Abstract
In the title compound, C16H17NO4S2, the 2H-chromene ring system is nearly planar, with a maximum deviation of 0.070 (1) Å, and the morpholine ring adopts a chair conformation; the bond-angle sum for its N atom is 357.9°. The dihedral angle between the the 2H-chromene ring and the best plane through the morpholine ring is 89.09 (6)°. An intramolecular C—H⋯S hydrogen bond occurs. In the crystal, C—H⋯O hydrogen bonds generate R 2 2(8) rings and π–π interactions occur between fused benzene rings of the chromene system [shortest centroid–centroid distance = 3.5487 (8) Å].
Related literature
For a related structure, background to coumarins and details of the synthesis of the title compound, see: Kumar et al. (2012 ▶).
Experimental
Crystal data
C16H17NO4S2
M r = 351.43
Triclinic,
a = 7.0026 (5) Å
b = 7.9939 (6) Å
c = 14.8033 (11) Å
α = 75.433 (4)°
β = 86.642 (4)°
γ = 78.355 (4)°
V = 785.49 (10) Å3
Z = 2
Mo Kα radiation
μ = 0.36 mm−1
T = 296 K
0.24 × 0.20 × 0.12 mm
Data collection
Bruker SMART CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.770, T max = 1.000
13583 measured reflections
2725 independent reflections
2482 reflections with I > 2σ(I)
R int = 0.024
Refinement
R[F 2 > 2σ(F 2)] = 0.027
wR(F 2) = 0.073
S = 1.06
2725 reflections
208 parameters
H-atom parameters constrained
Δρmax = 0.21 e Å−3
Δρmin = −0.15 e Å−3
Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812051847/gw2129sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812051847/gw2129Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812051847/gw2129Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C14—H14⋯O6i | 0.93 | 2.55 | 3.4582 (19) | 166 |
| C17—H17B⋯O3ii | 0.96 | 2.57 | 3.386 (2) | 143 |
| C18—H18B⋯S2 | 0.97 | 2.55 | 3.1527 (14) | 120 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors thank the Universities Sophisticated Instrumental Centre, Karnatak University, Dharwad, for the CCD X-ray facilities, X-ray data collection, GCMS, IR, CHNS and NMR data. KMK is grateful to Karnatak Science College, Dharwad, for providing laboratory facilities.
supplementary crystallographic information
Comment
As part of our ongoing studies of coumarins (or 2H-chromen-2-ones) with possible biological activities (Kumar et al., 2012), we now describe the structure of (6-methoxy-2-oxo-2H-chromen-4-yl) methyl morpholine-4-carbodithioate.
The asymmetric unit of (6-methoxy-2-oxo-2H-chromen-4-yl)methyl morpholine-4-carbodithioate is shown in Fig. 1. The 2H-chromene ring system (O3/C8–C16) is essentially planar, with a maximum deviation of 0.070 (1) Å for atom C8 and the morpholine ring adopts a chair conformation: the bond-angle sum for its N7 atom is 357.9 Å. The dihedral angle between the 2H-chromene (O3/C8–C16) ring and the morpholine (N7/O5/C20–C23) ring is 89.09 (6)°. In the crystal structure, (Fig. 2), intermolecular C14—H14···O6 and C17B—H17B···O3 and intramolecular C18—H18B···S2 hydrogen bonds observed and also π–π interactions between fused benzene Cg(3) (C11–C16) rings of chromene [shortest centroid–centroid distance = 3.5487 (8) Å] further stabilize the crystal packing
Experimental
This compound was prepared according to the reported method (Kumar et al., 2012). Colourless needles of the title compound were grown from a mixed solution of EtOH / CHCl3(V/V = 1/1) by slow evaporation at room temperature. Colour: yellowish. Yield= 84%, m.p.481 K.
Refinement
All H atoms were positioned geometrically, with C—H = 0.93 Å for aromatic H, C—H = 0.97 Å for methylene H and C—H = 0.96 Å for methyl H,and refined using a riding model with Uiso(H) = 1.5Ueq(C) for methyl H and Uiso(H) = 1.2Ueq(C) for all other H.
Figures
Fig. 1.
The molecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level. Hydrogen atoms are shown as spheres of arbitrary radius.
Fig. 2.
The packing of molecules.
Crystal data
| C16H17NO4S2 | Z = 2 |
| Mr = 351.43 | F(000) = 368 |
| Triclinic, P1 | Dx = 1.486 Mg m−3 |
| Hall symbol: -P 1 | Melting point: 481 K |
| a = 7.0026 (5) Å | Mo Kα radiation, λ = 0.71073 Å |
| b = 7.9939 (6) Å | Cell parameters from 2725 reflections |
| c = 14.8033 (11) Å | θ = 2.7–25.0° |
| α = 75.433 (4)° | µ = 0.36 mm−1 |
| β = 86.642 (4)° | T = 296 K |
| γ = 78.355 (4)° | Plate, colourless |
| V = 785.49 (10) Å3 | 0.24 × 0.20 × 0.12 mm |
Data collection
| Bruker SMART CCD area-detector diffractometer | 2725 independent reflections |
| Radiation source: fine-focus sealed tube | 2482 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.024 |
| ω and φ scans | θmax = 25.0°, θmin = 2.7° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | h = −8→8 |
| Tmin = 0.770, Tmax = 1.000 | k = −9→9 |
| 13583 measured reflections | l = −17→17 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.027 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.073 | H-atom parameters constrained |
| S = 1.06 | w = 1/[σ2(Fo2) + (0.0403P)2 + 0.1479P] where P = (Fo2 + 2Fc2)/3 |
| 2725 reflections | (Δ/σ)max = 0.001 |
| 208 parameters | Δρmax = 0.21 e Å−3 |
| 0 restraints | Δρmin = −0.15 e Å−3 |
Special details
| Experimental. IR (KBr): 662 cm-1(C—S), 1233 cm-11 (C=S), 1032 cm-1(C—O), 842 cm-1 (C—N),1118 cm-1(C—O—C), 1703 cm-1(C=O). GCMS: m/e: 335. 1H NMR (400 MHz, CDCl3, \?, p.p.m.) 1.91 (m, 6H, Morpholine-CH2), 2.34 (s, 4H, Morpholine –CH2), 4.63 (d, 2H, Methylene-CH2),5.88(s, 1H, Ar—H), 6.39 (s, 1H, Ar—H), 7.08 (s, 1H, Ar—H), 7.12 (s, 1H, Ar—H). Elemental analysis for C16H17NO3S2: C, 57.21; H, 5.04; N, 4.11. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.20243 (5) | 0.57411 (5) | 0.13634 (2) | 0.03769 (12) | |
| S2 | 0.56769 (5) | 0.71727 (6) | 0.06898 (3) | 0.04523 (13) | |
| O3 | 0.11086 (15) | 0.92127 (12) | 0.39849 (7) | 0.0387 (2) | |
| O4 | 0.3416 (2) | 1.06890 (16) | 0.34092 (10) | 0.0637 (3) | |
| O5 | 0.05206 (16) | 0.92565 (15) | −0.20255 (7) | 0.0481 (3) | |
| O6 | −0.32490 (16) | 0.41563 (13) | 0.41094 (8) | 0.0478 (3) | |
| N7 | 0.25269 (16) | 0.75947 (14) | −0.03248 (8) | 0.0338 (3) | |
| C8 | 0.2732 (2) | 0.94051 (19) | 0.34374 (10) | 0.0423 (3) | |
| C9 | 0.3469 (2) | 0.80463 (19) | 0.29565 (10) | 0.0391 (3) | |
| H9 | 0.4639 | 0.8085 | 0.2627 | 0.047* | |
| C10 | 0.2545 (2) | 0.67253 (17) | 0.29619 (9) | 0.0316 (3) | |
| C11 | 0.0733 (2) | 0.66496 (16) | 0.34768 (8) | 0.0302 (3) | |
| C12 | 0.0084 (2) | 0.79116 (16) | 0.39807 (9) | 0.0322 (3) | |
| C13 | −0.1612 (2) | 0.79099 (18) | 0.45089 (9) | 0.0380 (3) | |
| H13 | −0.2017 | 0.8758 | 0.4846 | 0.046* | |
| C14 | −0.2691 (2) | 0.66436 (19) | 0.45309 (10) | 0.0396 (3) | |
| H14 | −0.3836 | 0.6639 | 0.4882 | 0.047* | |
| C15 | −0.2080 (2) | 0.53636 (17) | 0.40304 (9) | 0.0355 (3) | |
| C16 | −0.0384 (2) | 0.53634 (17) | 0.35082 (9) | 0.0336 (3) | |
| H16 | 0.0020 | 0.4508 | 0.3176 | 0.040* | |
| C17 | −0.2599 (2) | 0.2748 (2) | 0.36796 (13) | 0.0518 (4) | |
| H17A | −0.3539 | 0.1994 | 0.3787 | 0.078* | |
| H17B | −0.1370 | 0.2086 | 0.3939 | 0.078* | |
| H17C | −0.2448 | 0.3208 | 0.3020 | 0.078* | |
| C18 | 0.3358 (2) | 0.53685 (18) | 0.24300 (9) | 0.0353 (3) | |
| H18A | 0.3293 | 0.4206 | 0.2818 | 0.042* | |
| H18B | 0.4718 | 0.5408 | 0.2280 | 0.042* | |
| C19 | 0.34447 (19) | 0.69401 (16) | 0.04920 (9) | 0.0311 (3) | |
| C20 | 0.0686 (2) | 0.71676 (19) | −0.05329 (10) | 0.0407 (3) | |
| H20A | −0.0043 | 0.6857 | 0.0042 | 0.049* | |
| H20B | 0.0962 | 0.6156 | −0.0802 | 0.049* | |
| C21 | −0.0524 (2) | 0.8689 (2) | −0.11983 (11) | 0.0441 (4) | |
| H21A | −0.1690 | 0.8341 | −0.1351 | 0.053* | |
| H21B | −0.0923 | 0.9658 | −0.0901 | 0.053* | |
| C22 | 0.2181 (2) | 0.9831 (2) | −0.18091 (11) | 0.0497 (4) | |
| H22A | 0.1762 | 1.0806 | −0.1518 | 0.060* | |
| H22B | 0.2864 | 1.0260 | −0.2383 | 0.060* | |
| C23 | 0.3561 (2) | 0.8398 (2) | −0.11672 (10) | 0.0430 (3) | |
| H23A | 0.4142 | 0.7502 | −0.1491 | 0.052* | |
| H23B | 0.4600 | 0.8887 | −0.0989 | 0.052* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0381 (2) | 0.0462 (2) | 0.0334 (2) | −0.01826 (16) | 0.00258 (14) | −0.01081 (15) |
| S2 | 0.0298 (2) | 0.0622 (3) | 0.0451 (2) | −0.01602 (17) | −0.00144 (16) | −0.00997 (18) |
| O3 | 0.0470 (6) | 0.0347 (5) | 0.0383 (5) | −0.0103 (4) | −0.0010 (4) | −0.0142 (4) |
| O4 | 0.0665 (8) | 0.0560 (7) | 0.0859 (9) | −0.0322 (6) | 0.0105 (7) | −0.0352 (6) |
| O5 | 0.0433 (6) | 0.0585 (7) | 0.0405 (6) | −0.0172 (5) | −0.0066 (5) | −0.0014 (5) |
| O6 | 0.0432 (6) | 0.0412 (6) | 0.0627 (7) | −0.0158 (5) | 0.0115 (5) | −0.0164 (5) |
| N7 | 0.0285 (6) | 0.0383 (6) | 0.0351 (6) | −0.0111 (5) | 0.0005 (5) | −0.0066 (5) |
| C8 | 0.0440 (9) | 0.0426 (8) | 0.0438 (8) | −0.0140 (7) | −0.0039 (7) | −0.0118 (6) |
| C9 | 0.0347 (8) | 0.0430 (8) | 0.0414 (8) | −0.0098 (6) | 0.0002 (6) | −0.0118 (6) |
| C10 | 0.0328 (7) | 0.0316 (6) | 0.0278 (6) | −0.0024 (5) | −0.0047 (5) | −0.0045 (5) |
| C11 | 0.0343 (7) | 0.0283 (6) | 0.0254 (6) | −0.0030 (5) | −0.0039 (5) | −0.0032 (5) |
| C12 | 0.0397 (8) | 0.0283 (6) | 0.0274 (6) | −0.0052 (6) | −0.0052 (6) | −0.0044 (5) |
| C13 | 0.0457 (9) | 0.0344 (7) | 0.0323 (7) | −0.0020 (6) | 0.0026 (6) | −0.0107 (6) |
| C14 | 0.0400 (8) | 0.0397 (7) | 0.0356 (7) | −0.0049 (6) | 0.0065 (6) | −0.0067 (6) |
| C15 | 0.0372 (8) | 0.0307 (7) | 0.0361 (7) | −0.0076 (6) | −0.0006 (6) | −0.0029 (5) |
| C16 | 0.0397 (8) | 0.0279 (6) | 0.0331 (7) | −0.0042 (6) | 0.0001 (6) | −0.0090 (5) |
| C17 | 0.0464 (9) | 0.0387 (8) | 0.0733 (11) | −0.0102 (7) | −0.0034 (8) | −0.0174 (8) |
| C18 | 0.0342 (7) | 0.0351 (7) | 0.0344 (7) | −0.0033 (6) | −0.0012 (6) | −0.0072 (5) |
| C19 | 0.0292 (7) | 0.0295 (6) | 0.0366 (7) | −0.0051 (5) | 0.0034 (5) | −0.0127 (5) |
| C20 | 0.0337 (8) | 0.0456 (8) | 0.0436 (8) | −0.0170 (6) | −0.0039 (6) | −0.0041 (6) |
| C21 | 0.0327 (8) | 0.0516 (9) | 0.0454 (8) | −0.0084 (7) | −0.0024 (6) | −0.0068 (7) |
| C22 | 0.0481 (10) | 0.0533 (9) | 0.0456 (9) | −0.0225 (8) | −0.0038 (7) | 0.0023 (7) |
| C23 | 0.0342 (8) | 0.0559 (9) | 0.0381 (8) | −0.0149 (7) | 0.0036 (6) | −0.0061 (7) |
Geometric parameters (Å, º)
| S1—C19 | 1.7846 (13) | C13—C14 | 1.373 (2) |
| S1—C18 | 1.8107 (14) | C13—H13 | 0.9300 |
| S2—C19 | 1.6620 (14) | C14—C15 | 1.395 (2) |
| O3—C8 | 1.3682 (18) | C14—H14 | 0.9300 |
| O3—C12 | 1.3792 (16) | C15—C16 | 1.378 (2) |
| O4—C8 | 1.2083 (18) | C16—H16 | 0.9300 |
| O5—C21 | 1.4105 (19) | C17—H17A | 0.9600 |
| O5—C22 | 1.4136 (19) | C17—H17B | 0.9600 |
| O6—C15 | 1.3661 (17) | C17—H17C | 0.9600 |
| O6—C17 | 1.4134 (19) | C18—H18A | 0.9700 |
| N7—C19 | 1.3363 (17) | C18—H18B | 0.9700 |
| N7—C20 | 1.4662 (18) | C20—C21 | 1.499 (2) |
| N7—C23 | 1.4733 (18) | C20—H20A | 0.9700 |
| C8—C9 | 1.440 (2) | C20—H20B | 0.9700 |
| C9—C10 | 1.344 (2) | C21—H21A | 0.9700 |
| C9—H9 | 0.9300 | C21—H21B | 0.9700 |
| C10—C11 | 1.4453 (19) | C22—C23 | 1.504 (2) |
| C10—C18 | 1.4995 (18) | C22—H22A | 0.9700 |
| C11—C12 | 1.3909 (19) | C22—H22B | 0.9700 |
| C11—C16 | 1.4028 (19) | C23—H23A | 0.9700 |
| C12—C13 | 1.383 (2) | C23—H23B | 0.9700 |
| C19—S1—C18 | 103.85 (6) | O6—C17—H17C | 109.5 |
| C8—O3—C12 | 121.50 (11) | H17A—C17—H17C | 109.5 |
| C21—O5—C22 | 109.50 (12) | H17B—C17—H17C | 109.5 |
| C15—O6—C17 | 117.51 (12) | C10—C18—S1 | 111.36 (9) |
| C19—N7—C20 | 124.03 (11) | C10—C18—H18A | 109.4 |
| C19—N7—C23 | 120.79 (12) | S1—C18—H18A | 109.4 |
| C20—N7—C23 | 113.08 (11) | C10—C18—H18B | 109.4 |
| O4—C8—O3 | 117.00 (14) | S1—C18—H18B | 109.4 |
| O4—C8—C9 | 126.27 (15) | H18A—C18—H18B | 108.0 |
| O3—C8—C9 | 116.73 (12) | N7—C19—S2 | 124.57 (10) |
| C10—C9—C8 | 122.97 (14) | N7—C19—S1 | 112.68 (10) |
| C10—C9—H9 | 118.5 | S2—C19—S1 | 122.74 (8) |
| C8—C9—H9 | 118.5 | N7—C20—C21 | 111.40 (12) |
| C9—C10—C11 | 118.87 (13) | N7—C20—H20A | 109.3 |
| C9—C10—C18 | 120.67 (13) | C21—C20—H20A | 109.3 |
| C11—C10—C18 | 120.46 (12) | N7—C20—H20B | 109.3 |
| C12—C11—C16 | 118.41 (13) | C21—C20—H20B | 109.3 |
| C12—C11—C10 | 117.82 (12) | H20A—C20—H20B | 108.0 |
| C16—C11—C10 | 123.77 (12) | O5—C21—C20 | 111.41 (12) |
| O3—C12—C13 | 116.84 (12) | O5—C21—H21A | 109.3 |
| O3—C12—C11 | 121.63 (12) | C20—C21—H21A | 109.3 |
| C13—C12—C11 | 121.52 (13) | O5—C21—H21B | 109.3 |
| C14—C13—C12 | 119.35 (13) | C20—C21—H21B | 109.3 |
| C14—C13—H13 | 120.3 | H21A—C21—H21B | 108.0 |
| C12—C13—H13 | 120.3 | O5—C22—C23 | 112.76 (13) |
| C13—C14—C15 | 120.46 (13) | O5—C22—H22A | 109.0 |
| C13—C14—H14 | 119.8 | C23—C22—H22A | 109.0 |
| C15—C14—H14 | 119.8 | O5—C22—H22B | 109.0 |
| O6—C15—C16 | 124.29 (13) | C23—C22—H22B | 109.0 |
| O6—C15—C14 | 115.64 (13) | H22A—C22—H22B | 107.8 |
| C16—C15—C14 | 120.07 (13) | N7—C23—C22 | 110.63 (12) |
| C15—C16—C11 | 120.20 (12) | N7—C23—H23A | 109.5 |
| C15—C16—H16 | 119.9 | C22—C23—H23A | 109.5 |
| C11—C16—H16 | 119.9 | N7—C23—H23B | 109.5 |
| O6—C17—H17A | 109.5 | C22—C23—H23B | 109.5 |
| O6—C17—H17B | 109.5 | H23A—C23—H23B | 108.1 |
| H17A—C17—H17B | 109.5 |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C14—H14···O6i | 0.93 | 2.55 | 3.4582 (19) | 166 |
| C17—H17B···O3ii | 0.96 | 2.57 | 3.386 (2) | 143 |
| C18—H18B···S2 | 0.97 | 2.55 | 3.1527 (14) | 120 |
Symmetry codes: (i) −x−1, −y+1, −z+1; (ii) x, y−1, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: GW2129).
References
- Bruker (2001). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.
- Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
- Kumar, K. M., Kour, D., Kapoor, K., Mahabaleshwaraiah, N. M., Kotresh, O., Gupta, V. K. & Kant, R. (2012). Acta Cryst. E68, o878–o879. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2007). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812051847/gw2129sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812051847/gw2129Isup2.hkl
Supplementary material file. DOI: 10.1107/S1600536812051847/gw2129Isup3.cml
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


