Abstract
Simian virus 40 (SV40) replicating chromosomes were extracted from nuclei of infected cells. The chromosomes in the extract were resolved on neutral sucrose gradients, and the extent of replication of the DNA in the chromosome peaks was determined. The extract, in combination with cytosol factors and the appropriate precursors, supports the continued replication of viral DNA. The products of the incubation were mature form I DNA and molecules (after deproteinization) with sedimentation coefficients, in neutral sucrose, of 22S and 29S. The results of our analysis of this system indicate the following. (i) The 22S molecule, which has been described by previous workers, is a relaxed, replicating molecule and is an artifact of the in vitro system. (ii) When the in vitro synthesis is performed at optimal ionic strength (150 mM potassium acetate), the artifactual 22S molecule does not appear. (iii) Late replicative intermediates do accumulate in vivo and in vitro. The major late form accumulated is 91% completed. (iv) The replicating chromosomes can be resolved into two distinct peaks on neutral sucrose gradients. The molecules in these peaks differ in extent of replication. (v) The nuclear extraction procedure preferentially extracts early replicating chromosomes. The relevance of these data to the problem of SV40 and cellular chromosome replication and termination is described.
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- Berger H., Jr Studies on nascent DNA in mouse myeloma. Cell. 1974 May;2(1):23–30. doi: 10.1016/0092-8674(74)90004-x. [DOI] [PubMed] [Google Scholar]
- CAIRNS J. The bacterial chromosome and its manner of replication as seen by autoradiography. J Mol Biol. 1963 Mar;6:208–213. doi: 10.1016/s0022-2836(63)80070-4. [DOI] [PubMed] [Google Scholar]
- Champoux J. J., Dulbecco R. An activity from mammalian cells that untwists superhelical DNA--a possible swivel for DNA replication (polyoma-ethidium bromide-mouse-embryo cells-dye binding assay). Proc Natl Acad Sci U S A. 1972 Jan;69(1):143–146. doi: 10.1073/pnas.69.1.143. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Champoux J. J. Evidence for an intermediate with a single-strand break in the reaction catalyzed by the DNA untwisting enzyme. Proc Natl Acad Sci U S A. 1976 Oct;73(10):3488–3491. doi: 10.1073/pnas.73.10.3488. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chen M. C., Birkenmeier E., Salzman N. P. Simian virus 40 DNA replication: characterization of gaps in the termination region. J Virol. 1976 Feb;17(2):614–621. doi: 10.1128/jvi.17.2.614-621.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Christiansen G., Griffith J. Salt and divalent cations affect the flexible nature of the natural beaded chromatin structure. Nucleic Acids Res. 1977 Jun;4(6):1837–1851. doi: 10.1093/nar/4.6.1837. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cremisi C., Pignatti P. F., Croissant O., Yaniv M. Chromatin-like structures in polyoma virus and simian virus 10 lytic cycle. J Virol. 1975 Jan;17(1):204–211. doi: 10.1128/jvi.17.1.204-211.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
- DePamphilis M. L., Beard P., Berg P. Synthesis of Superhelical Simian Virus 40 Deoxyribonucleic Acid in Cell Lysates*. J Biol Chem. 1975 Jun 10;250(11):4340–4347. [PubMed] [Google Scholar]
- Edenberg H. J., Huberman J. A. Eukaryotic chromosome replication. Annu Rev Genet. 1975;9:245–284. doi: 10.1146/annurev.ge.09.120175.001333. [DOI] [PubMed] [Google Scholar]
- Edenberg H. J., Waqar M. A., Huberman J. A. Subnuclear systems for synthesis of simian virus 40 DNA in vitro. Proc Natl Acad Sci U S A. 1976 Dec;73(12):4392–4396. doi: 10.1073/pnas.73.12.4392. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fareed G. C., Garon G. F., Salzman N. P. Origin and direction of simian virus 40 deoxyribonucleic acid replication. J Virol. 1972 Sep;10(3):484–491. doi: 10.1128/jvi.10.3.484-491.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fareed G. C., McKerlie M. L., Salzman N. P. Characterization of Simian virus 40 DNA component II during viral DNA replication. J Mol Biol. 1973 Feb 25;74(2):95–111. doi: 10.1016/0022-2836(73)90101-0. [DOI] [PubMed] [Google Scholar]
- Francke B. Cell-free synthesis of herpes simplex virus DNA: conditions for optimal synthesis. Biochemistry. 1977 Dec 27;16(26):5655–5664. doi: 10.1021/bi00645a001. [DOI] [PubMed] [Google Scholar]
- Goff S. P., Berg P. Structure and formation of circular dimers of simian virus 40 DNA. J Virol. 1977 Oct;24(1):295–302. doi: 10.1128/jvi.24.1.295-302.1977. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Griffith J. D. Chromatin structure: deduced from a minichromosome. Science. 1975 Mar 28;187(4182):1202–1203. doi: 10.1126/science.187.4182.1202. [DOI] [PubMed] [Google Scholar]
- Huberman J. A., Horwitz H. Discontinuous DNA synthesis in mammalian cells. Cold Spring Harb Symp Quant Biol. 1974;38:233–238. doi: 10.1101/sqb.1974.038.01.026. [DOI] [PubMed] [Google Scholar]
- Jaenisch R., Levine A. J. DNA replication of SV40-infected cells. VII. Formation of SV40 catenated and circular dimers. J Mol Biol. 1973 Jan 10;73(2):199–212. doi: 10.1016/0022-2836(73)90323-9. [DOI] [PubMed] [Google Scholar]
- Jaenisch R., Mayer A., Levine A. Replicating SV40 molecules containing closed circular template DNA strands. Nat New Biol. 1971 Sep 15;233(37):72–75. doi: 10.1038/newbio233072a0. [DOI] [PubMed] [Google Scholar]
- Keller W., Wendel I. Stepwise relaxation of supercoiled SV40 DNA. Cold Spring Harb Symp Quant Biol. 1975;39(Pt 1):199–208. doi: 10.1101/sqb.1974.039.01.026. [DOI] [PubMed] [Google Scholar]
- Le Blanc D. J., Singer M. F. Simian virus 40 DNA replication in nuclear monolayers. J Virol. 1976 Oct;20(1):78–85. doi: 10.1128/jvi.20.1.78-85.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Levine A. J., Kang H. S., Billheimer F. E. DNA replication in SV40 infected cells. I. Analysis of replicating SV40 DNA. J Mol Biol. 1970 Jun 14;50(2):549–568. doi: 10.1016/0022-2836(70)90211-1. [DOI] [PubMed] [Google Scholar]
- Mayer A., Levine A. J. DNA replication in SV40-infected cells. 8. The distribution of replicating molecules at different stages of replication in SV40-infected cells. Virology. 1972 Nov;50(2):328–338. doi: 10.1016/0042-6822(72)90384-4. [DOI] [PubMed] [Google Scholar]
- Meinke W., Goldstein D. A. Studies on the structure and formation of polyoma DNA replicative intermediates. J Mol Biol. 1971 Nov 14;61(3):543–563. doi: 10.1016/0022-2836(71)90064-7. [DOI] [PubMed] [Google Scholar]
- Salzman N. P., Sebring E. D., Radonovich M. Unwinding of parental strands during simian virus 40 DNA replication. J Virol. 1973 Oct;12(4):669–676. doi: 10.1128/jvi.12.4.669-676.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Seale R. L., Simpson R. T. Effects of cycloheximide on chromatin biosynthesis. J Mol Biol. 1975 May 25;94(3):479–501. doi: 10.1016/0022-2836(75)90216-8. [DOI] [PubMed] [Google Scholar]
- Sebring E. D., Kelly T. J., Jr, Thoren M. M., Salzman N. P. Structure of replicating simian virus 40 deoxyribonucleic acid molecules. J Virol. 1971 Oct;8(4):478–490. doi: 10.1128/jvi.8.4.478-490.1971. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Seidman M. M., Garon C. F., Salzman N. P. The relationship of SV40 replicating chromosomes to two forms of the non-replicating SV40. Nucleic Acids Res. 1978 Aug;5(8):2877–2893. doi: 10.1093/nar/5.8.2877. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Su R. T., DePamphilis M. L. In vitro replication of simian virus 40 DNA in a nucleoprotein complex. Proc Natl Acad Sci U S A. 1976 Oct;73(10):3466–3470. doi: 10.1073/pnas.73.10.3466. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tapper D. P., DePamphilis M. L. Discontinuous DNA replication: accumulation of Simian virus 40 DNA at specific stages in its replication. J Mol Biol. 1978 Apr 15;120(3):401–422. doi: 10.1016/0022-2836(78)90427-8. [DOI] [PubMed] [Google Scholar]
- Varshavsky A. J., Nedospasov S. A., Schmatchenko V. V., Bakayev V. V., Chumackov P. M., Georgiev G. P. Compact form of SV40 viral minichromosome is resistant to nuclease: possible implications for chromatin structure. Nucleic Acids Res. 1977 Oct;4(10):3303–3325. doi: 10.1093/nar/4.10.3303. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wang J. C. Interlocked DNA rings. II. Physicochemical studies. Biopolymers. 1970;9(4):489–502. doi: 10.1002/bip.1970.360090410. [DOI] [PubMed] [Google Scholar]
- Weber L. A., Hickey E. D., Maroney P. A., Baglioni C. Inhibition of protein synthesis by Cl-. J Biol Chem. 1977 Jun 10;252(11):4007–4010. [PubMed] [Google Scholar]
- Winnacker E. L., Magnusson G., Reichard P. Replication of polyoma DNA in isolated nuclei. I. Characterization of the system from mouse fibroblast 3T6 cells. J Mol Biol. 1972 Dec 30;72(3):523–537. doi: 10.1016/0022-2836(72)90172-6. [DOI] [PubMed] [Google Scholar]