.mehy.2009.04.019. [DOI] [PubMed] [Google Scholar]
  • 2.Potter C.W. A history of influenza. J Appl Microbiol. 2001;91:572–579. doi: 10.1046/j.1365-2672.2001.01492.x. [DOI] [PubMed] [Google Scholar]
  • 3.Fraser C., Donnelly C.A., Cauchemez S., Hanage W.P., Kerkhove M.D., Hollingsworth T.D., Griffin J., Baggaley R.F., Jenkins H.E., Lyons E.J., Jombart T., Hinsley W.R., Grassly N.C., Balloux F., Ghani A.C., Ferguson N.M., Rambaut A., Pybus O.G., Lopez-Gatell H., Alpuche-Aranda C.M., Chapela I.B., Zavala E.P., Guevara D.M., Checchi F., Garcia E., Hugonnet S., Roth C. Pandemic potential of a strain of influenza A (H1N1): early findings. Science. 2009;324:1557–1561. doi: 10.1126/science.1176062. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4.Dawood F.S., Jain S., Finelli L., Shaw M.W., Lindstrom S., Garten R.J., Gubareva L.V., Xu X., Bridges C.B., Uyeki T.M. Emergence of a novel swine-origin influenza A (H1N1) virus in humans. N Engl J Med. 2009;360:2605–2615. doi: 10.1056/NEJMoa0903810. [DOI] [PubMed] [Google Scholar]
  • 5.Gatherer D. The 2009 H1N1 influenza outbreak in its historical context. J Clin Virol. 2009;45:174–178. doi: 10.1016/j.jcv.2009.06.004. [DOI] [PubMed] [Google Scholar]
  • 6.Saitou N., Nei M. Polymorphism and evolution of influenza A virus genes. Mol Biol Evol. 1986;3:57–74. doi: 10.1093/oxfordjournals.molbev.a040381. [DOI] [PubMed] [Google Scholar]
  • 7.Suzuki Y., Nei M. Origin and evolution of influenza virus hemagglutinin genes. Mol Biol Evol. 2002;19:501–509. doi: 10.1093/oxfordjournals.molbev.a004105. [DOI] [PubMed] [Google Scholar]
  • 8.Webster R.G. Influenza: an emerging disease. Emerg Infect Dis. 1998;4:436–441. doi: 10.3201/eid0403.980325. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 9.Webster R.G., Wright S.M., Castrucci M.R., Bean W.J., Kawaoka Y. Influenza—a model of an emerging virus disease. Intervirology. 1993;35:16–25. doi: 10.1159/000150292. [DOI] [PubMed] [Google Scholar]
  • 10.Meissner H.C. Influenza: emerging control of an old disease. Pediatr Emerg Care. 2001;17:465–470. doi: 10.1097/00006565-200112000-00019. [DOI] [PubMed] [Google Scholar]
  • 11.O’Brien J.D., She Z.S., Suchard M.A. Dating the time of viral subtype divergence. BMC Evol Biol. 2008;8:172. doi: 10.1186/1471-2148-8-172. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12.Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol. 2007;7:214. doi: 10.1186/1471-2148-7-214. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13.Drummond A.J., Ho S.Y., Phillips M.J., Rambaut A. Relaxed phylogenetics and dating with confidence. PLoS Biol. 2006;4:e88. doi: 10.1371/journal.pbio.0040088. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 14.Katoh K., Kuma K., Toh H., Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 2005;33:511–518. doi: 10.1093/nar/gki198. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15.Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution. 2007;24:1596–1599. doi: 10.1093/molbev/msm092. [DOI] [PubMed] [Google Scholar]
  • 16.Berman H., Westbrook J., Feng Z., Gilliland G., Bhat T., Weissig H., Shindyalov I., Bourne P. The Protein Data Bank. Nucl Acids Res. 2000;28:235–242. doi: 10.1093/nar/28.1.235. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17.Zuckerkandl E., Pauling L. Evolutionary divergence and convergence in proteins. In: Bryson V., Vogel H., editors. Evolving Genes and Proteins. New York: Academic Press; 1965. pp. 97–166. [Google Scholar]
  • 18.Smith G.J., Bahl J., Vijaykrishna D., Zhang J., Poon L.L., Chen H., Webster R.G., Peiris J.S., Guan Y. Dating the emergence of pandemic influenza viruses. Proc Natl Acad Sci U S A. 2009;106:11709–11712. doi: 10.1073/pnas.0904991106. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 19.McNeill W.H. Plagues and Peoples. Oxford: Basil Blackwell; 1977. [Google Scholar]
  • 20.McSweegan E. Anthrax and the etiology of the English sweating sickness. Med Hypotheses. 2004;62:155–157. doi: 10.1016/S0306-9877(03)00303-7. [DOI] [PubMed] [Google Scholar]
  • 21.Hunter P.R. The English sweating sickness, with particular reference to the 1551 outbreak in Chester. Rev Infect Dis. 1991;13:303–306. doi: 10.1093/clinids/13.2.303. [DOI] [PubMed] [Google Scholar]
  • 22.Bridson E. The English ’sweate’ (Sudor Anglicus) and hantavirus pulmonary syndrome. Br J Biomed Sci. 2001;58:1–6. [PubMed] [Google Scholar]
  • 23.Altschuler E.L., Kariuki Y.M. Was the Justinian Plague caused by the 1918 flu virus? Med Hypotheses. 2009;72:234. doi: 10.1016/j.mehy.2008.09.014. [DOI] [PubMed] [Google Scholar]
  • 24.Altschuler E.L., Kariuki Y.M. Did the 1918 flu virus cause the Black Death? Med Hypotheses. 2008;71:986–987. doi: 10.1016/j.mehy.2008.07.011. [DOI] [PubMed] [Google Scholar]
  • 25.Wollenberg K., Arnold J., Avise J.C. Recognizing the forest for the trees: testing temporal patterns of cladogenesis using a null model of stochastic diversification. Mol Biol Evol. 1996;13:833–849. doi: 10.1093/oxfordjournals.molbev.a025644. [DOI] [PubMed] [Google Scholar]
  • 26.Hay A.J., Gregory V., Douglas A.R., Lin Y.P. The evolution of human influenza viruses. Philos Trans R Soc Lond B Biol Sci. 2001;356:1861–1870. doi: 10.1098/rstb.2001.0999. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 27.Robock A. The “Little Ice Age”: Northern Hemisphere average observations and model calculations. Science. 1979;206:1402–1404. doi: 10.1126/science.206.4425.1402. [DOI] [PubMed] [Google Scholar]

Articles from Indian Journal of Microbiology are provided here courtesy of Springer

RESOURCES