Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Sep 26;68(Pt 10):m1307. doi: 10.1107/S1600536812040056

Poly[[diaqua­(μ-4,4′-bipyridine N,N′-di­oxide-κ2 O:O′)(μ-terephthalato-κ2 O 1:O 4)cobalt(II)] 4,4′-bipyridine N,N′-dioxide monosolvate]

Xin Ge a, Shu-Yan Song a,*
PMCID: PMC3470175  PMID: 23125619

Abstract

In the title compound, {[Co(C8H4O4)(C10H8N2O2)(H2O)2]·C10H8N2O2}n, the CoII atom, lying on an inversion center, is hexa­coordinated in a distorted octa­hedral geometry defined by two O atoms from two terephthalate (tp) ligands, two O atoms from two 4,4′-bipyridine N,N′-dioxide (bpydo) ligands and two water mol­ecules. The coordinated tp and bpydo ligands and uncoordinated bpydo mol­ecule all have an inversion center. The CoII atoms are connected by the tp and bpydo ligands into a layer parallel to (111). In the crystal, O—H⋯O hydrogen bonds link the uncoordinated bpydo mol­ecules and the layers into a three-dimensional supra­molecular structure. Intra­layer O—H⋯O hydrogen bonds and π–π inter­actions [centroid-to-centroid distances = 3.6643 (13) and 3.8048 (13) Å] are also observed.

Related literature  

For the design of supra­molecular structures containing metal ions and organic ligands, see: Liao et al. (2008); Wang et al. (2008). For a related structure, see: Su et al. (2009).graphic file with name e-68-m1307-scheme1.jpg

Experimental  

Crystal data  

  • [Co(C8H4O4)(C10H8N2O2)(H2O)2]·C10H8N2O2

  • M r = 635.44

  • Triclinic, Inline graphic

  • a = 7.3883 (10) Å

  • b = 9.1788 (13) Å

  • c = 9.8054 (13) Å

  • α = 81.312 (2)°

  • β = 82.200 (2)°

  • γ = 79.301 (2)°

  • V = 641.92 (15) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 0.74 mm−1

  • T = 293 K

  • 0.27 × 0.24 × 0.20 mm

Data collection  

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2001) T min = 0.825, T max = 0.866

  • 3574 measured reflections

  • 2516 independent reflections

  • 2340 reflections with I > 2σ(I)

  • R int = 0.017

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.031

  • wR(F 2) = 0.081

  • S = 1.05

  • 2516 reflections

  • 202 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.48 e Å−3

  • Δρmin = −0.33 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: XP in SHELXTL; software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812040056/hy2589sup1.cif

e-68-m1307-sup1.cif (18.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812040056/hy2589Isup2.hkl

e-68-m1307-Isup2.hkl (123.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O5—H5A⋯O2 0.84 (2) 1.92 (2) 2.755 (2) 170 (2)
O5—H5B⋯O3i 0.85 (2) 1.85 (2) 2.660 (2) 158 (3)

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors are grateful for financial aid from the National Natural Science Foundation of China (grant No. 21001101).

supplementary crystallographic information

Comment

Much progress has been achieved in the design of supramolecular structures containing metal–organic molecules during recent years (Liao et al., 2008; Wang et al., 2008). Multifunctional ligands can link metal ions into one-, two- or three-dimensional structures, and in this context, aromatic carboxylates and 4,4'-bipyridine N,N'-dioxide have been used successfully to synthesize such materials.

As shown in Fig. 1, the coordination environment of the CoII atom, lying on an inversion center, can be described as distorted octahedral, defined by four O atoms in the equatorial plane from two terephthalate (tp) ligands and two 4,4'-bipyridine N,N'-dioxide (bpydo) ligands, and two water molecules in the axial positions. The bond distances and angles are normal (Su et al., 2009). The CoII atoms are connected by the tp and bpydo ligands, forming a layer structure parallel to (111). O—H···O hydrogen bonds (Table 1) link the uncoordinated bpydo molecules and the layers into a three-dimensional supramolecular structure (Fig. 2). Intralayer O—H···O hydrogen bonds and π–π interactions [centroid–centroid distances = 3.6643 (13) and 3.8048 (13) Å] are also observed.

Experimental

A mixture of terephthalic acid (0.1 mmol, 0.017 g), 4,4'-bipyridine N,N'-dioxide (0.2 mmol, 0.038 g), cobalt nitrate (0.1 mmol, 0.030 g), H2O (5 ml) and dimethylformamide (15 ml) was stirred at 358 K for 10 min. The mixture was filtrated and pink block crystals of the title compound were isolated after evaporation of the solvent.

Refinement

H atoms on C atoms were positioned geometrically and refined as riding atoms, with C—H = 0.93 Å and with Uiso(H) = 1.2Ueq(C). H atoms of water molecule were located in a difference Fourier map and refined with a restraint of O—H = 0.85 (1) Å and with Uiso(H) = 1.5Ueq(O).

Figures

Fig. 1.

Fig. 1.

The asymmetric unit of the title compound. Displacement ellipsoids are drawn at the 30% probability level. H atoms have been omitted for clarity. [Symmetry codes: (i) 1 - x, 1 - y, 1 - z; (ii) 1 - x, 2 - y, -z; (iii) 2 - x, 1 - y, -z; (iv) 2 - x, 2 - y, -z.]

Fig. 2.

Fig. 2.

View of the three-dimensional structure of the title compound, built by hydrogen bonds (dashed lines).

Crystal data

[Co(C8H4O4)(C10H8N2O2)(H2O)2]·C10H8N2O2 Z = 1
Mr = 635.44 F(000) = 327
Triclinic, P1 Dx = 1.644 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.3883 (10) Å Cell parameters from 2899 reflections
b = 9.1788 (13) Å θ = 2.3–26.1°
c = 9.8054 (13) Å µ = 0.74 mm1
α = 81.312 (2)° T = 293 K
β = 82.200 (2)° Block, pink
γ = 79.301 (2)° 0.27 × 0.24 × 0.20 mm
V = 641.92 (15) Å3

Data collection

Bruker APEXII CCD diffractometer 2516 independent reflections
Radiation source: fine-focus sealed tube 2340 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.017
φ and ω scans θmax = 26.1°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2001) h = −8→9
Tmin = 0.825, Tmax = 0.866 k = −10→11
3574 measured reflections l = −8→12

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081 H atoms treated by a mixture of independent and constrained refinement
S = 1.05 w = 1/[σ2(Fo2) + (0.0389P)2 + 0.3924P] where P = (Fo2 + 2Fc2)/3
2516 reflections (Δ/σ)max < 0.001
202 parameters Δρmax = 0.48 e Å3
2 restraints Δρmin = −0.33 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Co1 0.5000 0.5000 0.5000 0.01630 (11)
C1 0.3852 (3) 0.7380 (2) 0.2083 (2) 0.0221 (4)
H1 0.3528 0.6439 0.2142 0.027*
C2 0.4275 (3) 0.8156 (2) 0.08038 (19) 0.0209 (4)
H2 0.4249 0.7727 0.0007 0.025*
C3 0.4745 (2) 0.9580 (2) 0.06822 (18) 0.0186 (4)
C4 0.4684 (3) 1.0181 (2) 0.1918 (2) 0.0233 (4)
H4 0.4925 1.1145 0.1887 0.028*
C5 0.4271 (3) 0.9365 (2) 0.3176 (2) 0.0242 (4)
H5 0.4246 0.9781 0.3988 0.029*
C6 0.8804 (3) 0.7935 (2) 0.2615 (2) 0.0270 (4)
H6 0.8534 0.6980 0.2909 0.032*
C7 0.9285 (3) 0.8359 (2) 0.1234 (2) 0.0264 (4)
H7 0.9313 0.7689 0.0606 0.032*
C8 0.9735 (3) 0.9770 (2) 0.0743 (2) 0.0217 (4)
C9 0.9655 (3) 1.0700 (2) 0.1762 (2) 0.0317 (5)
H9 0.9958 1.1649 0.1496 0.038*
C10 0.9150 (3) 1.0265 (2) 0.3131 (2) 0.0344 (5)
H10 0.9102 1.0920 0.3777 0.041*
C11 0.6942 (2) 0.44694 (19) 0.21107 (18) 0.0164 (4)
C12 0.8539 (2) 0.47312 (19) 0.10187 (18) 0.0162 (3)
C13 1.0328 (2) 0.46045 (19) 0.13839 (18) 0.0175 (4)
H13 1.0549 0.4345 0.2308 0.021*
C14 1.1778 (2) 0.4865 (2) 0.03689 (18) 0.0179 (4)
H14 1.2970 0.4770 0.0617 0.021*
N1 0.3901 (2) 0.79675 (17) 0.32562 (16) 0.0206 (3)
N2 0.8716 (2) 0.88841 (18) 0.35576 (18) 0.0254 (4)
O1 0.3567 (2) 0.71908 (15) 0.44822 (14) 0.0266 (3)
O2 0.8186 (2) 0.84874 (17) 0.48725 (15) 0.0350 (4)
O3 0.57776 (18) 0.37620 (15) 0.18300 (14) 0.0232 (3)
O4 0.68909 (17) 0.50355 (14) 0.32145 (12) 0.0194 (3)
O5 0.67652 (19) 0.59404 (15) 0.59885 (14) 0.0225 (3)
H5A 0.719 (3) 0.6689 (19) 0.555 (2) 0.034*
H5B 0.605 (3) 0.626 (3) 0.6676 (17) 0.034*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Co1 0.01820 (19) 0.02037 (19) 0.01144 (18) −0.00652 (13) 0.00000 (13) −0.00296 (13)
C1 0.0249 (9) 0.0193 (9) 0.0237 (10) −0.0039 (7) −0.0069 (8) −0.0034 (7)
C2 0.0255 (9) 0.0216 (9) 0.0175 (9) −0.0037 (7) −0.0071 (7) −0.0046 (7)
C3 0.0171 (8) 0.0206 (9) 0.0179 (9) −0.0003 (7) −0.0048 (7) −0.0026 (7)
C4 0.0280 (10) 0.0213 (9) 0.0218 (10) −0.0048 (7) −0.0024 (8) −0.0057 (7)
C5 0.0301 (10) 0.0250 (10) 0.0188 (9) −0.0041 (8) −0.0018 (8) −0.0081 (8)
C6 0.0300 (10) 0.0204 (9) 0.0310 (11) −0.0082 (8) 0.0042 (8) −0.0062 (8)
C7 0.0288 (10) 0.0210 (9) 0.0302 (11) −0.0063 (8) 0.0028 (8) −0.0086 (8)
C8 0.0179 (9) 0.0185 (9) 0.0289 (11) −0.0020 (7) −0.0020 (7) −0.0048 (7)
C9 0.0451 (13) 0.0205 (10) 0.0318 (12) −0.0132 (9) −0.0024 (10) −0.0026 (8)
C10 0.0504 (14) 0.0267 (11) 0.0304 (12) −0.0155 (10) −0.0029 (10) −0.0080 (9)
C11 0.0182 (8) 0.0164 (8) 0.0137 (8) −0.0020 (6) −0.0012 (7) −0.0008 (7)
C12 0.0190 (8) 0.0162 (8) 0.0141 (9) −0.0044 (6) 0.0011 (7) −0.0055 (7)
C13 0.0218 (9) 0.0200 (8) 0.0113 (8) −0.0042 (7) −0.0021 (7) −0.0028 (7)
C14 0.0166 (8) 0.0217 (9) 0.0167 (9) −0.0039 (7) −0.0026 (7) −0.0051 (7)
N1 0.0212 (8) 0.0229 (8) 0.0159 (8) −0.0011 (6) −0.0012 (6) −0.0009 (6)
N2 0.0265 (8) 0.0251 (8) 0.0252 (9) −0.0074 (7) 0.0007 (7) −0.0043 (7)
O1 0.0343 (8) 0.0249 (7) 0.0168 (7) −0.0022 (6) 0.0022 (6) 0.0016 (5)
O2 0.0473 (9) 0.0337 (8) 0.0253 (8) −0.0170 (7) 0.0073 (7) −0.0058 (6)
O3 0.0241 (7) 0.0301 (7) 0.0195 (7) −0.0133 (6) 0.0022 (5) −0.0095 (5)
O4 0.0221 (6) 0.0259 (7) 0.0123 (6) −0.0093 (5) 0.0018 (5) −0.0055 (5)
O5 0.0234 (7) 0.0282 (7) 0.0181 (7) −0.0109 (6) 0.0008 (5) −0.0048 (6)

Geometric parameters (Å, º)

Co1—O4i 2.0865 (12) C7—H7 0.9300
Co1—O4 2.0865 (12) C8—C9 1.398 (3)
Co1—O5 2.0975 (13) C8—C8iii 1.475 (4)
Co1—O5i 2.0976 (13) C9—C10 1.364 (3)
Co1—O1i 2.1141 (13) C9—H9 0.9300
Co1—O1 2.1141 (13) C10—N2 1.356 (3)
C1—N1 1.350 (2) C10—H10 0.9300
C1—C2 1.373 (3) C11—O3 1.250 (2)
C1—H1 0.9300 C11—O4 1.263 (2)
C2—C3 1.397 (3) C11—C12 1.510 (2)
C2—H2 0.9300 C12—C14iv 1.395 (2)
C3—C4 1.398 (3) C12—C13 1.396 (2)
C3—C3ii 1.479 (4) C13—C14 1.389 (3)
C4—C5 1.371 (3) C13—H13 0.9300
C4—H4 0.9300 C14—C12iv 1.395 (2)
C5—N1 1.349 (3) C14—H14 0.9300
C5—H5 0.9300 N1—O1 1.319 (2)
C6—N2 1.350 (3) N2—O2 1.312 (2)
C6—C7 1.368 (3) O5—H5A 0.84 (2)
C6—H6 0.9300 O5—H5B 0.85 (2)
C7—C8 1.395 (3)
O4i—Co1—O4 180.0 C6—C7—H7 119.1
O4i—Co1—O5 90.46 (5) C8—C7—H7 119.1
O4—Co1—O5 89.54 (5) C7—C8—C9 115.04 (18)
O4i—Co1—O5i 89.54 (5) C7—C8—C8iii 122.1 (2)
O4—Co1—O5i 90.46 (5) C9—C8—C8iii 122.9 (2)
O5—Co1—O5i 180.00 (6) C10—C9—C8 122.32 (19)
O4i—Co1—O1i 95.05 (5) C10—C9—H9 118.8
O4—Co1—O1i 84.95 (5) C8—C9—H9 118.8
O5—Co1—O1i 92.31 (6) N2—C10—C9 120.4 (2)
O5i—Co1—O1i 87.69 (6) N2—C10—H10 119.8
O4i—Co1—O1 84.95 (5) C9—C10—H10 119.8
O4—Co1—O1 95.05 (5) O3—C11—O4 126.25 (16)
O5—Co1—O1 87.69 (6) O3—C11—C12 117.81 (15)
O5i—Co1—O1 92.31 (6) O4—C11—C12 115.90 (15)
O1i—Co1—O1 180.0 C14iv—C12—C13 119.39 (16)
N1—C1—C2 120.77 (17) C14iv—C12—C11 119.82 (15)
N1—C1—H1 119.6 C13—C12—C11 120.77 (15)
C2—C1—H1 119.6 C14—C13—C12 120.09 (16)
C1—C2—C3 120.92 (17) C14—C13—H13 120.0
C1—C2—H2 119.5 C12—C13—H13 120.0
C3—C2—H2 119.5 C13—C14—C12iv 120.52 (16)
C2—C3—C4 116.56 (17) C13—C14—H14 119.7
C2—C3—C3ii 121.9 (2) C12iv—C14—H14 119.7
C4—C3—C3ii 121.5 (2) O1—N1—C5 119.74 (16)
C5—C4—C3 120.68 (18) O1—N1—C1 120.43 (16)
C5—C4—H4 119.7 C5—N1—C1 119.82 (16)
C3—C4—H4 119.7 O2—N2—C6 120.49 (16)
N1—C5—C4 121.11 (17) O2—N2—C10 120.07 (17)
N1—C5—H5 119.4 C6—N2—C10 119.44 (18)
C4—C5—H5 119.4 N1—O1—Co1 121.82 (11)
N2—C6—C7 120.93 (18) C11—O4—Co1 130.60 (11)
N2—C6—H6 119.5 Co1—O5—H5A 117.3 (17)
C7—C6—H6 119.5 Co1—O5—H5B 102.4 (17)
C6—C7—C8 121.82 (19) H5A—O5—H5B 106 (2)
N1—C1—C2—C3 −0.8 (3) C4—C5—N1—C1 −3.0 (3)
C1—C2—C3—C4 −2.5 (3) C2—C1—N1—O1 −177.21 (16)
C1—C2—C3—C3ii 178.3 (2) C2—C1—N1—C5 3.6 (3)
C2—C3—C4—C5 3.1 (3) C7—C6—N2—O2 177.42 (19)
C3ii—C3—C4—C5 −177.7 (2) C7—C6—N2—C10 −1.4 (3)
C3—C4—C5—N1 −0.5 (3) C9—C10—N2—O2 −178.3 (2)
N2—C6—C7—C8 1.1 (3) C9—C10—N2—C6 0.5 (3)
C6—C7—C8—C9 0.0 (3) C5—N1—O1—Co1 −128.29 (15)
C6—C7—C8—C8iii 179.6 (2) C1—N1—O1—Co1 52.5 (2)
C7—C8—C9—C10 −0.9 (3) O4i—Co1—O1—N1 −171.81 (14)
C8iii—C8—C9—C10 179.5 (2) O4—Co1—O1—N1 8.19 (14)
C8—C9—C10—N2 0.6 (4) O5—Co1—O1—N1 97.52 (14)
O3—C11—C12—C14iv 42.0 (2) O5i—Co1—O1—N1 −82.48 (14)
O4—C11—C12—C14iv −135.93 (17) O3—C11—O4—Co1 2.1 (3)
O3—C11—C12—C13 −139.35 (17) C12—C11—O4—Co1 179.77 (11)
O4—C11—C12—C13 42.7 (2) O5—Co1—O4—C11 170.87 (15)
C14iv—C12—C13—C14 −0.6 (3) O5i—Co1—O4—C11 −9.13 (15)
C11—C12—C13—C14 −179.28 (16) O1i—Co1—O4—C11 78.51 (15)
C12—C13—C14—C12iv 0.6 (3) O1—Co1—O4—C11 −101.49 (15)
C4—C5—N1—O1 177.84 (17)

Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y+2, −z; (iii) −x+2, −y+2, −z; (iv) −x+2, −y+1, −z.

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O5—H5A···O2 0.84 (2) 1.92 (2) 2.755 (2) 170 (2)
O5—H5B···O3i 0.85 (2) 1.85 (2) 2.660 (2) 158 (3)

Symmetry code: (i) −x+1, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HY2589).

References

  1. Bruker (2001). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Liao, C. Y., Chan, K. T., Chiu, P. L., Chen, C. Y. & Lee, H. M. (2008). Inorg. Chim. Acta, 361, 2973–2978.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Su, S.-Q., Guo, Z.-Y., Li, G.-H., Deng, R.-P., Song, S.-Y., Qin, C., Pan, C.-L., Guo, H.-D., Cao, F., Wang, S. & Zhang, H.-J. (2009). Dalton Trans. 39, 9123–9130. [DOI] [PubMed]
  6. Wang, G.-H., Li, Z.-G., Jia, H.-Q., Hu, N.-H. & Xu, J.-W. (2008). Cryst. Growth Des. 8, 1932–1939.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812040056/hy2589sup1.cif

e-68-m1307-sup1.cif (18.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812040056/hy2589Isup2.hkl

e-68-m1307-Isup2.hkl (123.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES