Abstract
Background
The formation and/or maturation of adult organs in vertebrates often takes place during postembryonic development, a period around birth in mammals when thyroid hormone (T3) levels are high. The T3-dependent anuran metamorphosis serves as a model to study postembryonic development. Studies on the remodeling of the intestine during Xenopus (X.) laevis metamorphosis have shown that the development of the adult intestine involves de novo formation of adult stem cells in a process controlled by T3. On the other hand, X. tropicalis, highly related to X. laevis, offers a number of advantages for studying developmental mechanisms, especially at genome-wide level, over X. laevis, largely due to its shorter life cycle and sequenced genome. To establish X. tropicalis intestinal metamorphosis as a model for adult organogenesis, we analyzed the morphological and cytological changes in X. tropicalis intestine during metamorphosis.
Methodology/Principal Findings
We observed that in X. tropicalis, the premetamorphic intestine was made of mainly a monolayer of larval epithelial cells surrounded by little connective tissue except in the single epithelial fold, the typhlosole. During metamorphosis, the larval epithelium degenerates and adult epithelium develops to form a multi-folded structure with elaborate connective tissue and muscles. Interestingly, typhlosole, which is likely critical for adult epithelial development, is present along the entire length of the small intestine in premetamorphic tadpoles, in contrast to X. laevis, where it is present only in the anterior 1/3. T3-treatment induces intestinal remodeling, including the shortening of the intestine and the typhlosole, just like in X. laevis.
Conclusions/Significance
Our observations indicate that the intestine undergoes similar metamorphic changes in X. laevis and X. tropicalis, making it possible to use the large amount of information available on X. laevis intestinal metamorphosis and the genome sequence information and genetic advantages of X. tropicalis to dissect the pathways governing adult intestinal development.
Introduction
The development of many vertebrate organs takes place in two steps, the formation of an immature but functional organ during embryogenesis followed by the maturation into the adult form. This second step often occurs during the so-called postembryonic development, a period around birth in mammals when plasma thyroid hormone (T3) concentrations are high [1] and involves the formation of organ/tissue-specific adult stem cells, such as the adult intestinal and hematopoietic stem cells [2]–[4]. The intestine is one such organ that has been well studied due to the continuous self-renewal of the intestinal epithelium, which is responsible for the food processing and nutrient absorption, throughout adult life in vertebrates [5]–[8]. This self-renewal is accomplished through stem cell divisions in the crypt, followed by their differentiation as the cells migrate along the crypt-villus axis and eventual death of the differentiated cells near the tip of the villus.
The establishment of the self-renewal system in the intestine takes place during postembryonic development in vertebrates. For example, in mouse, the intestinal epithelium lacks crypts at birth and the villus-crypt axis is formed in the first few weeks after birth as the plasma T3 concentration rises to a peak [2], [9], [10]. In amphibians such as Xenopus (X.) laevis, the transition from the tadpole/larval intestine to the adult form occurs during metamorphosis [2], [3], [8], [11], a process that shares many similarities with postembryonic development in mammals, including the requirement for high levels of T3 [1], [12]. The ability to easily manipulate amphibian metamorphosis has enabled extensive morphological, cellular, molecular, and genetic studies of intestinal remodeling during X. laevis metamorphosis. The tadpole intestine is made of mostly a monolayer of larval epithelial cells, with thin layers of connective tissue and muscles [11]. During metamorphosis, the larval epithelial cells undergo apoptosis and concurrently, adult epithelial stem/progenitor cells are formed de novo and rapidly proliferate [3]. Toward the end of metamorphosis, the adult epithelial cells differentiate to establish a trough-crest axis of epithelial folds, resembling the crypt-villus axis in the adult mammalian intestine, [2], [11].
Like other processes during metamorphosis, intestinal remodeling is totally dependent on T3 and can even be induced in cultures of isolated premetamorphic intestine upon T3 treatment [11]. Making use of these properties, we and others have shown that the adult epithelial stem cells are derived from the larval epithelium, likely through dedifferentiation of larval epithelial cells [13]–[15]. We have further shown that T3 can induce the formation of the progenitors or precursors of the adult epithelial stem cells tissue-autonomously while the formation of the stem cells also require the action of T3 in the surrounding tissues, most likely the underlying connective tissue [16]. In addition, many genes that are regulated during intestinal remodeling have also been identified by using microarray analyses and subtractive screening [17]–[20]. However, how these genes are regulated by T3 and what roles they play during adult stem cells development are largely unknown. This is in part due to some limitations of the X. laevis model. For example, X. laevis has a pseudo-tetraploid genome that has not been sequenced, making it difficult to carry out genome-wide studies such as ChIP (chromatin immunoprecipitation)-seq and ChIP-on-chip assays to study gene regulation mechanisms during development. In addition, it has a lengthy developmental cycle, which makes it difficult to study gene function during metamorphosis.
Using Xenopus tropicalis, which is highly related to X. laevis, can overcome these limitations [21], [22]. Its diploid genome has been sequenced and its developmental cycle is twice as fast as that of X. laevis. Furthermore, we and others have shown that the expression of T3 receptors (TRs) and 9-cis retinoic acid receptors (RXR), which form heterodimers to mediate the in vivo effects of T3 during X. laevis development [23]–[27], is similarly regulated during development of X. tropicalis and X. laevis. In addition, X. tropicalis TR/RXR heterodimers have expectedly similar transcriptional activities as X. laevis TR/RXR heterodimers [28]. Furthermore, ChIP analyses have shown that, as in X. laevis, TR is bound to two well studied TR target genes and induces histone modifications at the corresponding promoters in X. tropicalis, again resembling that in X. laevis [29], [30]. Thus, it is expected that T3 induces metamorphosis in X. tropicalis via similar molecular mechanisms as in X. laevis.
To investigate the possibility of using X. tropicalis as a model to study adult intestinal stem cell development, we have analyzed the morphological and cytological changes of the intestine during metamorphosis in X. tropicalis. Our results indicate that the metamorphic transformations in the intestine are conserved between X. tropicalis and X. laevis. We have also discovered a distinct difference, that is, the presence of the typhlosole throughout premetamorphic small intestine in X. tropicalis while only in the anterior 1/3 of the small intestine in X. laevis, suggesting possibly distinct regulation of the stem cell development along the anterior-posterior axis of the intestine.
Experimental Procedures
Animals
Xenopus laevis and Xenopus tropicalis tadpoles were either purchased from NASCO (Fort Atkinson, WI) or generated and reared in the laboratory. All experiments involving animals were performed following procedures approved by the Animal Use and Care Committee of Eunice Kennedy Shriver National Institute of Child Health and Human Development.
T3 treatment and Methyl Green Pyronin Y (MGPY) Staining
Premetamorphic tadpoles at stage 54 were treated with 5 or 10 nM T3 at 18°C (Xenopus laevis tadpoles) or 25°C (Xenopus tropicalis) for indicated number of days. The gastrointestinal tract from Xenopus laevis and tropicalis tadpoles at different stages with or without T3-treatment were isolated and fixed in 4% paraformaldehyde overnight. They were then embedded in OCT compound and cryosectioned. The sections were frozen until further analysis.
For staining with MGPY, a mixture of methyl green, which binds strongly to DNA, and pyronin Y, which binds strongly to RNA [19], [25], [31], the slides were rinsed three times for 5 minutes each in 1X PBS, incubated in MGPY solution (Muto Pure Chemicals, Japan) for 15 min at room temperature, washed for 1 minute with 1X PBS, then rinsed in H2O, and finally dried on a slide warmer. The slides were subsequently incubated in 2 changes of Histoclear for 5 minutes each followed by mounting with a coverslip. The intestinal sections were analyzed with a light microscope and the imagines were recorded with a cool-coiled digital camera.
Terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) assay was performed essentially as previously described to label the apoptotic cell with Biotin-16-dUTP (Roche, IN) [32]. The Biotin-16-dUTP labeled apoptotic cells were visualized with Texas Red-Streptavidin staining (1∶200). The sections were counterstained with DAPI, washed with 1X PBS 3 times for 1 minute each and mounted with VECTASHIELD (VECTOR, Burlingame, CA). The intestinal sections were analyzed with a fluorescent microscope and the imagines were recorded with a cool-coiled digital camera at red fluorescent channel for Texas Red signal as well as blue fluorescent channel for DAPI, respectively, and merged to show the location of the apoptotic cells in the intestinal sections.
Intestinal Measurements
The entire tadpole intestine was dissected intact from tadpoles with or without T3 treatment and analyzed under a dissecting microscope to identify the boundary of the typhlosole in the intestine. The length of the entire intestine and the length of the typhlosole in the intestine were measured with a ruler. At least 3 tadpoles at each time point were measured. The mean and stand error were determined and presented.
Quantitative reverse transcription-polymerase chain reactions (qRT-PCR)
Total RNA were extracted from intestines of X. tropicalis tadpoles during natural metamorphosis with TRIzol Reagent (Invitrogen, NY) and made DNA-free with DNase I treatment. The total RNA was reverse transcribed into cDNA as described previously [33] and subjected to qPCR analysis by SYBR® Green PCR (ABI, Foster City, CA). The primers used were 5¢-TTGCCAAGGTTGCTTTCCG-3′ and 5¢-GTTTCAGGATTGTGGGAGATAACG-3′ for the control gene rpl8 [34], 5¢-CGAGCCGGAGGCACAGACAAAG-3′ and 5¢-GCAGGTAGAAGGGTGAGGAGATGC-3′ for stromelysin 3 (ST3), as well as 5¢-CCATGGCCTTTGATGGAACC-3′ and 5¢-ATCTTCAGGTTGTCGTGTGCT-3′ for intestinal fatty acid binding protein gene (IFABP), respectively. The qPCR reactions were reproducibly repeated at least twice with three duplicates for each stage. The values for ST3 and IFABP were normalized against that of rpl8 and presented as means with standard deviations.
Results
The Metamorphosis of the Small Intestine in X. tropicalis Involves Degeneration of the Larval Epithelium Followed by the Formation of the New Adult Epithelium
The gastrointestinal tract in a premetamorphic X. tropicalis tadpole consists of the esophagus, stomach, small and large intestine as in other vertebrates (Fig. 1). Like in premetamorphic X. laevis tadpoles, the small intestine is very long and is the largest part of the gastrointestinal tract.
To examine the changes in the intestine during metamorphosis, cross-sections of the anterior small intestine from X. tropicalis tadpoles at different stages of metamorphosis were stained with MGPY, which distinguishes the proliferating adult epithelial cells from the dying larval epithelial cells based on their RNA content [19], [25], [31]. As shown in Fig. 2, at premetamorphic stage 54, the luminal side of the intestine was a monolayer of larval epithelial cells that was stained strongly and uniformly by MGPY (Fig. 2A/D). The epithelium was surrounded by thin layers of connective tissue and outer muscles. There was a single epithelial fold, the typhlosole, where connective tissue was abundant. This structure remained largely unchanged through the onset of metamorphic climax (stage 58, Fig. 2B/E). By the climax of metamorphosis (stages 60–64), the intestine had undergone extensive changes. At stage 61 (Fig. 2C/F), the larval epithelium became very weakly stained by MGPY due to the degeneration of the larval cells, leading to reduced RNA in the cells; at the same time the clusters of newly formed adult epithelial progenitor/stem cells were strongly stained, just like those observed in X. laevis [19], [25], [31]. By stage 62, the adult epithelium began to fold and the typhlosole was no longer observable (Fig. 2G/J). From stage 64–66, the epithelium developed into the multiply folded adult structure (Fig. 2H/K, I/L). All these mimic those during X. laevis metamorphosis.
T3 Induces Metamorphic Changes in the Small Intestine in X. tropicalis Premetamorphic Tadpoles
T3 treatment of premetamorphic X. laevis tadpoles is known to induce similar changes in the intestine as during natural metamorphosis. To investigate T3-induced changes in the intestine of X. tropicalis tadpoles, we treated stage 54 tadpoles with T3 for 0–5 days and the intestine was isolated and cross-sections of the anterior small intestine were stained with MGPY. As shown in Fig. 3, after 0 or 1 day of T3 treatment, the intestinal epithelium was stained uniformly and there were little connective tissue and muscles except in the typhlosole where the connective tissue was abundant (Fig. 3 A, B/E, F). After 3 days of treatment, most of the larval epithelium became weakly stained as the larval cells degenerated and clusters of newly formed adult cells were strongly stained (Fig. 3C/G), resembling the intestine at stage 61 (Fig. 2 D/H). After 5 days, most of the epithelium was stained well and adult epithelial folds began to form and the typhlosole was no longer recognizable (Fig. 4D/H), similarly to the intestine at stage 62 (Fig. 2 I/L). The connective tissue and muscles developed extensively by the end of the treatment. Thus, T3-induces intestinal remodeling mimics that during natural metamorphosis.
The Typhlosole is Present Along the Entire Length of the Small Intestine of Premetamorphic X. tropicalis Tadpoles
The typhlosole is an interesting and important structure of the intestine in premetamorphic X. laevis tadpoles [11], [35]. It is present along the anterior one third of the small intestine [36] and is the only location where the connective tissue is abundant (Fig. 4A). As shown above and in Fig. 4B, the anterior intestine of premetamorphic X. tropicalis tadpoles also had the typhlosole. Interestingly, when we examined the posterior part of the small intestine in premetamorphic X. tropicalis tadpoles, we were surprised to find that it too had the typhlosole (Fig. 4B). In fact, we observed that the typhlosole was present along the entire length of the small intestine in premetamorphic X. tropicalis tadpoles as diagramed in Fig. 4.
T3 Treatment of premetamorphic Tadpoles Leads to the Reduction in the Length of Both the Small Intestine and the Typhlosole
During metamorphosis, the small intestine reduces its length by as much as 90% in X. laevis and the T3 treatment also causes reduction in the length of the small intestine [11]. To compare how the length of the intestine and typhlosole changes in X. laevis and X. tropicalis, stage 54 premetamorphic tadpoles of both species were treated with 10 nM T3 for 0–6 days and the length of the intestine and typhlosole was measured. As shown in Fig. 5, the length of the intestine began to decrease after 3 or 5 days of T3 treatment in X. laevis or X. tropicalis tadpoles, respectively. The length of the typhlosole was the same as the small intestine up to 3 days of T3 treatment in X. tropicalis and after 4 days of treatment or longer, the typhlosole was no longer identifiable as the newly formed adult epithelial folds were no longer distinguishable from the typhlosole (Fig. 3D). In X. laevis, the length of the typhlosole were maintained at 1/3 of the length of the small intestine up to 4 days of T3 treatment and after 5 days of T3 treatment or longer, the typhlosole was no longer identifiable. Thus, T3 treatment induced similar changes in the lengths of the typhlosole and the small intestine in both X. laevis and X. tropicalis. The only difference between the two species in response to T3 was that the changes were faster in X. tropicalis than in X. laevis. While it is unknown if the different organizations of the typhlosole in the two species contribute to the their different response to T3, this might be due, at least in part, to the faster development of X. tropicalis tadpoles and/or the fact that X. tropicalis tadpoles need to be reared at higher temperature, thus responding to T3 faster.
T3 induces larval epithelial degeneration through apoptosis and gene regulation in the intestine of X. tropicalis tadpoles
X. laevis larval intestinal epithelium degenerates through apoptosis during both natural and T3-induced metamorphosis, accompanied by the changes in the expression of many genes [25], [26], [33]. To explore if X. tropicalis intestinal epithelium undergoes similar changes, we performed TUNEL assay on cryosections of intestines of stage 54 tadpoles (premetamorphic tadpoles), stage 61 tadpoles (climax of metamorphosis), and stage 54 tadpoles treated with T3 for 3 days, in the presence (Fig. 6A–C) or absence of TdT, the enzyme essential for TUNEL assay (Fig. 6D–F). The results showed that apoptotic cells were rarely detectable in the intestines of stage 54 tadpoles (Fig. 6A, a) but abundant in the intestinal epithelia of stage 61 tadpoles (Fig. 6B, b) and that of stage 54 tadpoles treated with T3 for 3 days (Fig. 6C, c), similar to those observed in X. laevis.
In addition, we examined the expression of two genes known to be regulated by T3 in X. laevis: stromelysin-3 (ST3), which encodes a matrix metalloproteinase and known to play a causative role during X. laevis intestinal epithelial apoptosis [33], [37], and intestinal fatty acid binding protein (IFABP), which is a differentiation marker down-regulated at the climax of metamorphosis in the X. laevis intestine [38], in the intestines during X. tropicalis metamorphosis (Fig. 7). Just like in X. laevis, ST3 was up-regulated to reach the highest level while IFABP was down-regulated to the lowest level at stage 61 (Fig.7), the climax of metamorphosis when larval epithelia were undergoing apoptosis (Fig.6B &b) and adult epithelial progenitor/stem cells were developing (Fig. 2C & F).
Discussion and Conclusion
Adult organ-specific stem cells are critical for organ homeostasis, tissue repair and regeneration. These stem cells are often developed during postembryonic vertebrate development, a period around birth in mammals when T3 levels are high. It has been difficult to study postembryonic development in mammals due to the nature of the in utero development. Anuran metamorphosis resembles the postembryonic development in mammals but occur independent of parental influence. It is totally dependent on T3 and can be easily manipulated by controlling the availability of T3 in the tadpoles. Studies on X. laevis metamorphosis have revealed extensive molecular mechanistic details on the regulation of this process by T3, including the role of T3 receptors and many genes that are regulated by T3 during metamorphosis [2], [39]. Of many changes during metamorphosis, intestinal remodeling offers a unique opportunity to study the development of the adult organ-specific stem cells [2], [40]. In X. laevis, this process involves the degeneration of the larval epithelium through apoptosis or programmed cell death [11]. Concurrently, the adult epithelial stem or progenitor cells develop de novo through dedifferentiation of some cells in the larval epithelium, followed by the proliferation and differentiation to form a multiply folded adult epithelium surrounded by elaborate connective tissue and muscles, resembling that in adult mammals. Interesting, this transition appears to be conserved in mammals as mouse adult intestinal stem cells are also formed during postembryonic development in a process that involves similar regulation by T3 [40]–[43]. Thus X. laevis intestinal remodeling offers an opportunity to manipulate and study adult stem cell development in vertebrates. On the other hand, its lengthy developmental cycle and its yet-to-be sequenced pseudo-tetraploid genome make it difficult to study gene function and genome-wide analyses in X. laevis. Here our studies suggest that intestinal remodeling in X. tropicalis resembles that in X. laevis and thus offers an alternative model for studying intestinal development without the aforementioned drawbacks.
X. tropicalis is highly related to X. laevis but has a simple diploid genome that has been sequenced [21], [22]. It also has a shorter life cycle, requiring only half the time to reach sexual maturity from fertilization than that in X. laevis. This advantageous shorter life cycle coupled with its smaller body size makes the X. tropicalis a superior model for genetic and genome-wide functional studies. Importantly, our analyses here have shown that intestinal metamorphosis in X. tropicalis resembles that in X. laevis. Furthermore, our present work and limited earlier studies on T3 receptor (TR) function and regulation of T3 target genes have also demonstrated conserved function and mechanisms for TR during X. tropicalis metamorphosis [28]–[30], [44], [45]. Thus, one can combine the advantages of the X. tropicalis model with the wealth of cellular and molecular knowledge gained from studies on X. laevis intestinal metamorphosis in the past few decades to dissect the molecular pathways governing adult stem cell development during metamorphosis.
While the metamorphic changes in the intestine are similar between X. laevis and X. tropicalis, a major structure difference was observed between these two related species. A distinct feature of the premetamorphic X. laevis tadpole intestine is the presence of the typhlosole in the anterior 1/3 of the small intestine [36]. This is where the connective tissue is abundant in the tadpole intestine prior to metamorphosis. During metamorphosis, as adult epithelial folding occurs with the development of the connective tissue and muscles around the climax of metamorphosis (around stage 62), the typhlosole is no longer observable or distinguishable from the many newly formed epithelial folds. While the physiological significance of the typhlosole in premetamorphic tadpoles is unclear, in vitro organ culture studies suggest that it may play a role in the development of the adult intestinal stem cells. When fragments of the anterior small intestine with typhlosole were isolated from premetamorphic X. laevis tadpoles and cultured in vitro with T3, intestinal metamorphosis, including apoptosis of larval epithelial cells and development of the adult epithelium, took place [46]. On the other hand, when fragments of the small intestine lacking typhlosole were isolated from premetamorphic X. laevis tadpoles and cultured in vitro with T3, only larval epithelial degeneration was observed [47], suggesting that the connective tissue rich typhlosole is critical for adult epithelium development. Consistently, we have recently shown that expression of a constitutive active TR in the larval epithelium alone (resembling T3 treatment of only the epithelium) in typhlosole-containing organ cultures led to larval epithelial cell death and adult epithelial progenitor/precursor formation, however, such cells failed to express intestinal stem cell markers or develop into differentiated adult epithelium [16]. In contrast, when the constitutive active TR was expressed in all tissues of the intestinal fragment, which contained the typhlosole, in organ cultures, larval cell death, adult stem cell formation, and eventually adult epithelium development took place. These findings suggest that T3 action in the larval epithelium alone can induce the formation of adult progenitor/precursor cells while T3 action in the non-epithelium, most likely the connective tissue underlying the epithelium, is also required for these progenitors/precursors to become stem cells, presumably by forming or enabling the formation of the stem cell niche. Thus, it is interesting to speculate that the presence of the connective tissue-rich typhlosole along the entire length of the small intestine may facilitate the concurrent development of adult intestinal stem cells throughout the intestine during metamorphosis. It would be interesting to test this possibility in the future by using organ culture of intestine isolated from anterior as well as posterior small intestine of X. tropicalis premetamorphic tadpoles.
Funding Statement
This research was supported by the Intramural Research Program of National Institute of Child Health and Human Development, National Institutes of Health. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
References
- 1. Tata J R (1993) Gene expression during metamorphosis: an ideal model for post-embryonic development. Bioessays 15: 239–48. [DOI] [PubMed] [Google Scholar]
- 2. Shi Y B, Hasebe T, Fu L, Fujimoto K, Ishizuya-Oka A (2011) The development of the adult intestinal stem cells: Insights from studies on thyroid hormone-dependent amphibian metamorphosis. Cell Biosci 1: 30. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 3. Shi Y B (2011) The right journal for the right time - Cell & Bioscience. Cell Biosci 1: 1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4. Yuan J, Nguyen C K, Liu X, Kanellopoulou C, Muljo S A (2012) Lin28b reprograms adult bone marrow hematopoietic progenitors to mediate fetal-like lymphopoiesis. Science 335: 1195–200. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5. MacDonald W C, Trier J S, Everett N B (1964) Cell proliferation and migration in the stomach, duodenum, and rectum of man: Radioautographic studies. Gastroenterology 46: 405–17. [PubMed] [Google Scholar]
- 6.Toner P G, Carr K E, Wyburn G M. (1971) The Digestive System: An Ultrastructural Atlas and Review. Butterworth, London. [Google Scholar]
- 7. van der Flier L G, Clevers H (2009) Stem Cells, Self-Renewal, and Differentiation in the Intestinal Epithelium. Annu. Rev. Physiol. 71: 241–60. [DOI] [PubMed] [Google Scholar]
- 8. McAvoy J W, Dixon K E (1977) Cell proliferation and renewal in the small intestinal epithelium of metamorphosing and adult Xenopus laevis. J. Exp. Zool. 202: 129–138. [Google Scholar]
- 9. Al-Nafussi A I, Wright N A (1982) Cell kinetics in the mouse small intestine during immediate postnatal life. Virchows Arch B Cell Pathol Incl Mol Pathol 40: 51–62. [DOI] [PubMed] [Google Scholar]
- 10. Schmidt G H, Winton D J, Ponder B A (1988) Development of the pattern of cell renewal in the crypt-villus unit of chimaeric mouse small intestine. Development 103: 785–90. [DOI] [PubMed] [Google Scholar]
- 11. Shi Y-B, Ishizuya-Oka A (1996) Biphasic intestinal development in amphibians: Embryogensis and remodeling during metamorphosis. Current Topics in Develop. Biol. 32: 205–235. [DOI] [PubMed] [Google Scholar]
- 12.Shi Y-B. (1999) Amphibian Metamorphosis: From morphology to molecular biology. John Wiley & Sons, Inc., New York. [Google Scholar]
- 13. Ishizuya-Oka A, Hasebe T, Buchholz D R, Kajita M, Fu L, Shi Y B (2009) Origin of the adult intestinal stem cells induced by thyroid hormone in Xenopus laevis. Faseb J 23: 2568–75. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14. Schreiber A M, Cai L, Brown D D (2005) Remodeling of the intestine during metamorphosis of Xenopus laevis. Proc Natl Acad Sci U S A 102: 3720–5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15. Amano T, Noro N, Kawabata H, Kobayashi Y, Yoshizato K (1998) Metamorphosis-associated and region-specific expression of calbindin gene in the posterior intestinal epithelium of Xenopus laevis larva. Dev Growth Differ 40: 177–88. [DOI] [PubMed] [Google Scholar]
- 16. Hasebe T, Buchholz D R, Shi Y B, Ishizuya-Oka A (2011) Epithelial-connective tissue interactions induced by thyroid hormone receptor are essential for adult stem cell development in the Xenopus laevis intestine. Stem Cells 29: 154–61. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17. Amano T, Yoshizato K (1998) Isolation of genes involved in intestinal remodeling during anuran metamorphosis. Wound Repair Regen 6: 302–313. [DOI] [PubMed] [Google Scholar]
- 18. Heimeier R A, Das B, Buchholz D R, Fiorentino M, Shi Y B (2010) Studies on Xenopus laevis intestine reveal biological pathways underlying vertebrate gut adaptation from embryo to adult. Genome Biol 11: R55. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19. Buchholz D R, Heimeier R A, Das B, Washington T, Shi Y-B (2007) Pairing morphology with gene expression in thyroid hormone-induced intestinal remodeling and identification of a core set of TH-induced genes across tadpole tissues. Dev. Biol. 303: 576–590. [DOI] [PubMed] [Google Scholar]
- 20. Shi Y-B, Brown D D (1993) The earliest changes in gene expression in tadpole intestine induced by thyroid hormone. J. Biol. Chem. 268: 20312–20317. [PubMed] [Google Scholar]
- 21. Amaya E, Offield M F, Grainger R M (1998) Frog genetics: Xenopus tropicalis jumps into the future. Trends Genet 14: 253–5. [DOI] [PubMed] [Google Scholar]
- 22. Hellsten U, Harland R M, Gilchrist M J, Hendrix D, Jurka J, et al. (2010) The genome of the Western clawed frog Xenopus tropicalis. Science 328: 633–6. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23. Puzianowska-Kuznicka M, Damjanovski S, Shi Y-B (1997) Both thyroid Hormone and 9-cis Retinoic Acid receptors are Required to Efficiently mediate the Effects of Thyroid Hormone on Embryonic Development and Specific Gene Regulation in Xenopus laevis. Mol. And Cell Biol. 17: 4738–4749. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 24. Shi Y-B (2009) Dual functions of thyroid hormone receptors in vertebrate development: the roles of histone-modifying cofactor complexes. Thyroid 19: 987–999. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25. Buchholz D R, Tomita A, Fu L, Paul B D, Shi Y-B (2004) Transgenic analysis reveals that thyroid hormone receptor is sufficient to mediate the thyroid hormone signal in frog metamorphosis. Mol. Cell. Biol. 24: 9026–9037. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26. Buchholz D R, Hsia V S-C, Fu L, Shi Y-B (2003) A dominant negative thyroid hormone receptor blocks amphibian metamorphosis by retaining corepressors at target genes. Mol. Cell. Biol. 23: 6750–6758. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27. Schreiber A M, Das B, Huang H, Marsh-Armstrong N, Brown D D (2001) Diverse developmental programs of Xenopus laevis metamorphosis are inhibited by a dominant negative thyroid hormone receptor. PNAS 98: 10739–10744. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28. Wang X, Matsuda H, Shi Y-B (2008) Developmental regulation and function of thyroid hormone receptors and 9-cis retinoic acid receptors during Xenopus tropicalis metamorphosis. Endocrinology 149: 5610–5618. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 29. Bilesimo P, Jolivet P, Alfama G, Buisine N, Le Mevel S, et al. (2011) Specific Histone Lysine 4 Methylation Patterns Define TR-Binding Capacity and Differentiate Direct T3 Responses. Mol Endocrinol 25: 225–237. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30. Matsuura K, Fujimoto K, Fu L, Shi Y-B (2012) Liganded thyroid hormone receptor induces nucleosome removal and histone modifications to activate transcription during larval intestinal cell death and adult stem cell development. Endocrinology 153: 961–972. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31. Ishizuya-Oka A, Ueda S, Damjanovski S, Li Q, Liang V C, Shi Y-B (1997) Anteroposterior gradient of epithelial transformation during amphibian intestinal remodeling: immunohistochemical detection of intestinal fatty acid-binding protein. Dev Biol 192: 149–61. [DOI] [PubMed] [Google Scholar]
- 32. Damjanovski S, Ishizuya-Oka A, Shi Y B (1999) Spatial and temporal regulation of collagenases-3, -4, and stromelysin - 3 implicates distinct functions in apoptosis and tissue remodeling during frog metamorphosis. Cell Res 9: 91–105. [DOI] [PubMed] [Google Scholar]
- 33. Fu L, Ishizuya-Oka A, Buchholz D R, Amano T, Matsuda H, Shi Y B (2005) A causative role of stromelysin-3 in extracellular matrix remodeling and epithelial apoptosis during intestinal metamorphosis in Xenopus laevis. J Biol Chem 280: 27856–65. [DOI] [PubMed] [Google Scholar]
- 34. Shi Y-B, Liang V C-T (1994) Cloning and characterization of the ribosomal protein L8 gene from Xenopus laevis. Biochimica et Biophysica Acta. 1217: 227–228. [DOI] [PubMed] [Google Scholar]
- 35. Ishizuya-Oka A, Shimozawa A (1987) Development of the connective tissue in the digestive tract of the larval and metamorphosing Xenopus laevis. Anat Anz 164: 81–93. [PubMed] [Google Scholar]
- 36. Marshall J A, Dixon K E (1978) Cell specialization in the epithelium of the small intestine of feeding Xenopus laevis tadpoles. J Anat 126: 133–44. [PMC free article] [PubMed] [Google Scholar]
- 37. Fu L, Tomita A, Wang H, Buchholz D R, Shi Y-B (2006) Transcriptional regulation of the Xenopus laevis stromelysin-3 gene by thyroid hormone is mediated by a DNA element in the first intron. J. Biol. Chem. 281: 16870–8. [DOI] [PubMed] [Google Scholar]
- 38. Shi Y-B, Hayes W P (1994) Thyroid hormone-dependent regulation of the intestinal fatty acid-binding protein gene during amphibian metamorphosis. Dev. Biol. 161: 48–58. [DOI] [PubMed] [Google Scholar]
- 39. Shi Y-B, Ishizuya-Oka A (2001) Thyroid hormone regulation of apoptotic tissue remodeling: Implications from molecular analysis of amphibian metamorphosis. Progress in Nucleic Acid Research and Molecular Biology 65: 53–100. [DOI] [PubMed] [Google Scholar]
- 40. Ishizuya-Oka A, Shi Y B (2011) Evolutionary insights into postembryonic development of adult intestinal stem cells. Cell Biosci 1: 37. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 41. Matsuda H, Shi Y B (2010) An essential and evolutionarily conserved role of protein arginine methyltransferase 1 for adult intestinal stem cells during postembryonic development. Stem Cells 28: 2073–83. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 42. Muncan V, Heijmans J, Krasinski S D, Buller N V, Wildenberg M E, et al. (2011) Blimp1 regulates the transition of neonatal to adult intestinal epithelium. Nat Commun 2: 452. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 43. Harper J, Mould A, Andrews R M, Bikoff E K, Robertson E J (2011) The transcriptional repressor Blimp1/Prdm1 regulates postnatal reprogramming of intestinal enterocytes. Proc Natl Acad Sci U S A 108: 10585–90. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 44. Matsuura K, Fujimoto K, Das B, Fu L, Lu C D, Shi Y B (2012) Histone H3K79 methyltransferase Dot1L is directly activated by thyroid hormone receptor during Xenopus metamorphosis. Cell Biosci 2: 25. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 45.Fujimoto K, Matsuura K, Das B, Fu L, Shi Y B (2012) Direct Activation of Xenopus Iodotyrosine Deiodinase by Thyroid Hormone Receptor in the Remodeling Intestine during Amphibian Metamorphosis. Endocrinology. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 46. Ishizuya-Oka A, Shimozawa A (1991) Induction of metamorphosis by thyroid hormone in anuran small intestine cultured organotypically in vitro. In Vitro Cell Dev Biol 27A: 853–7. [DOI] [PubMed] [Google Scholar]
- 47. Ishizuya-Oka A, Shimozawa A (1992) Connective tissue is involved in adult epithelial development of the small intestine during anuran metamorphosis in vitro. Roux's Arch. Dev. Biol 201: 322–329. [DOI] [PubMed] [Google Scholar]