Skip to main content
Journal of Virology logoLink to Journal of Virology
. 1974 Dec;14(6):1503–1514. doi: 10.1128/jvi.14.6.1503-1514.1974

Nature of φX174 Linear DNA from a DNA Ligase-Defective Host

Lois K Miller a,1, Robert L Sinsheimer a
PMCID: PMC355681  PMID: 4610189

Abstract

Linear DNAs have been prepared from φX phage and from φX RF II (double-stranded circular form of φX DNA, formed during infection and nicked in one or both strands) molecules derived from infection at the restrictive temperature of Escherichia coli ts7, a host mutant with a temperature-sensitive DNA ligase activity. The linear DNA from these phages can be circularized by annealing with fragments of φX RF DNA produced by the Haemophilus influenzae restriction nuclease. The circularization experiment indicated that the site of breakage of the linear phage DNAs is not unique nor confined to a particular region of the genome. These linear DNAs were less than 0.1% as infective as circular phage DNA. The linear, positive strand of late RF II DNA, however, is uniquely nicked in the region of the φX genome corresponding to cistron A. Although a low level of infectivity is associated with the linear DNA derived from late RF II, this infectivity appears to be a result of the association of linear positive and linear negative strands during the infectivity assay.

Full text

PDF
1503

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Baas P. D., Jansz H. S. Phi X174 heteroduplexes: preparation and some biological and physical properties. Proc K Ned Akad Wet C. 1971;74(2):191–206. [PubMed] [Google Scholar]
  2. Baas P. D., Jansz H. S. PhiX174 replicative form DNA replication, origin and direction. J Mol Biol. 1972 Feb 14;63(3):569–576. doi: 10.1016/0022-2836(72)90448-2. [DOI] [PubMed] [Google Scholar]
  3. Chen C. Y., Hutchison C. A., 3rd, Edgell M. H. Isolation and genetic localization of three phi-X174 promoter regions. Nat New Biol. 1973 Jun 20;243(129):233–236. doi: 10.1038/newbio243233a0. [DOI] [PubMed] [Google Scholar]
  4. Dumas L. B., Darby G., Sinsheimer R. L. The replication of bacteriophage phi X174 DNA in vitro. Temperature effects on repair synthesis and displacement synthesis. Biochim Biophys Acta. 1971 Jan 28;228(2):407–422. [PubMed] [Google Scholar]
  5. FRASER D., JERREL E. A. The amino acid composition of T3 bacteriophage. J Biol Chem. 1953 Nov;205(1):291–295. [PubMed] [Google Scholar]
  6. Francke B., Ray D. S. Formation of the parental replicative form DNA of bacteriophage phi-X174 and initial events in its replication. J Mol Biol. 1971 Nov 14;61(3):565–586. doi: 10.1016/0022-2836(71)90065-9. [DOI] [PubMed] [Google Scholar]
  7. GUTHRIE G. D., SINSHEIMER R. L. Observations on the infection of bacterial protoplasts with the deoxyribonucleic acid of bacteriophage phi X174. Biochim Biophys Acta. 1963 Jun 25;72:290–297. [PubMed] [Google Scholar]
  8. HANAWALT P. C. Involvement of synthesis of RNA in thymineless death. Nature. 1963 Apr 20;198:286–286. doi: 10.1038/198286a0. [DOI] [PubMed] [Google Scholar]
  9. Iwaya M., Eisenberg S., Bartok K., Denhardt D. T. Mechanism of replication of single-stranded PhiX174 DNA. VII. Circularization of the progeny viral strand. J Virol. 1973 Oct;12(4):808–818. doi: 10.1128/jvi.12.4.808-818.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Jovin T. M., Englund P. T., Bertsch L. L. Enzymatic synthesis of deoxyribonucleic acid. XXVI. Physical and chemical studies of a homogeneous deoxyribonucleic acid polymerase. J Biol Chem. 1969 Jun 10;244(11):2996–3008. [PubMed] [Google Scholar]
  11. Knippers R., Sinsheimer R. L. Process of infection with bacteriophage phiX174. XX. Attachment of the parental DNA of bacteriophage phiX174 to a fast-sedimenting cell component. J Mol Biol. 1968 May 28;34(1):17–29. doi: 10.1016/0022-2836(68)90231-3. [DOI] [PubMed] [Google Scholar]
  12. Komano T., Knippers R., Sinsheimer R. L. The process of infection with bacteriophage phi-X174. XXII. Synthesis of progeny single-stranded DNA. Proc Natl Acad Sci U S A. 1968 Mar;59(3):911–916. doi: 10.1073/pnas.59.3.911. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Lindqvist B. H., Sinsheimer R. L. The process of infection with bacteriophage phi X174. XVI. Synthesis of the replicative form and its relationship to viral single-stranded DNA synthesis. J Mol Biol. 1968 Mar 14;32(2):285–302. doi: 10.1016/0022-2836(68)90010-7. [DOI] [PubMed] [Google Scholar]
  14. Modrich P., Lehman I. R. Enzymatic characterization of a mutant of Escherichia coli with an altered DNA ligase. Proc Natl Acad Sci U S A. 1971 May;68(5):1002–1005. doi: 10.1073/pnas.68.5.1002. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Newbold J. E., Sinsheimer R. L. The process of infection with bacteriophage phiX174. XXXI. Abortive infection at low temperatures. J Mol Biol. 1970 Apr 14;49(1):23–47. doi: 10.1016/0022-2836(70)90374-8. [DOI] [PubMed] [Google Scholar]
  16. Pauling C., Hamm L. Properties of a temperature-sensitive radiation-sensitive mutant of Escherichia coli. Proc Natl Acad Sci U S A. 1968 Aug;60(4):1495–1502. doi: 10.1073/pnas.60.4.1495. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Pauling C., Hamm L. Properties of a temperature-sensitive, radiation-sensitive mutant of Escherichia coli. II. DNA replication. Proc Natl Acad Sci U S A. 1969 Dec;64(4):1195–1202. doi: 10.1073/pnas.64.4.1195. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Schekman R. W., Iwaya M., Bromstrup K., Denhardt D. T. The mechanism of replication of phi X174 single-stranded DNA. 3. An enzymic study of the structure of the replicative form II DNA. J Mol Biol. 1971 Apr 28;57(2):177–199. doi: 10.1016/0022-2836(71)90340-8. [DOI] [PubMed] [Google Scholar]
  19. Schekman R. W., Ray D. S. Polynucleotide ligase and phiX174 single strand synthesis. Nat New Biol. 1971 Jun 9;231(23):170–173. doi: 10.1038/newbio231170a0. [DOI] [PubMed] [Google Scholar]
  20. Schröder C., Kaerner H. -C. Infectivity to Escherichia coli spheroplasts of linear phiX174 DNA strands derived from the replicative form (RFII) of phiX DNA. FEBS Lett. 1971 Nov 15;19(1):38–44. doi: 10.1016/0014-5793(71)80600-2. [DOI] [PubMed] [Google Scholar]
  21. Smith H. O., Wilcox K. W. A restriction enzyme from Hemophilus influenzae. I. Purification and general properties. J Mol Biol. 1970 Jul 28;51(2):379–391. doi: 10.1016/0022-2836(70)90149-x. [DOI] [PubMed] [Google Scholar]

Articles from Journal of Virology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES