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. 2011 Feb 25;11(7):1287–1299. doi: 10.1002/pmic.201000495

Table 1.

The 43 identified putative novel chloroplast proteins

AGI code Functional annotation (TAIR9) TargetP ATP/PurB Eu3+ Chloroplast 2010
AT1G06510 Unknown protein C + WP
AT1G15730a,b) PRL1-interacting factor L, putative C + WP, CF
AT1G19920a) ATP sulfurylase C +
AT1G21500a) Chloroplast Unknown protein 1 C +
AT1G22410 2-Dehydro-3-deoxyphosphoheptonate aldolase C + + WP, SAA
AT1G23800 ALDH2B7; 3-chloroallyl aldehyde dehydrogenase (NAD) M +
AT1G30510a) ATRFNR2; root FNR 2) C +
AT1G36280a,b) Adenylosuccinate lyase C + WP
AT1G42430 Chloroplast Unknown protein 1 O + +
AT1G54310 RNA binding M +
AT1G60000a,b) 29 kDa ribonucleoprotein C + +
AT1G66530 Arginyl-tRNA synthetase, putative O +
AT1G71720b) S1 RNA-binding domain-containing protein C +
AT1G71920a) Histidinol-phosphate aminotransferase, putative C +
AT1G74920 ALDH10A8; 3-chloroallyl aldehyde dehydrogenase O +
AT1G76690 OPR2; 12-oxophytodienoate reductase O +
AT1G77122 Unknown protein C + +
AT1G77670a) Aminotransferase class I and II family protein M +
AT1G77930 DNAJ heat shock N-terminal domain-containing protein C + WP
AT1G79530c) GAPCP-1; glyceraldehyde-3-phosphate dehydrogenase C + WP, LFA
AT1G79870a) Oxidoreductase family protein O +
AT2G17240 Unknown protein C +
AT2G17340 Pantothenate kinase-related O +
AT2G21350 RNA binding C +
AT2G23390 Acyl-CoA N-acyltransferase M +
AT2G25870 Haloacid dehalogenase-like family protein M +
AT2G31890b) ATRAP; putative RNA binding domain C +
AT2G44760 Unknown protein C +
AT3G02900a) Unknown protein C +
AT3G04650 FAD-dependent oxidoreductase C +
AT3G25110 AtFaTA; Arabidopsis FatA acyl-ACP thioesterase C +
AT3G29185a) Unknown protein C + +
AT3G55870 Anthranilate synthase, α subunit, putative S +
AT3G57810 OTU-like cysteine protease family protein M +
AT3G59040 Pentatricopeptide (PPR) repeat-containing protein C +
AT4G27070a) TSB2; tryptophan synthase β subunit 2 C + + WP
AT5G02590 Tetratricopeptide (TPR) repeat-containing protein C +
AT5G14460 Pseudouridine synthase/transporter C +
AT5G15390 tRNA/rRNA methyltransferase (SpoU) family protein C +
AT5G22620a,b) Phosphoglycerate mutase family protein C + LAA
AT5G52010 Zinc finger (C2H2 type) family protein C +
AT5G62990 Embryo defective 1692 (ubiquitin thiolesterase) C + +
AT5G64840b) ATGCN5; A. thaliana general control non-repressible 5 C +

AGI codes of all proteins together with functional annotation from TAIR9 and TargetP prediction are shown. C, chloroplast; M, mitochondrion; S, secretory system; O, other localization. Whether or not a protein was identified with the ATP/PurB and/or Eu3+ strategy is depicted by + or −, respectively. When an identified protein exhibits a certain phenotype according to the Chloroplast 2010 database, this is indicated: WP, Whole Plant Morphology; CF, Chlorophyll Fluorescence; SAA, Seed Amino Acid; LFA, Leaf Fatty Acid; LAA, Leaf Amino Acid. Proteins that have been selected for YFP localization study are written in bold. Proteins that have been reported to be localized in the chloroplast during preparation of this publication are labelled by superscript lowercase letters, which are explained at the bottom of the table.

a)

Protein is present in the AT_CHLORO database.

b)

Protein is chloroplast localized according to the recent PPDB update.

c)

Chloroplast-localized according to 71.