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. 1978 Oct;28(1):403–407. doi: 10.1128/jvi.28.1.403-407.1978

Restriction endonuclease mapping of bacteriophage phi105 and closely related temperate Bacillus subtilis bacteriophages rho10 and rho14.

J B Perkins, C D Zarley, D H Dean
PMCID: PMC354280  PMID: 100613

Abstract

Cleavage maps of the three similar Bacillus subtilis temperate bacteriophages, phi105, rho10, and rho14, were constructed by partial digestion analysis utilizing the restriction endonuclease EcoRI. Comparison of the topography of these maps indicates that all phage DNAs posses cohesive ends and a number of EcoRI restriction sites; the fragments are conserved, and the estimated base substitution/nucleotide divergence between these phages is 0.03 to 0.07 based on conserved fragments or between 0.03 and 0.11 based on conserved cleavage sites. These lines of evidence indicate that phi105, rho10, and rho14 are closely related. Double-enzyme digestion analysis reveals that rho14 DNA has unique SalGI and BglII restriction sites and phi105 DNA has a unique SalGI restriction site, making these phages possible cloning vectors for B. subtilis.

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Selected References

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  1. Chow L. T., Davidson N. Electron microscope study of the structures of the Bacillus subtilis prophages, SPO2 and phi105. J Mol Biol. 1973 Apr 5;75(2):257–264. doi: 10.1016/0022-2836(73)90019-3. [DOI] [PubMed] [Google Scholar]
  2. Dean D. H., Orrego J. C., Hutchison K. W., Halvorson H. O. New temperate bacteriophage for Bacillus subtilis, rho 11. J Virol. 1976 Nov;20(2):509–519. doi: 10.1128/jvi.20.2.509-519.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Flock J. I. Deletion mutants of temperate Bacillus subtilis bacteriophage phi105. Mol Gen Genet. 1977 Oct 24;155(3):241–247. doi: 10.1007/BF00272803. [DOI] [PubMed] [Google Scholar]
  4. Godson G. N. Evolution of phi chi 174. II. A cleavage map of the G4 phage genome and comparison with the cleavage map of phi chi 174. Virology. 1975 Feb;63(2):320–325. doi: 10.1016/0042-6822(75)90306-2. [DOI] [PubMed] [Google Scholar]
  5. Godson G. N. Evolution of phiX174 III. Restriction map of S13 and its alignment with that of phiX174. Virology. 1976 Dec;75(2):263–280. doi: 10.1016/0042-6822(76)90027-1. [DOI] [PubMed] [Google Scholar]
  6. Haggerty D. M., Scheif R. F. Location in bacteriophage lamdba DNA of cleavage sites of the site-specific endonuclease from Bacillus amyloliquefaciens H. J Virol. 1976 May;18(2):659–663. doi: 10.1128/jvi.18.2.659-663.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Hayashi M. N., Hayashi M. Fragment maps of phiX-174 replicative DNA produced by restriction enzymes from haemophilus aphirophilus and haemophilus influenzae H-I. J Virol. 1974 Nov;14(5):1142–1151. doi: 10.1128/jvi.14.5.1142-1151.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Helling R. B., Goodman H. M., Boyer H. W. Analysis of endonuclease R-EcoRI fragments of DNA from lambdoid bacteriophages and other viruses by agarose-gel electrophoresis. J Virol. 1974 Nov;14(5):1235–1244. doi: 10.1128/jvi.14.5.1235-1244.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Horiuchi K., Vovis G. F., Enea V., Zinder N. D. Cleavage map of bacteriophage f1: location of the Escherichia coli B-specific modification sites. J Mol Biol. 1975 Jun 25;95(2):147–165. doi: 10.1016/0022-2836(75)90388-5. [DOI] [PubMed] [Google Scholar]
  10. Ito J., Kawamura F., Yanofsky S. Analysis of phi 29 and phi 15 genomes by bacterial restriction endonucleases, EcoR1 and Hpal. Virology. 1976 Mar;70(1):37–51. doi: 10.1016/0042-6822(76)90234-8. [DOI] [PubMed] [Google Scholar]
  11. Lee A. S., Sinsheimer R. L. A cleavage map of bacteriophage phiX174 genome. Proc Natl Acad Sci U S A. 1974 Jul;71(7):2882–2886. doi: 10.1073/pnas.71.7.2882. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Rhoades M. Cleavage of T5 DNA by the Escherichia coli R-I restriction endonuclease. Virology. 1975 Mar;64(1):170–179. doi: 10.1016/0042-6822(75)90089-6. [DOI] [PubMed] [Google Scholar]
  13. Roberts R. J. Restriction endonucleases. CRC Crit Rev Biochem. 1976 Nov;4(2):123–164. doi: 10.3109/10409237609105456. [DOI] [PubMed] [Google Scholar]
  14. Rutberg L. Mapping of a temperate bacteriophage active on Bacillus subtilis. J Virol. 1969 Jan;3(1):38–44. doi: 10.1128/jvi.3.1.38-44.1969. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Rutberg L., Rutberg B. Characterization of infectious deoxyribonucleic acid from temperature Bacillus subtilis bacteriophage phi105. J Virol. 1970 May;5(5):604–608. doi: 10.1128/jvi.5.5.604-608.1970. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Scher B. M., Dean D. H., Garro A. J. Fragmentation of Bacillus bacteriophage phi105 DNA by complementary single-stranded DNA in the cohesive ends of the molecule. J Virol. 1977 Aug;23(2):377–383. doi: 10.1128/jvi.23.2.377-383.1977. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Scher B. M., Law M. F., Garro A. J. Correlated genetic and EcoRI cleavage map of Bacillus subtilis bacteriophage phi105 DNA. J Virol. 1978 Oct;28(1):395–402. doi: 10.1128/jvi.28.1.395-402.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Studies on bacteriophage fd DNA I. A cleavage map of the fd genome. J Mol Biol. 1975 Jun 15;95(1):21–31. [PubMed] [Google Scholar]
  19. Tanaka T., Weisblum B. Construction of a colicin E1-R factor composite plasmid in vitro: means for amplification of deoxyribonucleic acid. J Bacteriol. 1975 Jan;121(1):354–362. doi: 10.1128/jb.121.1.354-362.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Thomas M., Davis R. W. Studies on the cleavage of bacteriophage lambda DNA with EcoRI Restriction endonuclease. J Mol Biol. 1975 Jan 25;91(3):315–328. doi: 10.1016/0022-2836(75)90383-6. [DOI] [PubMed] [Google Scholar]
  21. Upholt W. B. Estimation of DNA sequence divergence from comparison of restriction endonuclease digests. Nucleic Acids Res. 1977;4(5):1257–1265. doi: 10.1093/nar/4.5.1257. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Van Den Hondel C. A., Schoenmakers J. G. Cleavage maps of the filamentous bacteriophages M13, fd, fl, and ZJ/2. J Virol. 1976 Jun;18(3):1024–1039. doi: 10.1128/jvi.18.3.1024-1039.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Wilson G. A., Williams M. T., Baney H. W., Young F. E. Characterization of temperate bacteriophages of Bacillus subtilis by the restriction endonuclease EcoRI: evidence for three different temperate bacteriophages. J Virol. 1974 Oct;14(4):1013–1016. doi: 10.1128/jvi.14.4.1013-1016.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. von Gabain A., Hayward G. S., Bujard H. Physical mapping of the HindIII, EcoRI, Sal and Sma restriction endonuclease cleavage fragments from bacteriophage T5 DNA. Mol Gen Genet. 1976 Feb 2;143(3):279–290. doi: 10.1007/BF00269404. [DOI] [PubMed] [Google Scholar]

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