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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Sep 1;68(Pt 10):o2829. doi: 10.1107/S1600536812036859

2-[(Anilino)(2-nitro­phen­yl)meth­yl]cyclo­hexa­none

Bagher Eftekhari-Sis a,*, Sahar Mohajer a, Orhan Büyükgüngör b
PMCID: PMC3470191  PMID: 23125635

Abstract

In the title compound, C19H20N2O3, the cyclo­hexa­none ring adopts a chair conformation with the amino­methyl group is positioned equatorially. An intra­molecular N—H⋯O hydrogen bond occurs. In the crystal, mol­ecules are linked by N—H⋯O hydrogen bonds.

Related literature  

For the synthesis of the title compound and related compounds, see: Eftekhari-Sis et al. (2012a ,b ). For the biological activity of β-amino ketones, see: Arend et al. (1998). For the anti-inflammatory and anti­microbial activity of β-amino ketones, see: Jadhav et al. (2008) and Kalluraya et al. (2001), respectively. For information on the Mannich reaction, see: Eftekhari-Sis et al. (2006); Samet et al. (2009); Azizi et al. (2006); Cordova (2004). For related structures, see: Eftekhari-Sis et al. (2012b ); Yuan et al. (2007); Fun et al. (2009).graphic file with name e-68-o2829-scheme1.jpg

Experimental  

Crystal data  

  • C19H20N2O3

  • M r = 324.37

  • Monoclinic, Inline graphic

  • a = 9.0535 (8) Å

  • b = 11.9947 (7) Å

  • c = 17.2267 (15) Å

  • β = 117.355 (6)°

  • V = 1661.5 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 296 K

  • 0.62 × 0.43 × 0.21 mm

Data collection  

  • Stoe IPDS 2 diffractometer

  • Absorption correction: integration (X-RED32; Stoe & Cie, 2002) T min = 0.784, T max = 0.958

  • 10888 measured reflections

  • 3434 independent reflections

  • 2210 reflections with I > 2σ(I)

  • R int = 0.043

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.054

  • wR(F 2) = 0.160

  • S = 0.97

  • 3434 reflections

  • 221 parameters

  • 16 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.79 e Å−3

  • Δρmin = −0.23 e Å−3

Data collection: X-AREA (Stoe & Cie, 2002); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2–8); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: WinGX (Farrugia, 2012).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812036859/fj2593sup1.cif

e-68-o2829-sup1.cif (25.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812036859/fj2593Isup2.hkl

e-68-o2829-Isup2.hkl (165KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812036859/fj2593Isup3.mol

Supplementary material file. DOI: 10.1107/S1600536812036859/fj2593Isup4.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1A⋯O1 0.85 (2) 2.31 (2) 2.906 (3) 127.0 (18)
N1—H1A⋯O2i 0.85 (2) 2.48 (2) 3.246 (3) 150.2 (19)

Symmetry code: (i) Inline graphic.

Acknowledgments

The research council of the University of Maragheh is acknowledged for financial support.

supplementary crystallographic information

Comment

β-amino ketones are widely found in natural and un-natural products, which exhibit anti-inflammatory (Jadhav et al., 2008) and antimicrobial (Kalluraya et al., 2001) activities. Mannich reaction (Eftekhari-Sis et al., 2006; Samet et al., 2009; Azizi et al., 2006; Cordova, 2004) is one of the most important basic reactions in organic chemistry for its use in synthesis of β-Amino ketones. We have synthesized the title compound and report its structure here, Fig 1. The cyclohexanone ring adopts chair conformation, and aminomethyl moiety is positioned equatorially on ring at C1.

Experimental

The title compound was obtained by adding of 0.04 g of Laponite-HMPC nano composite (Eftekhari-Sis et al., 2012a,b) to a mixture of 0.5 mmol of 2-nitrobenzaldehyde, 0.5 mmol of aniline and 3 equiv. of cyclohexanone and stirring at room temperature for 24 h. After completion of the reaction, 5 ml EtOH was added and catalyst was removed by filtration, and filtrate was concentrated under reduced pressure. The obtained crud product was recrystallized from EtOH to afford title compound in 62% yield. Colorless crystals suitable for crystal structure determination were grown from EtOH.

Refinement

Carbon bound H atoms were positioned geometrically, with C—H=0.93, 0.97, and 0.98 Å for aromatic, methylene and methine H, and constrained to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C). The nitrogen H atoms were located from the difference Fourier map allowed to refine freely.

Figures

Fig. 1.

Fig. 1.

The structure of title compound, showing 35% probability displacement ellipsoids and the atom numbering scheme. Intramolecular hydrogen bond are shown as dashed lines.

Fig. 2.

Fig. 2.

The stabilization of molecules in the crystal by inter- and intramolecular N—H···O hydrogen bonds and C—H···O interactions.

Crystal data

C19H20N2O3 F(000) = 688
Mr = 324.37 Dx = 1.297 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 10888 reflections
a = 9.0535 (8) Å θ = 1.7–28.1°
b = 11.9947 (7) Å µ = 0.09 mm1
c = 17.2267 (15) Å T = 296 K
β = 117.355 (6)° Prism, colorless
V = 1661.5 (2) Å3 0.62 × 0.43 × 0.21 mm
Z = 4

Data collection

Stoe IPDS 2 diffractometer 3434 independent reflections
Radiation source: fine-focus sealed tube 2210 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.043
rotation method scans θmax = 26.5°, θmin = 2.5°
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) h = −11→11
Tmin = 0.784, Tmax = 0.958 k = −15→14
10888 measured reflections l = −21→20

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.160 H atoms treated by a mixture of independent and constrained refinement
S = 0.97 w = 1/[σ2(Fo2) + (0.099P)2] where P = (Fo2 + 2Fc2)/3
3434 reflections (Δ/σ)max < 0.001
221 parameters Δρmax = 0.79 e Å3
16 restraints Δρmin = −0.23 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.3530 (2) 0.26145 (18) 0.22061 (12) 0.0453 (5)
H1 0.2966 0.3031 0.2482 0.054*
C2 0.2739 (2) 0.1473 (2) 0.19939 (13) 0.0505 (5)
C3 0.0911 (3) 0.1470 (3) 0.13652 (16) 0.0690 (7)
H3A 0.0301 0.1828 0.1635 0.083*
H3B 0.0522 0.0707 0.1229 0.083*
C4 0.0580 (3) 0.2080 (3) 0.05272 (15) 0.0731 (8)
H4A 0.1080 0.1670 0.0223 0.088*
H4B −0.0610 0.2115 0.0149 0.088*
C5 0.1274 (3) 0.3236 (3) 0.07141 (16) 0.0730 (8)
H5A 0.0699 0.3667 0.0969 0.088*
H5B 0.1089 0.3592 0.0172 0.088*
C6 0.3130 (3) 0.3223 (2) 0.13399 (16) 0.0660 (7)
H6A 0.3532 0.3984 0.1468 0.079*
H6B 0.3713 0.2856 0.1059 0.079*
C7 0.5407 (2) 0.26636 (18) 0.28430 (12) 0.0429 (5)
H7 0.5759 0.3436 0.2840 0.052*
C8 0.5807 (2) 0.23927 (17) 0.37935 (12) 0.0414 (4)
C9 0.5888 (2) 0.31751 (17) 0.44110 (13) 0.0448 (5)
C10 0.6289 (3) 0.2903 (2) 0.52741 (15) 0.0574 (6)
H10 0.6344 0.3455 0.5666 0.069*
C11 0.6599 (3) 0.1815 (2) 0.55354 (16) 0.0655 (7)
H11 0.6837 0.1613 0.6102 0.079*
C12 0.6555 (3) 0.1022 (2) 0.49480 (16) 0.0636 (6)
H12 0.6772 0.0281 0.5123 0.076*
C13 0.6193 (3) 0.13097 (19) 0.41035 (14) 0.0531 (5)
H13 0.6209 0.0757 0.3729 0.064*
C14 0.8043 (2) 0.20265 (19) 0.28812 (12) 0.0455 (5)
C15 0.8911 (3) 0.3024 (2) 0.31590 (16) 0.0613 (6)
H15 0.8341 0.3686 0.3111 0.074*
C16 1.0631 (3) 0.3029 (3) 0.35075 (17) 0.0752 (8)
H16 1.1208 0.3698 0.3693 0.090*
C17 1.1495 (3) 0.2056 (3) 0.35827 (16) 0.0750 (9)
H17 1.2650 0.2063 0.3830 0.090*
C18 1.0634 (3) 0.1077 (3) 0.32882 (17) 0.0726 (8)
H18 1.1208 0.0422 0.3320 0.087*
C19 0.8934 (3) 0.1054 (2) 0.29467 (15) 0.0580 (6)
H19 0.8370 0.0381 0.2757 0.070*
N1 0.6308 (2) 0.19843 (17) 0.25075 (11) 0.0467 (4)
N2 0.5569 (2) 0.43539 (16) 0.41868 (13) 0.0545 (5)
O1 0.3490 (2) 0.06234 (15) 0.22935 (12) 0.0718 (5)
O2 0.4393 (2) 0.46052 (15) 0.34977 (12) 0.0711 (5)
O3 0.6465 (3) 0.50448 (17) 0.47103 (14) 0.0861 (6)
H1A 0.593 (3) 0.133 (2) 0.2363 (14) 0.046 (6)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0372 (9) 0.0539 (13) 0.0416 (10) 0.0030 (8) 0.0155 (8) 0.0015 (9)
C2 0.0409 (10) 0.0643 (13) 0.0424 (11) −0.0054 (8) 0.0158 (8) 0.0008 (9)
C3 0.0425 (11) 0.090 (2) 0.0587 (14) −0.0105 (11) 0.0094 (10) 0.0033 (13)
C4 0.0445 (12) 0.115 (3) 0.0449 (12) 0.0038 (13) 0.0080 (10) −0.0011 (13)
C5 0.0605 (14) 0.093 (2) 0.0534 (14) 0.0169 (13) 0.0157 (11) 0.0192 (13)
C6 0.0604 (13) 0.0680 (17) 0.0568 (14) 0.0042 (11) 0.0160 (11) 0.0186 (12)
C7 0.0384 (9) 0.0447 (11) 0.0438 (10) −0.0013 (8) 0.0173 (8) −0.0015 (9)
C8 0.0294 (8) 0.0471 (12) 0.0420 (10) −0.0005 (7) 0.0116 (7) −0.0023 (9)
C9 0.0356 (9) 0.0486 (12) 0.0474 (11) 0.0007 (8) 0.0166 (8) −0.0039 (9)
C10 0.0526 (12) 0.0719 (17) 0.0474 (12) 0.0040 (10) 0.0226 (10) −0.0071 (11)
C11 0.0619 (13) 0.086 (2) 0.0441 (11) 0.0112 (12) 0.0205 (10) 0.0105 (12)
C12 0.0692 (14) 0.0574 (16) 0.0569 (14) 0.0108 (11) 0.0227 (11) 0.0139 (12)
C13 0.0545 (11) 0.0482 (13) 0.0485 (11) 0.0039 (9) 0.0168 (9) 0.0007 (10)
C14 0.0387 (9) 0.0631 (14) 0.0350 (9) −0.0016 (8) 0.0171 (8) 0.0002 (9)
C15 0.0499 (12) 0.0755 (17) 0.0601 (13) −0.0119 (11) 0.0267 (10) −0.0143 (12)
C16 0.0541 (14) 0.111 (2) 0.0618 (15) −0.0289 (14) 0.0275 (12) −0.0200 (15)
C17 0.0396 (11) 0.135 (3) 0.0495 (13) −0.0052 (14) 0.0200 (10) 0.0048 (15)
C18 0.0518 (13) 0.104 (2) 0.0636 (15) 0.0196 (14) 0.0278 (11) 0.0205 (15)
C19 0.0481 (11) 0.0691 (16) 0.0570 (13) 0.0066 (10) 0.0243 (10) 0.0072 (11)
N1 0.0382 (8) 0.0505 (12) 0.0492 (10) −0.0036 (7) 0.0184 (7) −0.0092 (8)
N2 0.0535 (10) 0.0533 (12) 0.0605 (12) −0.0005 (8) 0.0294 (9) −0.0071 (9)
O1 0.0614 (10) 0.0610 (11) 0.0812 (12) −0.0048 (7) 0.0226 (9) 0.0008 (9)
O2 0.0737 (11) 0.0559 (11) 0.0707 (11) 0.0117 (8) 0.0220 (9) 0.0046 (9)
O3 0.0958 (14) 0.0607 (12) 0.0903 (13) −0.0195 (10) 0.0329 (11) −0.0274 (10)

Geometric parameters (Å, º)

C1—C2 1.510 (3) C9—N2 1.459 (3)
C1—C7 1.543 (2) C10—C11 1.367 (4)
C1—C6 1.547 (3) C10—H10 0.9300
C1—H1 0.9800 C11—C12 1.376 (4)
C2—O1 1.202 (3) C11—H11 0.9300
C2—C3 1.505 (3) C12—C13 1.380 (3)
C3—C4 1.521 (4) C12—H12 0.9300
C3—H3A 0.9700 C13—H13 0.9300
C3—H3B 0.9700 C14—C15 1.391 (3)
C4—C5 1.494 (4) C14—C19 1.392 (3)
C4—H4A 0.9700 C14—N1 1.399 (2)
C4—H4B 0.9700 C15—C16 1.388 (3)
C5—C6 1.523 (3) C15—H15 0.9300
C5—H5A 0.9700 C16—C17 1.378 (4)
C5—H5B 0.9700 C16—H16 0.9300
C6—H6A 0.9700 C17—C18 1.371 (4)
C6—H6B 0.9700 C17—H17 0.9300
C7—N1 1.448 (3) C18—C19 1.373 (3)
C7—C8 1.541 (3) C18—H18 0.9300
C7—H7 0.9800 C19—H19 0.9300
C8—C13 1.387 (3) N1—H1A 0.85 (2)
C8—C9 1.395 (3) N2—O2 1.214 (2)
C9—C10 1.398 (3) N2—O3 1.219 (3)
C2—C1—C7 116.84 (17) C9—C8—C7 124.96 (18)
C2—C1—C6 108.61 (18) C8—C9—C10 123.4 (2)
C7—C1—C6 111.16 (16) C8—C9—N2 121.02 (19)
C2—C1—H1 106.5 C10—C9—N2 115.56 (19)
C7—C1—H1 106.5 C11—C10—C9 119.2 (2)
C6—C1—H1 106.5 C11—C10—H10 120.4
O1—C2—C3 121.7 (2) C9—C10—H10 120.4
O1—C2—C1 123.57 (18) C10—C11—C12 119.0 (2)
C3—C2—C1 114.8 (2) C10—C11—H11 120.5
C2—C3—C4 110.71 (19) C12—C11—H11 120.5
C2—C3—H3A 109.5 C11—C12—C13 121.0 (2)
C4—C3—H3A 109.5 C11—C12—H12 119.5
C2—C3—H3B 109.5 C13—C12—H12 119.5
C4—C3—H3B 109.5 C12—C13—C8 122.4 (2)
H3A—C3—H3B 108.1 C12—C13—H13 118.8
C5—C4—C3 111.2 (2) C8—C13—H13 118.8
C5—C4—H4A 109.4 C15—C14—C19 118.60 (19)
C3—C4—H4A 109.4 C15—C14—N1 121.8 (2)
C5—C4—H4B 109.4 C19—C14—N1 119.5 (2)
C3—C4—H4B 109.4 C16—C15—C14 119.8 (2)
H4A—C4—H4B 108.0 C16—C15—H15 120.1
C4—C5—C6 111.1 (2) C14—C15—H15 120.1
C4—C5—H5A 109.4 C17—C16—C15 120.9 (3)
C6—C5—H5A 109.4 C17—C16—H16 119.6
C4—C5—H5B 109.4 C15—C16—H16 119.6
C6—C5—H5B 109.4 C18—C17—C16 119.3 (2)
H5A—C5—H5B 108.0 C18—C17—H17 120.4
C5—C6—C1 112.4 (2) C16—C17—H17 120.4
C5—C6—H6A 109.1 C17—C18—C19 120.7 (3)
C1—C6—H6A 109.1 C17—C18—H18 119.6
C5—C6—H6B 109.1 C19—C18—H18 119.6
C1—C6—H6B 109.1 C18—C19—C14 120.7 (2)
H6A—C6—H6B 107.9 C18—C19—H19 119.6
N1—C7—C8 113.92 (16) C14—C19—H19 119.6
N1—C7—C1 109.45 (16) C14—N1—C7 121.03 (17)
C8—C7—C1 113.04 (15) C14—N1—H1A 112.7 (14)
N1—C7—H7 106.6 C7—N1—H1A 114.4 (14)
C8—C7—H7 106.6 O2—N2—O3 122.8 (2)
C1—C7—H7 106.6 O2—N2—C9 118.52 (18)
C13—C8—C9 114.90 (19) O3—N2—C9 118.7 (2)
C13—C8—C7 120.08 (18)
C7—C1—C2—O1 0.1 (3) C8—C9—C10—C11 −1.0 (3)
C6—C1—C2—O1 126.8 (2) N2—C9—C10—C11 179.8 (2)
C7—C1—C2—C3 −179.56 (18) C9—C10—C11—C12 1.9 (3)
C6—C1—C2—C3 −52.9 (2) C10—C11—C12—C13 −0.4 (4)
O1—C2—C3—C4 −125.0 (3) C11—C12—C13—C8 −2.1 (4)
C1—C2—C3—C4 54.7 (3) C9—C8—C13—C12 2.9 (3)
C2—C3—C4—C5 −55.0 (3) C7—C8—C13—C12 −179.79 (19)
C3—C4—C5—C6 56.5 (3) C19—C14—C15—C16 −1.2 (3)
C4—C5—C6—C1 −56.3 (3) N1—C14—C15—C16 −178.5 (2)
C2—C1—C6—C5 52.8 (3) C14—C15—C16—C17 0.0 (4)
C7—C1—C6—C5 −177.3 (2) C15—C16—C17—C18 1.6 (4)
C2—C1—C7—N1 56.4 (2) C16—C17—C18—C19 −2.0 (4)
C6—C1—C7—N1 −69.0 (2) C17—C18—C19—C14 0.8 (4)
C2—C1—C7—C8 −71.8 (2) C15—C14—C19—C18 0.8 (3)
C6—C1—C7—C8 162.83 (19) N1—C14—C19—C18 178.2 (2)
N1—C7—C8—C13 −32.7 (2) C15—C14—N1—C7 −39.6 (3)
C1—C7—C8—C13 93.1 (2) C19—C14—N1—C7 143.1 (2)
N1—C7—C8—C9 144.35 (18) C8—C7—N1—C14 −63.0 (2)
C1—C7—C8—C9 −89.9 (2) C1—C7—N1—C14 169.39 (18)
C13—C8—C9—C10 −1.4 (3) C8—C9—N2—O2 44.2 (3)
C7—C8—C9—C10 −178.57 (17) C10—C9—N2—O2 −136.5 (2)
C13—C8—C9—N2 177.87 (17) C8—C9—N2—O3 −137.9 (2)
C7—C8—C9—N2 0.7 (3) C10—C9—N2—O3 41.3 (3)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N1—H1A···O1 0.85 (2) 2.31 (2) 2.906 (3) 127.0 (18)
N1—H1A···O2i 0.85 (2) 2.48 (2) 3.246 (3) 150.2 (19)

Symmetry code: (i) −x+1, y−1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FJ2593).

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812036859/fj2593sup1.cif

e-68-o2829-sup1.cif (25.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812036859/fj2593Isup2.hkl

e-68-o2829-Isup2.hkl (165KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812036859/fj2593Isup3.mol

Supplementary material file. DOI: 10.1107/S1600536812036859/fj2593Isup4.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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