Table 1.
SNPs outside of chromosome 6 having p-values less than 10−4 from overall tests with or without controls.
| SNP | Chrom | Location | CSP(AS) | CSP(ATD) | CSP(MS) | CSP(BC) | Overall χ2 test with controls | Overall χ2 test without controls |
|---|---|---|---|---|---|---|---|---|
| RS7522061 | 1 | 154481463 | 8.49E-02 | 1.57E-04 | 2.40E-01 | 8.20E-01 | 6.14E-05 | 4.66E-05 |
| 2RS278981 | 4 | 40268938 | 1.72E-01 | 1.89E-02 | 4.58E-02 | 7.84E-02 | 3.68E-06 | 6.79E-07 |
| RS27044* | 5 | 96144608 | 7.88E-07 | 7.75E-01 | 2.23E-01 | 1.00E+00 | 2.99E-06 | 1.44E-05 |
| RS17482078* | 5 | 96144622 | 7.93E-06 | 3.87E-01 | 2.62E-01 | 1.82E-01 | 2.01E-05 | 1.17E-05 |
| RS10050860* | 5 | 96147966 | 1.91E-06 | 5.03E-01 | 1.93E-01 | 1.98E-01 | 8.47E-06 | 6.25E-06 |
| RS30187* | 5 | 96150086 | 1.23E-06 | 1.78E-01 | 6.68E-02 | 1.00E+00 | 1.88E-06 | 6.97E-06 |
| RS2287987* | 5 | 96155291 | 2.18E-06 | 4.08E-01 | 2.65E-01 | 2.13E-01 | 1.10E-05 | 6.99E-06 |
| RS11953798 | 5 | 177415724 | 1.66E-03 | 6.40E-01 | 2.94E-01 | 7.80E-01 | 4.58E-05 | 1.08E-03 |
| RS3824419 | 9 | 1046728 | 8.69E-01 | 4.62E-01 | 1.94E-01 | 1.58E-02 | 3.52E-04 | 6.96E-05 |
| RS727913 | 9 | 122457288 | 1.00E-02 | 9.97E-01 | 6.91E-03 | 2.16E-01 | 9.52E-06 | 1.89E-05 |
| RS1935 | 10 | 64597829 | 1.04E-02 | 1.51E-01 | 8.62E-01 | 1.44E-02 | 3.31E-04 | 7.26E-05 |
| RS7302230* | 12 | 7179699 | 3.43E-04 | 4.26E-01 | 3.44E-01 | 4.84E-01 | 1.92E-04 | 8.44E-05 |
*
Confirmed by the original study.
CSP: chi-square partition method; AS: autoimmune diseases; AITD: autoimmune thyroid disease; MS: multiple sclerosis; BC: breast cancer.