Abstract
Pathogens are sensed by Toll-like receptors (TLRs) and a growing number of non-TLR receptors. Integrins constitute a family of signaling receptors exploited by viruses and bacteria to access cells. By gain- and loss-of-function approaches we found that αvβ3-integrin is a sensor of and plays a crucial role in the innate defense against herpes simplex virus (HSV). αvβ3-integrin signaled through two pathways. One concurred with TLR2, affected activation/induction of interferons type 1 (IFNs-1), NF-κB (nuclear factor kappa-light-chain-enhancer of activated B cells), and a polarized set of cytokines and receptors. The virion glycoproteins gH/gL sufficed to induce IFN1 and NF-κB via this pathway. The other pathway was TLR2-independent, involved sarcoma (SRC)-spleen tyrosine kinase (SYK)-Caspase recruitment domain-containing protein 9 (CARD9)-TRIF (TIR-domain-containing adapter-inducing interferon-β), and affected interferon regulatory factor 3 and 7 (IRF3-IRF7). The importance of αvβ3-integrin-mediated defense is reflected in the observation that HSV evolved the immediate-early infected cellular protein 0 (ICP0) protein to counteract it. We propose that αvβ3-integrin is considered a class of non-TLR pattern recognition receptors, a role likely exerted toward viruses and bacteria that interact with integrins and mount an innate response.
The ability of a virus to establish an infection is the outcome of the encounter of the virus with a cell that carries receptor(s) for that virus, of the innate response of the cell aimed to limit the infection within the initially infected cell and in adjacent cells through the secretion of type-1 IFNs and inflammatory cytokines, and lastly of the virus’s ability to combat and evade the host response. The innate response, which is also critical in eliciting the adaptive response, follows the recognition of pathogen-associated molecular patterns (PAMPs) by evolutionarily ancient pattern recognition receptors (PRRs), which constitute the first line of defense against invaders. In humans, Toll-like receptor (TLR) signaling converges in the transcription factors NF-κB, interferon regulatory factor 3 and 7 (IRF3 and IRF7), and in the production of cytokines, especially type-1 IFNs, and chemokines (1, 2). PRRs other than TLRs (non-TLRs) emerged recently as important contributors to innate immunity (3). They comprise a heterogeneous collection of membrane-bound, cytoplasmic, or soluble proteins, exemplified by the C-type lectin (CLRs), nucleotide oligomerization domain receptors (NOD)-like receptors (NLRs), retinoic acid-inducible gene 1 (RIGI)-like (RLRs), and absent in melanoma 2 (AIM2) receptors, in addition to scavenger receptors and others (for reviews, see refs. 1 and 4–7). Typically, non-TLR PRRs signal through autonomous pathways and may synergize with TLRs (8).
Herpes simplex virus 1 (HSV-1) infection is widespread among humans (9). In the human body, the virus preferentially targets epithelial and neuronal cells; it persists lifelong in neurons in a latent-reactivable state. Hitherto, the known innate defenses against HSV consist of TLR2, located at or around cholesterol-rich membrane microdomains, the endosomal TLR3 and TLR9, and the cytosolic RNA and DNA sensors (9–13). Opposing the host defenses are an array of viral proteins exemplified by the virion–host–shutoff Rnase, the immediate-early infected cell protein 0 (ICP0) and ICP27 (9, 11–13).
HSV-1 enters cells through a complex process that involves at least four essential glycoproteins (gD, gH/gL, and gB) and a number of cellular receptors, among which are the gD receptors nectin1 and herpesvirus entry mediator (for reviews, see refs. 14–16). HSV entry may occur by different pathways—that is, uptake into acidic or neutral endosomes or direct fusion at the plasma membrane. The choice of the entry pathway is entirely dictated by the cell (17). Recently, the epithelial/endothelial αvβ3-integrin emerged as the cellular factor that routes HSV to the acidic endosomal pathway. Specifically, αvβ3-integrin relocalizes the nectin1 receptor, and consequently HSV, to cholesterol-rich microdomains and thus enables virus uptake into dynamin2-dependent acidic endosomes (18, 19).
Here, we asked whether, by relocalizing HSV to the cholesterol-rich microdomains where TLR2 resides, αvβ3-integrin participates in the innate response to the virus. By gain- and loss-of-function assays, we show that type-1 IFNs, NF-κB, and a specific set of inflammatory cytokines are induced by αvβ3-integrin. αvβ3-integrin physically interacts with the virion glycoproteins gH/gL, and with TLR2, and thus cross-links the virion and the PRR. The importance of the αvβ3-integrin defense mechanism is reflected in the observation that it was counteracted by the viral protein ICP0; indeed, a HSV mutant deleted in ICP0 replicated to a higher extent in cells in which β3-integrin was silenced.
Results
β3-Integrin–Silenced 293T Cells Support HSV Replication.
To ask the question whether αvβ3-integrin plays a role in the innate response to HSV-1, we performed loss-of-function experiments and silenced β3-integrin in 293T cells. Silencing was carried out by means of lentiviruses encoding two sh-RNA (reagents provided by and described in ref, 20). One of the stably silenced 293T cell lines was designated as sh-β3 and used in the experiments described below. We verified that β3-integrin mRNA and surface expression were reduced by q-RT-PCR and cell-ELISA (enzyme-linked immunosorbent assay). In either assay, reduction was about 70% (Fig. 1 A and B) relative to control mock-silenced cells, generated by a control nontargeting sh-RNA lentivirus (20). Immunoblotting (IB) of β3-integrin confirmed the decrease (Fig. 1C). The β3-integrin silencing was specific, as β6-integrin (Fig. 1A) was unaffected.
To rule out that any decrease in innate responses was due to reduced infection, we verified that sh-β3 293T cells remained susceptible to HSV. Wt- and sh-β3 293T cells were infected with R8102, a recombinant carrying β-gal under the immediate-early α27 promoter (21). Reduction of infection results in decreased β-gal expression. Fig. 1D shows that sh-β3 293T cells support HSV infection with similar efficiency as wt-cells at 5–10 PFU/cell. Replication in wt- and control mock-silenced cells was indistinguishable (Fig. S1A). Sh-β3 and wt-293T cells produced similar amounts of immediate-early, early, and late viral proteins (Fig. S1B). β3-Integrin silencing resulted in the functional suppression of the β3-integrin– and dynamin2–dependent pathway of HSV entry (19). To this end, we transfected sh-β3, mock-silenced, or αvβ3-integrin-overexpressing cells with a dominant negative (DN) dynamin2 (Dyn-K44A). R8102 infection was unaffected by Dyn-K44A in sh-β3 cells (Fig. 1E), and it was inhibited in αvβ3-integrin-overexpressing or control cells (19).
NF-κB Response Is Inhibited in β3-Integrin–Silenced 293T Cells, Particularly in the Presence of TLR2.
The NF-κB response induced by incoming HSV, including UV-inactivated or entry-defective virions, is detectable at 2 h postinfection (p.i.), and more sustained at 6–8 h p.i (9, 22–24). It is best seen with the ΔICP0 recombinant R7910 (25), as ICP0 counteracts part of the host defense (26), and in its absence, the host response is augmented. NF-κB activation was dramatically inhibited in β3-integrin–silenced cells (Fig. 2 A and B). Specifically, 293T cells express no endogenous TLR2. Control mock-silenced or sh-β3 cells were transfected or not with TLR2 and plasmids encoding NF-κB-driven luciferase (NF-κB-luc) and Renilla-luciferase and then infected with wt-HSV, UV-inactivated wt-HSV, or R7910. In β3-integrin–silenced cells, both the TLR2-independent and -dependent NF-κB activation was dramatically reduced (Fig. 2 A and B). Interestingly, the inhibition was seen also when NF-κB was activated by a commercial source of lipopolysaccharide (LPS) from Escherichia coli 0111:B4, able to activate TLR2 (Fig. 2 A and B). The results imply that αvβ3-integrin–mediated innate response was activated also by bacterial components.
To validate the decrease in NF-κB activation, we measured the endogenous NF-κB. Of note, NF-κB activation is exerted through phosphorylation and degradation of the Iκ-Bα inhibitor. Lysates of control or sh-β3 cells, positive or negative for TLR2, infected with R7910 or UV-HSV-1, were subjected to SDS/PAGE; Iκ-Bα was detected by IB. The results of Fig. 2C, quantified in Fig. 2D, show that in TLR2+ mock-silenced cells, Iκ-Bα was decreased by about 65% in infected cells, relative to uninfected cells. In sh-β3 cells, Iκ-Bα did not undergo the decrease seen in the mock-silenced cells, as exemplified by the 2 and 4 h samples. These loss-of-function experiments provide the first line of evidence that αvβ3-integrin plays a prominent role in NF-κB response induced by HSV or bacterial components in 293T cells, particularly in the presence of TLR2.
Expression of IFNβ, IFNα, IL2, and IL10 (Group 1) Cytokines Is Strongly Inhibited in TLR2+ β3-Integrin–Silenced 293T Cells.
To obtain a snapshot of the signaling pathways affected by αvβ3-integrin, we first profiled the NF-κB-related genes in sh-β3 293T cells, positive or negative for TLR2, by microarray and validated the most highly affected genes and genes of interest by q-RT-PCR. Variations ≥twofold were considered as significant. Based on the effect of β3-integrin silencing, we clustered the genes into three groups. The expression of group 1 cytokine genes—IFNB1, IFNA1, IL2, and IL10—was dramatically decreased in sh-β3 293T cells, independent of whether they were negative or positive for TLR2 (Fig. 3 A–D). These genes were among the most highly induced by HSV, particularly in the presence of TLR2 (note the fold increase in Fig. 3). A variant to this group was IL2RA, whose expression was increased (not decreased) by β3-integrin silencing, only in a TLR2-independent manner (Fig. S2A). Thus, β3-integrin silencing exerts an opposite effect on IL2 and its receptor, suggesting a fine-tuning capability. IFNβ and IL10 decreases were validated at the protein level (Fig. 3 E and F). These results show that HSV-induced production of IFNα, IFNβ, IL2, and IL10 is dictated by αvβ3-integrin. Inasmuch as this signaling is enhanced by TLR2, it may well have the transcription factor NF-κB as its master regulator. The down-regulation of group 1 cytokine genes seen in β3-integrin–silenced and TLR2− cells may reflect the TLR2-independent ability of αvβ3-integrin to activate NF-κB, documented here through antibody cross-linking (Fig. S3) and elsewhere (27).
Expression of SRC, SYK, IRF3, IRF7, TRIF, and CARD9 (Group 2) Genes Is Moderately Affected by β3-Integrin Silencing.
The expression of group 2 genes was down-regulated in sh-β3 cells, only in the absence of TLR2 (Fig. 3 G–L). These genes were not significantly modified in the presence of TLR2 and modestly up-regulated by HSV. SRC is an effector in integrin signaling. IRF3 and IRF7 control the IFN enhancesome. TRIF is an adaptor in the MYD88-independent signaling pathways. Collectively, these genes identify a TLR2-independent signaling pathway, distinct from the one defined by group 1 genes.
Expression of TNF, LTRB, IL1A, IL6, BCL3, FASL, and PTAFR (Group 3) Genes Is Unaffected by β3-Integrin Silencing.
The expression of group 3 genes, which included TNF, LTBR, IL1A, IL6, BCL3, FASLG (Fig. 3 M–R), and PTAFR (Fig. S2B), was not modified in sh-β3 cells, irrespective of TLR2. We also included in this group LTBR because, like the TNF and FASL ligands, it belongs to the death domain receptor family. Beyond its intrinsic significance, group 3 genes show that β3-integrin silencing selectively affects the cell transcriptome. Altogether, the profile of affected genes indicates that αvβ3-integrin–mediated induction of cytokines is highly polarized.
Gain-of-Function Experiments: The NF-κB and Type-1 IFN Response Is Increased in K562 Cells Expressing αvβ3-Integrin.
We verified the above conclusion in a gain-of-function experiment, independent of silencing approach. The myelomonocytic wt-K562 cells fail to express αv- and β3-integrins (28, 29). Stable transformants expressing αvβ3-integrin were described (28); the αv- and β3-integrin expression profile in wt- and αvβ3-integrin+ K562 cells was previously assessed by RT-PCR, immunofluorescence, and fluorescence activated cell sorting (29). Here, wt-K562 cells and the αvβ3-integrin+ K562 were transfected with NF-κB-luc, Renilla-luciferase, and TLR2 and infected with R7910. The virus-induced NF-κB-luc was several-fold higher in αvβ3-integrin–positive than in wt-K562 (Fig. 4A). The increase was seen also with LPS (Fig. 4A), again indicating that the αvβ3-integrin–mediated effect is not restricted to HSV. Next, we compared the extent of IFNB and IL10 induction between αvβ3-integrin–positive and –negative K562 cells. Their expression and secretion were higher in the β3-integrin–positive than in the β3-integrin–negative K562 cells (Fig. 4 B–E). Thus, even in K562 cell system, αvβ3-integrin was critical for the induction of IFNB1 and IL10.
αvβ3-integrin Physically Interacts with the Virion Glycoproteins gH/gL and with TLR2.
Mechanistically, the involvement of αvβ3-integrin in the innate response to HSV may be exerted through its physical interaction with virions and/or with TLR2. With respect to the virion components, we focused on the envelope heterodimeric glycoproteins gH/gL because, in other herpesviruses, they interact with integrins (30–32). Moreover, gH/gL from HSV and from other herpesviruses interacts with TLR2 (33). The αvβ3-integrin–gH/gL physical interaction was assessed by Biacore (Fig. 5 A–C). The thermodynamic KD was KD = (4.2 ± 1.8) × 10−6 M (Fig. 5 B and C). Thus, αvβ3-integrin binds gH/gL at relatively low affinity. We note that αvβ3-integrin does not play an essential role in HSV entry, and cells that lack β3-integrin are readily infected (29). To document the interaction of αvβ3-integrin with TLR2, we cotransfected 293T cells with TLR2-flag and with αvβ3-integrin and carried out coimmunoprecipitation experiments. TLR2-flag coimmunoprecipitated β3-integrin (Fig. 5D), in agreement with a previous report (20).
Recently, we reported that soluble gHt/gL was sufficient to induce NF-κB activation (24). Here, we ascertained that this activation is αvβ3-integrin–dependent, as it was strongly decreased in sh-β3 293T cells. The gHt/gL-mediated activation of NF-κB was specific, as it was inhibited by gHt/gL preincubation with its neutralizing MAb 52S (34) or heat-denaturation (Fig. 5E).
We further demonstrate that gHt/gL was sufficient for IFNB induction and that this induction is αvβ3-integrin–dependent, in that it was strongly decreased in sh-β3 293T cells (Fig. 5 F and G).
Defective Replication of the ΔICP0 R7910 Mutant Is Partially Rescued in β3-Integrin–Silenced 293T Cells.
It is well established that some of the innate responses limit viral replication within the initially infected cell and ΔICP0 mutants are highly impaired in replication (9).We measured the yield of wt and ΔICP0 R7910 in β3-integrin–silenced and mock-silenced 293T cells. Surprisingly, the growth defect of R7910, apparent in αvβ3-integrin+ TLR2+ cells, was partly rescued in the β3-integrin–silenced cells, particularly when TLR2 was absent (Fig. 6 A and B)—that is, under conditions in which the NF-κB response was severely decreased. Of note, the replication of wt-HSV was not increased in β3-integrin-silenced cells relative to the nonsilenced cells and was either unmodified or slightly decreased.
Discussion
The innate response to a viral infection plays a fundamental role in establishment of the infection and in eliciting adaptive immunity. By loss- and gain-of-function assays we show that αvβ3-integrin is a major sensor and activator of specific components of the innate responses to HSV. Specifically, αvβ3-integrin is critical for the production of type 1-IFNs and of a specific set of cytokines, is a major determinant in NF-κB activation, and reduces viral growth in a single replication cycle. The cumulative picture emerging from current and previous reports (18, 19) is that αvβ3-integrin relocates the HSV receptor nectin1, and thus HSV, to cholesterol-rich membrane microdomains, from where the virus is endocytosed, and simultaneously initiates the innate response. We propose that αvβ3-integrin be considered a non-TLR PRR for HSV and possibly for a number of other viral and bacterial pathogens. Our finding has implications for the design of anti-HSV vaccines.
We classified genes related to the innate response to HSV into three groups based on how they respond to β3-integrin silencing. The specificity of the αvβ3-integrin–mediated response was evident from the observation that β3-integrin silencing resulted in a highly polarized effect—that is, in strong decrease of group 1 cytokines (IFNβ, IFNα, IL2, and IL10), a moderate effect on group 2 genes (SRC, SYK, IRF3, IRF7, TRIF, and CARD9), and no effect on group 3 genes (TNF, LTBR, IL1A, IL6, BCL3, FASL, and PTAFR), even though some of them are known to be dependent on NF-κB (8). Collectively, group 1 and group 2 genes delineate two distinct αvβ3-integrin–mediated signaling pathways.
The dependence of the activation of type 1-IFNs on αvβ3-integrin and TLR2 was unexpected. To date, the sensors recognized as important for HSV-induced type-1 IFN production have been RLRs, TLR9 in plasmacytoid cells, and TLR3 (10–12). Furthermore, until recently TLR2 was thought to be involved mainly in antibacterial defense and inflammatory cytokine induction, not in the activation of type-1 IFN (35). A role for TLR2 in type-1 IFN induction by murine cytomegalovirus and vaccinia virus was recently documented in macrophages (36).
A snapshot of the signaling pathway of group 1 cytokine genes highlighted that it overlapped in part but was independent of the pathway regulated by TLR2. In fact, β3-integrin was required for the activation of group 1 cytokines in both TLR2+ and TLR2− cells; hence, TLR2 enhanced but was not the determinant factor in up-regulation of the cytokine response.
The signaling pathway defined by group 2 genes (SRC, SYK, IRF3, IRF7, TRIF, and CARD9) differed from that of group 1 cytokines in that it was activated exclusively by β3-integrin and not by TLR2. It included TRIF, a MYD88-independent adaptor in TLR3 signaling, which leads to activation of IRF3 and IRF7, major transcription factors of type-1 IFN. It bears a striking resemblance to a recently described pathway initiated by immunoreceptor tyrosine-based activation motifs, leukocyte integrin, or the non-TLRs CLRs; the latter is fundamental in the innate defense against fungi (4, 7, 37).
αvβ3-integrin sensed HSV by binding the virion glycoproteins gH/gL (Fig. 5), which, in turn, bind TLR2 (24). αvβ3-integrin physically interacted with TLR2 and thus bridged the virion and TLR2. Remarkably, soluble gH/gL was sufficient for the αvβ3-integrin/TLR2-dependent induction of IFN-1 and NF-κB activation, testifying a signaling capability of this glycoprotein. Because gH/gL are essential for HSV entry, it follows that entry of the virus into the cell inevitably induces an innate immune response. By deploying PRRs whose PAMPs are the very same virion glycoproteins essential for virus entry, the cell ensures that the virus cannot escape its first line of defense.
How does HSV escape the αvβ3-integrin–mediated defense? It is well established that HSV uses the virion–host–shutoff RNase encoded by the UL41 gene to selectively degrade some of the NF-κB–dependent and –independent RNAs induced after infection (38). ICP0 and ICP27, acting immediately after the viral protein synthesis onset, constitute a secondary line of defense (9, 26, 39, 40). The importance of the αvβ3-integrin defense mechanism is underscored by the observation that it was targeted by ICP0. Silencing of β3-integrin enabled the ΔICP0 mutant to better replicate, particularly when even the TLR2 defense arm was absent. The counteraction of the integrin defense by ICP0 was unexpected but not surprising. The multifunctional protein ICP0 operates in both the nucleus and cytoplasm of the infected cell. In the nucleus, by degrading promyelocytic leukemia nuclear bodies and dispersing nuclear domain 10 bodies, ICP0 blocks exogenous IFN from interfering with viral replication (41). In the cytoplasm, ICP0 interacts with several cellular proteins (9, 11, 12, 42), inhibits IRF3 dimerization, and promotes degradation of the MYD88 adaptor (11, 26).
Several considerations justify the conclusion that αvβ3-integrin is an important non-TLR PRR for HSV and possibly for a number of other viral and bacterial pathogens. Integrins are evolutionarily ancient and highly conserved. They recognize specific molecular patterns in many viral and bacterial pathogens (43, 44). They exhibit signaling activities that lead to a polarized cytokine production. Monocyte integrins—e.g., αM (CD11b)—are already considered as non-TLRs PRRs and regulators of the innate response (4, 45). Importantly, a number of viruses, including the herpesviruses cytomegalovirus, Epstein–Barr virus and Kaposi’s sarcoma herpesvirus, adenoviruses, reoviruses, HIV, and hepatitis C virus, make use of integrins, in most cases as portals of entry into cell, and induce a strong innate response (30–32, 43, 46–49). With respect to bacteria, β3-integrin delivers bacterial lipopeptide to TLR2, inducing inflammatory cytokines; β-integrins physically interact with bacterial pathogens (20, 44).
Materials and Methods
Detailed methods are available in SI Materials and Methods.
K562 Cells.
The wt-K562 (αvβ3-integrin−) and their αvβ3-integrin+ stable transformants were described (28, 29).
β3-Integrin Silencing, Western Blot (IB), and Cell-ELISA of Silencing.
Lentiviruses expressing two different sh-RNAs to β3-integrin (ITGB3) were produced by transfection of pFuGW-ITGB3-1 or pFuGW-ITGB3-2 and additional plasmids into 293T cells, according to ref, 20. The control mock-silenced cells were generated by plasmid pFuGW-control. αvβ3-integrin cell surface expression was measured by cell-ELISA (29).
Infection.
R8102 carries Lac-Z under the α27 immediate-early promoter (21). R7910 carries the deletion of the α0 gene (ΔICP0) (25). R8102 infection was revealed at 6 h (21). For virus yield determinations, titrations were performed in Vero [HSV-1(F)] or U2OS (R7910) cells.
Reverse Transcription and q-RT-PCR.
Total RNA was purified with Total RNA Isolation kit (Macherey-Nagel) and reverse transcribed with high-capacity cDNA reverse transcription kit (Applied Biosystems). Real-time PCR primers were the inventoried TaqMan gene expression assays (Applied Biosystems) (see list in Table S1).
Cytokine Quantification.
IFN-β and human IL10 were detected by VeriKine kit (Pestka Biomedical Laboratories, PBL IFN Source) or Elisa kit (Thermo Scientific, Pierce) from infected cell media.
BIAcore.
Kinetic measurements of the interaction between soluble gH/gL and soluble αvβ3-integrin purified from 293-B3 AVAP cells (a gift of Stephen Nishimura, University of California, San Francisco, CA) were as described (50). MAb LS-C44264 to AP (LifeSpan BioScience) was used to capture the integrins on the surface of the sensor chip.
Supplementary Material
Acknowledgments
We thank A. Zychlinsky, J. L. de Diego, E. Kurt-Jones, S. Nishimura, and B. Scott for cells or reagents. G.C.F. was supported by Investigator Grants from AIRC (Associazione Italiana per la Ricerca sul Cancro) Milan, by Fondazione del Monte di Bologna e Ravenna, by Roberto and Cornelia Pallotti Funds from the Department of Experimental Pathology, by Programmi di ricerca di Rilevante Interesse Nazionale (PRIN) projects from Italian Ministry for University and Research, and by University of Bologna Ricerca Fondamentale Orientata (RFO). L.M.H.-F. and L.S.C. were supported by National Institutes of Health Public Health Service Grant DE016669 (to L.M.H.-F.) from the National Institute of Dental and Craniofacial Research.
Footnotes
The authors declare no conflict of interest.
This article is a PNAS Direct Submission.
This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1212597109/-/DCSupplemental.
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