Abstract
The var1 locus of yeast mitochondrial DNA encodes a protein of the small mitochondrial ribosome subunit, denoted var1 protein. The size of var1 protein was previously shown to exhibit a strain-dependent polymorphism, determined by various combinations of at least three genetic elements. We report here that the var1 gene is itself polymorphic and that the six forms of this gene examined here differ by various combinations of three in-frame insertions into the coding region of the smallest allele. These insertions, which appear to be the molecular basis for the genetic elements, could increase the size of var1 protein by 8, 10, 16, 24, or 26 amino acid residues, accounting for the observed protein polymorphisms. Furthermore, we have characterized three additional sources of sequence variation located outside of the coding region but within major transcripts of the var1 gene.
Full text
PDF




Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Baldacci G., de Zamaroczy M., Bernardi G. Excision sites in the GC clusters of the mitochondrial genome of yeast. FEBS Lett. 1980 Jun 2;114(2):234–236. doi: 10.1016/0014-5793(80)81122-7. [DOI] [PubMed] [Google Scholar]
- Bonitz S. G., Tzagoloff A. Assembly of the mitochondrial membrane system. Sequences of yeast mitochondrial tRNA genes. J Biol Chem. 1980 Oct 10;255(19):9075–9081. [PubMed] [Google Scholar]
- Bos J. L., Heyting C., Borst P., Arnberg A. C., Van Bruggen E. F. An insert in the single gene for the large ribosomal RNA in yeast mitochondrial DNA. Nature. 1978 Sep 28;275(5678):336–338. doi: 10.1038/275336a0. [DOI] [PubMed] [Google Scholar]
- Coen D., Deutsch J., Netter P., Petrochilo E., Slonimski P. P. Mitochondrial genetics. I. Methodology and phenomenology. Symp Soc Exp Biol. 1970;24:449–496. [PubMed] [Google Scholar]
- Douglas M. G., Butow R. A. Variant forms of mitochondrial translation products in yeast: evidence for location of determinants on mitochondrial DNA. Proc Natl Acad Sci U S A. 1976 Apr;73(4):1083–1086. doi: 10.1073/pnas.73.4.1083. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dujon B. Sequence of the intron and flanking exons of the mitochondrial 21S rRNA gene of yeast strains having different alleles at the omega and rib-1 loci. Cell. 1980 May;20(1):185–197. doi: 10.1016/0092-8674(80)90246-9. [DOI] [PubMed] [Google Scholar]
- Farrelly F., Zassenhaus H. P., Butow R. A. Characterization of transcripts from the Var1 region on mitochondrial DNA of Saccharomyces cerevisiae. J Biol Chem. 1982 Jun 10;257(11):6581–6587. [PubMed] [Google Scholar]
- Faye G., Dennebouy N., Kujawa C., Jacq C. Inserted sequence in the mitochondrial 23S ribosomal RNA gene of the yeast Saccharomyces cerevisiae. Mol Gen Genet. 1979 Jan 5;168(1):101–109. doi: 10.1007/BF00267939. [DOI] [PubMed] [Google Scholar]
- Fonty G., Goursot R., Wilkie D., Bernardi G. The mitochondrial genome of wild-type yeast cells. VII. Recombination in crosses. J Mol Biol. 1978 Feb 25;119(2):213–235. doi: 10.1016/0022-2836(78)90435-7. [DOI] [PubMed] [Google Scholar]
- Gage L. P., Manning R. F. Internal structure of the silk fibroin gene of Bombyx mori. I The fibroin gene consists of a homogeneous alternating array of repetitious crystalline and amorphous coding sequences. J Biol Chem. 1980 Oct 10;255(19):9444–9450. [PubMed] [Google Scholar]
- Gaillard C., Strauss F., Bernardi G. Excision sequences in the mitochondrial genome of yeast. Nature. 1980 Jan 10;283(5743):218–220. doi: 10.1038/283218a0. [DOI] [PubMed] [Google Scholar]
- Groot G. S., Mason T. L., Van Harten-Loosbroek N. Var1 is associated with the small ribosomal subunit of mitochondrial ribosomes in yeast. Mol Gen Genet. 1979 Jul 24;174(3):339–342. doi: 10.1007/BF00267808. [DOI] [PubMed] [Google Scholar]
- Hudspeth M. E., Ainley W. M., Shumard D. S., Butow R. A., Grossman L. I. Location and structure of the var1 gene on yeast mitochondrial DNA: nucleotide sequence of the 40.0 allele. Cell. 1982 Sep;30(2):617–626. doi: 10.1016/0092-8674(82)90258-6. [DOI] [PubMed] [Google Scholar]
- Hudspeth M. E., Shumard D. S., Tatti K. M., Grossman L. I. Rapid purification of yeast mitochondrial DNA in high yield. Biochim Biophys Acta. 1980 Dec 11;610(2):221–228. doi: 10.1016/0005-2787(80)90003-9. [DOI] [PubMed] [Google Scholar]
- Macino G., Tzagoloff A. Assembly of the mitochondrial membrane system. The DNA sequence of a mitochondrial ATPase gene in Saccharomyces cerevisiae. J Biol Chem. 1979 Jun 10;254(11):4617–4623. [PubMed] [Google Scholar]
- Manning R. F., Gage L. P. Internal structure of the silk fibroin gene of Bombyx mori. II. Remarkable polymorphism of the organization of crystalline and amorphous coding sequences. J Biol Chem. 1980 Oct 10;255(19):9451–9457. [PubMed] [Google Scholar]
- Maxam A. M., Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 1980;65(1):499–560. doi: 10.1016/s0076-6879(80)65059-9. [DOI] [PubMed] [Google Scholar]
- Muskavitch M. A., Hogness D. S. Molecular analysis of a gene in a developmentally regulated puff of Drosophila melanogaster. Proc Natl Acad Sci U S A. 1980 Dec;77(12):7362–7366. doi: 10.1073/pnas.77.12.7362. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nobrega F. G., Tzagoloff A. Assembly of the mitochondrial membrane system. DNA sequence and organization of the cytochrome b gene in Saccharomyces cerevisiae D273-10B. J Biol Chem. 1980 Oct 25;255(20):9828–9837. [PubMed] [Google Scholar]
- Prunell A., Bernardi G. The mitochondrial genome of wild-type yeast cells. VI. Genome organization. J Mol Biol. 1977 Feb 15;110(1):53–74. doi: 10.1016/s0022-2836(77)80098-3. [DOI] [PubMed] [Google Scholar]
- Sor F., Fukuhara H. Complete DNA sequence coding for the large ribosomal RNA of yeast mitochondria. Nucleic Acids Res. 1983 Jan 25;11(2):339–348. doi: 10.1093/nar/11.2.339. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sor F., Fukuhara H. Nature of an inserted sequence in the mitochondrial gene coding for the 15S ribosomal RNA of yeast. Nucleic Acids Res. 1982 Mar 11;10(5):1625–1633. doi: 10.1093/nar/10.5.1625. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Strausberg R. L., Butow R. A. Gene conversion at the var1 locus on yeast mitochondrial DNA. Proc Natl Acad Sci U S A. 1981 Jan;78(1):494–498. doi: 10.1073/pnas.78.1.494. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Strausberg R. L., Vincent R. D., Perlman P. S., Butow R. A. Asymmetric gene conversion at inserted segments on yeast mitochondrial DNA. Nature. 1978 Dec 7;276(5688):577–583. doi: 10.1038/276577a0. [DOI] [PubMed] [Google Scholar]
- Terpstra P., Butow R. A. The role of var1 in the assembly of yeast mitochondrial ribosomes. J Biol Chem. 1979 Dec 25;254(24):12662–12669. [PubMed] [Google Scholar]
- Terpstra P., Zanders E., Butow R. A. The association of var1 with the 38 S mitochondrial ribosomal subunit in yeast. J Biol Chem. 1979 Dec 25;254(24):12653–12661. [PubMed] [Google Scholar]
- Zassenhaus H. P., Farrelly F., Hudspeth M. E., Grossman L. I., Butow R. A. Transcriptional analysis of the Saccharomyces cerevisiae mitochondrial var1 gene: anomalous hybridization of RNA from AT-rich regions. Mol Cell Biol. 1983 Sep;3(9):1615–1624. doi: 10.1128/mcb.3.9.1615. [DOI] [PMC free article] [PubMed] [Google Scholar]