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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Sep 26;68(Pt 10):o3008. doi: 10.1107/S1600536812039700

3-Chloro­methyl-6,7-dimethyl-1,2-benz­oxazole

M Kayalvizhi a, G Vasuki a,*, A Veerareddy b, G Laxminarasimha b
PMCID: PMC3470366  PMID: 23125779

Abstract

In the title compound, C10H10ClNO, the benzoisoxazole ring is almost planar (r.m.s. deviation = 0.0121 Å) and the chloro substituent in the side chain is anti­clinal relative to the N—C bond of the isoxazole ring. In the crystal, adjacent mol­ecules are linked via a pair of weak C—H⋯N hydrogen bonds, forming dimers through a cyclic R 2 2(8) association.

Related literature  

For the biological and chemical applications of benzoxazoles, see: Ha et al. (2010); Kayalvizhi et al. (2011); Krishnaiah et al. (2009); Qu et al. (2008); Raju et al. (2002); Veerareddy et al. (2011). For graph-set analysis, see: Bernstein et al. (1995).graphic file with name e-68-o3008-scheme1.jpg

Experimental  

Crystal data  

  • C10H10ClNO

  • M r = 195.64

  • Monoclinic, Inline graphic

  • a = 20.4938 (15) Å

  • b = 4.1237 (3) Å

  • c = 24.6361 (18) Å

  • β = 114.151 (3)°

  • V = 1899.8 (2) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.36 mm−1

  • T = 295 K

  • 0.20 × 0.15 × 0.15 mm

Data collection  

  • Bruker Kappa APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 1999) T min = 0.932, T max = 0.948

  • 8155 measured reflections

  • 1748 independent reflections

  • 1396 reflections with I > 2σ(I)

  • R int = 0.035

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.041

  • wR(F 2) = 0.120

  • S = 1.06

  • 1748 reflections

  • 120 parameters

  • H-atom parameters constrained

  • Δρmax = 0.25 e Å−3

  • Δρmin = −0.19 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812039700/zs2231sup1.cif

e-68-o3008-sup1.cif (18.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039700/zs2231Isup2.hkl

e-68-o3008-Isup2.hkl (86.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812039700/zs2231Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C10—H10B⋯N2i 0.97 2.55 3.479 (3) 160

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank the Sophisticated Analytical Instrument Facility, IIT-Madras, Chennai, for the single-crystal X-ray data collection.

supplementary crystallographic information

Comment

The benzoxazole ring system is one of the most common heterocycles in medicinal chemistry (Qu et al., 2008). Isoxazole derivatives bearing various substituents are known to have diverse biological activities in pharmaceutical and agricultural areas (Ha et al., 2010). In agriculture applications herbicidal activity has been identified (Raju et al., 2002) as well as fungicidal activities against some plant pathogens (Ha et al., 2010). Some derivatives are also used as semiconductors and as corrosion inhibitors in fuels and lubricants (Raju et al., 2002). They are also important intermediates in the synthesis of many complex natural products (Krishnaiah et al., 2009). Among these compounds, 3-substituted-1,2-benzisoxazole and its derivatives are emerging as potential antipsychotic compounds (Kayalvizhi et al., 2011). Substituted benzoxazoles have been reported to possess diverse chemotherapeutic properties including antibiotic, antimicrobial, antiviral, antitumor and other pharmacological activities (Qu et al., 2008; Krishnaiah et al., 2009). With its extensive uses as a drug for epilepsy, its cost-effective synthesis remained a great challenge for synthetic organic chemists (Veerareddy et al., 2011). In a search for new benzisoxazole compounds with better biological activity, the title compound, C10H10ClNO, was synthesized and its crystal structure determined, in order to examine the structure–activity effects of the chloromethyl and 6,7-dimethyl substituents on the benzoisoxazole ring.

In the structure of the title compound (Fig. 1) the benzoisoxazole ring is planar with a root mean square deviation of 0.0121 Å. The torsion angle [N2—C3—C10—Cl = 121.31 (19)°] indicates that the side chain is anticlinal looking down the C3—C10 bond. The exocyclic angles C10—C3—C3a [129.35 (19)°] and C3—C3a—C4 [137.13 (19)°] deviate significantly from the normal values and this may be due to the intramolecular non-bonded interaction between the chlorine atom and an aromatic H atom [Cl···H4 = 3.2582 (8) Å]. In the crystal, adjacent molecules are linked via a pair of weak intermolecular C—H···N hydrogen bonds (Table 1) forming dimers through a cyclic R22(8) association (Bernstein et al., 1995) (Fig. 2).

Experimental

To a solution of 3,6,7-trimethylbenzo[d]isoxazole-2-oxide (1.0 mol) in methylene dichloride (10 ml) was added POCl3 (2.0 mol) dropwise at 20°C over a period of 5 min and stirred for 5 min also at 20°C. Triethylamine (2.0 mol) was then added dropwise at 20°C over a period of 10 min at such a rate that the reaction temperature did not exceed 30°C. The mixture was then stirred at reflux temperature for 48 h and cooled to 10°C. The reaction mixture was washed with chilled water, followed by addition of a 10% Na2CO3 solution to obtain a neutral pH. The aqueous layer was re-extracted with methylene chloride (2 × 100 ml). The combined organic layer was dried over anhydrous Na2SO4 and the solvent was removed under vacuum to give the crude product, which was purified by column chromatography and by crystallization (Veerareddy et al., 2011).

Refinement

All the H atoms were positioned geometrically and treated as riding on their parent atoms, with C—H = 0.93 Å (aromatic), 0.96 Å (methyl) and 0.97 Å (methylene), and refined using a riding model with Uiso(H) = 1.2Ueq or 1.5Ueq(parent atom).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound showing atom numbering, with displacement ellipsoids drawn at the 50% probability level.

Fig. 2.

Fig. 2.

The crystal packing of the title compound in the unit cell, viewed down the b axis, showing the molecular dimers.

Crystal data

C10H10ClNO F(000) = 816
Mr = 195.64 Dx = 1.368 Mg m3
Monoclinic, C2/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yc Cell parameters from 3599 reflections
a = 20.4938 (15) Å θ = 2.2–25.7°
b = 4.1237 (3) Å µ = 0.36 mm1
c = 24.6361 (18) Å T = 295 K
β = 114.151 (3)° Block, colourless
V = 1899.8 (2) Å3 0.20 × 0.15 × 0.15 mm
Z = 8

Data collection

Bruker Kappa APEXII CCD diffractometer 1748 independent reflections
Radiation source: fine-focus sealed tube 1396 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.035
ω and φ scans θmax = 25.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 1999) h = −24→24
Tmin = 0.932, Tmax = 0.948 k = −4→4
8155 measured reflections l = −29→29

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.0575P)2 + 1.2791P] where P = (Fo2 + 2Fc2)/3
1748 reflections (Δ/σ)max < 0.001
120 parameters Δρmax = 0.25 e Å3
0 restraints Δρmin = −0.19 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl 0.36216 (3) 0.4407 (2) 0.14499 (3) 0.0810 (3)
O1 0.11696 (8) 0.2766 (4) 0.03641 (6) 0.0579 (4)
C3A 0.19031 (10) 0.5502 (5) 0.11668 (8) 0.0449 (4)
C4 0.20916 (11) 0.6941 (5) 0.17240 (9) 0.0535 (5)
H4 0.2530 0.7972 0.1919 0.064*
C7 0.07354 (10) 0.3861 (5) 0.11299 (8) 0.0490 (5)
C7A 0.12460 (10) 0.4049 (5) 0.08966 (8) 0.0464 (5)
C6 0.09376 (11) 0.5243 (5) 0.16895 (9) 0.0529 (5)
C3 0.22228 (11) 0.5014 (5) 0.07591 (9) 0.0492 (5)
C5 0.16064 (12) 0.6770 (5) 0.19698 (9) 0.0560 (5)
H5 0.1723 0.7708 0.2341 0.067*
N2 0.18083 (10) 0.3418 (5) 0.02923 (8) 0.0610 (5)
C8 0.00258 (12) 0.2276 (6) 0.07915 (10) 0.0667 (6)
H8A −0.0058 0.0668 0.1038 0.100*
H8B 0.0026 0.1261 0.0441 0.100*
H8C −0.0345 0.3882 0.0679 0.100*
C10 0.29367 (12) 0.6064 (6) 0.08013 (10) 0.0620 (6)
H10A 0.2966 0.8413 0.0816 0.074*
H10B 0.3001 0.5344 0.0452 0.074*
C9 0.04460 (14) 0.5113 (7) 0.20055 (11) 0.0761 (7)
H9A −0.0006 0.6070 0.1759 0.114*
H9B 0.0656 0.6289 0.2373 0.114*
H9C 0.0374 0.2895 0.2086 0.114*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl 0.0488 (4) 0.1014 (6) 0.0848 (5) 0.0015 (3) 0.0190 (3) 0.0112 (4)
O1 0.0509 (8) 0.0716 (10) 0.0462 (7) −0.0017 (7) 0.0147 (6) −0.0086 (7)
C3A 0.0457 (10) 0.0404 (10) 0.0441 (10) 0.0069 (8) 0.0137 (8) 0.0031 (8)
C4 0.0503 (11) 0.0513 (12) 0.0505 (11) 0.0030 (9) 0.0123 (9) −0.0051 (9)
C7 0.0434 (10) 0.0489 (12) 0.0491 (11) 0.0097 (9) 0.0134 (9) 0.0077 (9)
C7A 0.0471 (10) 0.0449 (11) 0.0403 (9) 0.0087 (8) 0.0107 (8) 0.0016 (8)
C6 0.0528 (12) 0.0534 (12) 0.0510 (11) 0.0142 (9) 0.0196 (9) 0.0066 (9)
C3 0.0498 (11) 0.0469 (11) 0.0497 (11) 0.0075 (9) 0.0191 (9) 0.0045 (9)
C5 0.0624 (13) 0.0571 (13) 0.0445 (10) 0.0093 (10) 0.0178 (10) −0.0053 (9)
N2 0.0569 (11) 0.0739 (13) 0.0522 (10) 0.0036 (9) 0.0225 (9) −0.0040 (9)
C8 0.0487 (12) 0.0770 (16) 0.0676 (14) −0.0030 (11) 0.0170 (10) 0.0022 (12)
C10 0.0605 (13) 0.0608 (14) 0.0678 (14) 0.0006 (11) 0.0295 (11) 0.0058 (11)
C9 0.0754 (16) 0.0931 (19) 0.0708 (15) 0.0116 (14) 0.0411 (13) 0.0039 (13)

Geometric parameters (Å, º)

Cl—C10 1.776 (2) C6—C9 1.505 (3)
O1—C7A 1.363 (2) C3—N2 1.295 (3)
O1—N2 1.417 (2) C3—C10 1.488 (3)
C3A—C7A 1.372 (3) C5—H5 0.9300
C3A—C4 1.397 (3) C8—H8A 0.9600
C3A—C3 1.420 (3) C8—H8B 0.9600
C4—C5 1.361 (3) C8—H8C 0.9600
C4—H4 0.9300 C10—H10A 0.9700
C7—C7A 1.387 (3) C10—H10B 0.9700
C7—C6 1.389 (3) C9—H9A 0.9600
C7—C8 1.498 (3) C9—H9B 0.9600
C6—C5 1.406 (3) C9—H9C 0.9600
C7A—O1—N2 107.37 (15) C6—C5—H5 118.4
C7A—C3A—C4 118.97 (18) C3—N2—O1 106.82 (16)
C7A—C3A—C3 103.89 (17) C7—C8—H8A 109.5
C4—C3A—C3 137.13 (19) C7—C8—H8B 109.5
C5—C4—C3A 117.15 (19) H8A—C8—H8B 109.5
C5—C4—H4 121.4 C7—C8—H8C 109.5
C3A—C4—H4 121.4 H8A—C8—H8C 109.5
C7A—C7—C6 114.78 (18) H8B—C8—H8C 109.5
C7A—C7—C8 121.25 (18) C3—C10—Cl 110.08 (15)
C6—C7—C8 123.97 (19) C3—C10—H10A 109.6
O1—C7A—C3A 109.88 (17) Cl—C10—H10A 109.6
O1—C7A—C7 124.63 (18) C3—C10—H10B 109.6
C3A—C7A—C7 125.48 (18) Cl—C10—H10B 109.6
C7—C6—C5 120.40 (19) H10A—C10—H10B 108.2
C7—C6—C9 120.5 (2) C6—C9—H9A 109.5
C5—C6—C9 119.09 (19) C6—C9—H9B 109.5
N2—C3—C3A 112.04 (18) H9A—C9—H9B 109.5
N2—C3—C10 118.61 (19) C6—C9—H9C 109.5
C3A—C3—C10 129.35 (19) H9A—C9—H9C 109.5
C4—C5—C6 123.19 (19) H9B—C9—H9C 109.5
C4—C5—H5 118.4
C7A—C3A—C4—C5 0.8 (3) C7A—C7—C6—C9 −177.88 (19)
C3—C3A—C4—C5 −178.2 (2) C8—C7—C6—C9 2.2 (3)
N2—O1—C7A—C3A 0.2 (2) C7A—C3A—C3—N2 −0.4 (2)
N2—O1—C7A—C7 −178.95 (17) C4—C3A—C3—N2 178.7 (2)
C4—C3A—C7A—O1 −179.26 (17) C7A—C3A—C3—C10 179.5 (2)
C3—C3A—C7A—O1 0.1 (2) C4—C3A—C3—C10 −1.4 (4)
C4—C3A—C7A—C7 −0.1 (3) C3A—C4—C5—C6 −0.2 (3)
C3—C3A—C7A—C7 179.25 (18) C7—C6—C5—C4 −1.2 (3)
C6—C7—C7A—O1 177.83 (18) C9—C6—C5—C4 178.5 (2)
C8—C7—C7A—O1 −2.3 (3) C3A—C3—N2—O1 0.5 (2)
C6—C7—C7A—C3A −1.2 (3) C10—C3—N2—O1 −179.36 (17)
C8—C7—C7A—C3A 178.7 (2) C7A—O1—N2—C3 −0.5 (2)
C7A—C7—C6—C5 1.8 (3) N2—C3—C10—Cl −121.31 (19)
C8—C7—C6—C5 −178.1 (2) C3A—C3—C10—Cl 58.8 (3)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C10—H10B···N2i 0.97 2.55 3.479 (3) 160

Symmetry code: (i) −x+1/2, −y+1/2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZS2231).

References

  1. Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. pp. 1555–1573.
  2. Bruker (1999). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Bruker (2004). APEX2 and SAINT-Plus Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  5. Ha, K., Lim, H. S. & Kim, H. J. (2010). Acta Cryst. E66, o2483. [DOI] [PMC free article] [PubMed]
  6. Kayalvizhi, M., Vasuki, G., Ramamurthi, K., Veerareddy, A. & Laxmi­nara­simha, G. (2011). Acta Cryst. E67, o2999. [DOI] [PMC free article] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812039700/zs2231sup1.cif

e-68-o3008-sup1.cif (18.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039700/zs2231Isup2.hkl

e-68-o3008-Isup2.hkl (86.2KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812039700/zs2231Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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