Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Jan 16;69(Pt 2):o239. doi: 10.1107/S1600536813000317

1-Tosyl-4-[2-(trifluoro­meth­yl)benz­yl]piperazine

S Sreenivasa a,*, H C Anitha a, K E ManojKumar a, J Tonannavar b, Yenagi Jayashree b, P A Suchetan c, B S Palakshamurthy d
PMCID: PMC3569772  PMID: 23424518

Abstract

In the crystal structure of the title compound, C19H21F3N2O2S, the piperazine ring adopts a chair conformation. The dihedral angles between the mean plane of the piperazine ring and the tosyl and trifluoro­methyl­phenyl rings are 74.52 (3) and 68.30 (2)°, respectively. The sulfonamide N atom deviates from the plane defined by the three attached atoms by 0.327 (1) Å. The crystal structure is stabilized by weak C—H⋯π inter­actions.

Related literature  

For the synthesis, characterization and biological activity of piperazine and its derivatives, see: Gan et al. (2009a ,b )graphic file with name e-69-0o239-scheme1.jpg

Experimental  

Crystal data  

  • C19H21F3N2O2S

  • M r = 398.44

  • Triclinic, Inline graphic

  • a = 9.5044 (3) Å

  • b = 9.8389 (3) Å

  • c = 12.1473 (4) Å

  • α = 72.036 (1)°

  • β = 77.024 (1)°

  • γ = 62.384 (1)°

  • V = 952.96 (5) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.22 mm−1

  • T = 296 K

  • 0.28 × 0.26 × 0.24 mm

Data collection  

  • Bruker APEXII diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.942, T max = 0.950

  • 18514 measured reflections

  • 3359 independent reflections

  • 2981 reflections with I > 2σ(I)

  • R int = 0.023

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.042

  • wR(F 2) = 0.119

  • S = 1.08

  • 3359 reflections

  • 245 parameters

  • H-atom parameters constrained

  • Δρmax = 0.18 e Å−3

  • Δρmin = −0.53 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: APEX2 and SAINT-Plus (Bruker, 2009); data reduction: SAINT-Plus and XPREP (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813000317/gk2548sup1.cif

e-69-0o239-sup1.cif (25KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813000317/gk2548Isup2.hkl

e-69-0o239-Isup2.hkl (164.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813000317/gk2548Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg is the centroid of the benzene ring of the trifluoro­methyl­phenyl group (C1–C6).

D—H⋯A D—H H⋯A DA D—H⋯A
C11—H11ACg i 0.97 2.84 (1) 3.670 (2) 144

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank Dr S. C. Sharma, Vice Chancellor, Tumkur University, Tumkur, for his constant encouragement. JT thanks DST, New Delhi, for the SCXRD facility under a PURSE Grant (SR/S9/Z-23/2008/11, 2009) at USIC, Karnatak University.

supplementary crystallographic information

Comment

Numerous piperazine derivatives like aryl amide, sulfonamides, Mannich bases, Schiff bases, thiazolidinones, azetidinones, imidazolinones have shown a wide spectrum of biological activities viz. anti-inflammatory, antibacterial, antimalarial, anticonvulsant, antipyretic, antitumor, anthelmintics, analgesic, antidepressant, antifungal, antitubercular, anticancer, antidiabetic (Gan et al., 2009a,b). Keeping this in mind, we synthesized the title compound and here we report its crystal structure.

Experimental

A mixture of 1-tosylpiperazine (0.01 mmol), potassium carbonate (0.03 mmol) and 2-trifluoromethylbenzyl bromide (0.01 mmol) was added into dry acetonitrile (5 ml). The mixture was stirred at 85°C for 8 h. The reaction was monitored by TLC. Solvent was removed by vacuum distillation and the crude product obtained was purified by column chromatography using 230–400 silica gel and petroleum ether/ethyl acetate as eluent. Single crystals of the title compound were obtained from a mixture of petroleum ether/ethyl acetate (7:3) by slow evaporation technique.

Refinement

All H atoms were included in calculated positions with C—H bond distances 0.93–0.97 Å and refined in a riding model approximation with Uiso(H) = 1.5Ueq(Cmethyl) and Uĩso(H) = 1.2Ueq(C) for the remaining H atoms.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

Molecular packing of the title compound. C—H···π interactions are shown as dashed lines.

Crystal data

C19H21F3N2O2S F(000) = 416
Mr = 398.44 prism
Triclinic, P1 Dx = 1.389 Mg m3
Hall symbol: -P 1 Melting point: 455 K
a = 9.5044 (3) Å Mo Kα radiation, λ = 0.71073 Å
b = 9.8389 (3) Å Cell parameters from 3359 reflections
c = 12.1473 (4) Å θ = 1.8–25.0°
α = 72.036 (1)° µ = 0.22 mm1
β = 77.024 (1)° T = 296 K
γ = 62.384 (1)° Prism, colourless
V = 952.96 (5) Å3 0.28 × 0.26 × 0.24 mm
Z = 2

Data collection

Bruker APEXII diffractometer 2981 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.023
Graphite monochromator θmax = 25.0°, θmin = 1.8°
φ and ω scans h = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2009) k = −11→11
Tmin = 0.942, Tmax = 0.950 l = −14→14
18514 measured reflections 2981 standard reflections every 3359 reflections
3359 independent reflections intensity decay: 0.6%

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119 H-atom parameters constrained
S = 1.08 w = 1/[σ2(Fo2) + (0.0669P)2 + 0.2061P] where P = (Fo2 + 2Fc2)/3
3359 reflections (Δ/σ)max = 0.001
245 parameters Δρmax = 0.18 e Å3
0 restraints Δρmin = −0.53 e Å3
0 constraints

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 −0.1973 (2) 0.79085 (19) 1.04506 (16) 0.0524 (4)
H1 −0.1413 0.8051 0.9723 0.063*
C2 −0.3565 (2) 0.8200 (2) 1.0527 (2) 0.0650 (5)
H2 −0.4054 0.8512 0.9852 0.078*
C3 −0.4417 (2) 0.8030 (2) 1.1589 (2) 0.0692 (6)
H3 −0.5494 0.8269 1.1637 0.083*
C4 −0.3681 (2) 0.7507 (2) 1.25786 (19) 0.0601 (5)
H4 −0.4258 0.7382 1.3301 0.072*
C5 −0.2083 (2) 0.71618 (19) 1.25148 (15) 0.0484 (4)
C6 −0.12093 (19) 0.74094 (18) 1.14417 (14) 0.0446 (4)
C7 −0.1307 (2) 0.6477 (3) 1.36242 (17) 0.0662 (5)
C8 0.0483 (2) 0.7240 (3) 1.13458 (15) 0.0570 (4)
H8A 0.0465 0.8048 1.1654 0.068*
H8B 0.1120 0.6221 1.1819 0.068*
C9 0.1988 (2) 0.5868 (2) 0.98362 (15) 0.0533 (4)
H9A 0.1208 0.5447 0.9957 0.064*
H9B 0.2835 0.5124 1.0328 0.064*
C10 0.2667 (2) 0.6058 (2) 0.85784 (15) 0.0512 (4)
H10A 0.3190 0.5041 0.8378 0.061*
H10B 0.1818 0.6756 0.8079 0.061*
C11 0.3078 (2) 0.8246 (2) 0.87272 (15) 0.0549 (4)
H11A 0.2231 0.8998 0.8237 0.066*
H11B 0.3862 0.8658 0.8617 0.066*
C12 0.2407 (2) 0.8003 (2) 0.99864 (16) 0.0572 (4)
H12A 0.3265 0.7275 1.0473 0.069*
H12B 0.1908 0.9000 1.0213 0.069*
C13 0.39911 (19) 0.7588 (2) 0.60451 (14) 0.0494 (4)
C14 0.3464 (2) 0.6848 (2) 0.55409 (16) 0.0586 (5)
H14 0.3724 0.5776 0.5826 0.070*
C15 0.2560 (2) 0.7693 (3) 0.46208 (17) 0.0650 (5)
H15 0.2211 0.7187 0.4284 0.078*
C16 0.2156 (2) 0.9293 (3) 0.41834 (15) 0.0607 (5)
C17 0.2694 (2) 1.0018 (2) 0.46948 (16) 0.0623 (5)
H17 0.2440 1.1088 0.4407 0.075*
C18 0.3601 (2) 0.9183 (2) 0.56233 (16) 0.0564 (4)
H18 0.3947 0.9687 0.5964 0.068*
C19 0.1146 (3) 1.0231 (4) 0.3176 (2) 0.0932 (8)
H19A 0.0038 1.0616 0.3464 0.140*
H19B 0.1364 0.9567 0.2665 0.140*
H19C 0.1394 1.1108 0.2758 0.140*
N1 0.12372 (17) 0.73734 (17) 1.01560 (12) 0.0492 (3)
N2 0.38211 (16) 0.67220 (16) 0.84130 (12) 0.0482 (3)
O1 0.58136 (16) 0.48817 (17) 0.72513 (13) 0.0758 (4)
O2 0.60748 (16) 0.7253 (2) 0.72858 (12) 0.0771 (4)
F1 −0.05597 (17) 0.7266 (2) 1.37482 (11) 0.0944 (5)
F2 −0.23300 (18) 0.6445 (2) 1.45635 (11) 0.1050 (5)
F3 −0.02138 (19) 0.49998 (18) 1.36833 (12) 0.1020 (5)
S1 0.51074 (5) 0.65163 (6) 0.72555 (4) 0.05661 (18)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0562 (10) 0.0455 (9) 0.0529 (10) −0.0191 (8) −0.0149 (8) −0.0053 (7)
C2 0.0602 (11) 0.0482 (10) 0.0846 (14) −0.0144 (9) −0.0344 (11) −0.0076 (9)
C3 0.0427 (10) 0.0585 (11) 0.1037 (17) −0.0164 (9) −0.0127 (11) −0.0198 (11)
C4 0.0473 (10) 0.0564 (10) 0.0756 (13) −0.0231 (8) 0.0041 (9) −0.0199 (9)
C5 0.0462 (9) 0.0456 (9) 0.0517 (9) −0.0183 (7) −0.0002 (7) −0.0144 (7)
C6 0.0433 (8) 0.0414 (8) 0.0475 (9) −0.0150 (7) −0.0060 (7) −0.0121 (7)
C7 0.0612 (12) 0.0861 (15) 0.0477 (10) −0.0313 (11) 0.0032 (9) −0.0172 (10)
C8 0.0502 (10) 0.0831 (13) 0.0427 (9) −0.0317 (9) −0.0003 (7) −0.0193 (9)
C9 0.0600 (10) 0.0541 (10) 0.0493 (9) −0.0324 (9) 0.0011 (8) −0.0084 (7)
C10 0.0595 (10) 0.0490 (9) 0.0479 (9) −0.0269 (8) 0.0021 (8) −0.0139 (7)
C11 0.0650 (11) 0.0588 (10) 0.0516 (10) −0.0377 (9) −0.0018 (8) −0.0115 (8)
C12 0.0670 (11) 0.0690 (11) 0.0508 (10) −0.0406 (10) 0.0005 (8) −0.0199 (8)
C13 0.0414 (8) 0.0590 (10) 0.0397 (8) −0.0213 (8) 0.0039 (7) −0.0068 (7)
C14 0.0609 (11) 0.0564 (10) 0.0553 (10) −0.0245 (9) 0.0012 (8) −0.0146 (8)
C15 0.0638 (12) 0.0822 (14) 0.0566 (11) −0.0333 (11) −0.0024 (9) −0.0254 (10)
C16 0.0500 (10) 0.0817 (14) 0.0409 (9) −0.0236 (9) −0.0002 (7) −0.0119 (9)
C17 0.0643 (12) 0.0602 (11) 0.0505 (10) −0.0255 (9) −0.0038 (9) −0.0002 (8)
C18 0.0604 (11) 0.0619 (11) 0.0494 (10) −0.0326 (9) −0.0038 (8) −0.0068 (8)
C19 0.0775 (15) 0.124 (2) 0.0571 (13) −0.0275 (15) −0.0203 (11) −0.0076 (13)
N1 0.0514 (8) 0.0605 (8) 0.0421 (7) −0.0291 (7) 0.0010 (6) −0.0160 (6)
N2 0.0475 (8) 0.0526 (8) 0.0414 (7) −0.0232 (6) −0.0020 (6) −0.0054 (6)
O1 0.0583 (8) 0.0634 (8) 0.0647 (9) −0.0005 (7) 0.0021 (6) −0.0076 (6)
O2 0.0539 (8) 0.1138 (12) 0.0621 (8) −0.0461 (8) −0.0073 (6) −0.0008 (8)
F1 0.0980 (10) 0.1560 (14) 0.0594 (8) −0.0745 (10) −0.0026 (7) −0.0361 (8)
F2 0.0923 (10) 0.1675 (15) 0.0502 (7) −0.0651 (10) 0.0168 (7) −0.0202 (8)
F3 0.1030 (11) 0.0919 (10) 0.0645 (8) −0.0078 (8) −0.0260 (7) 0.0014 (7)
S1 0.0409 (3) 0.0670 (3) 0.0460 (3) −0.0177 (2) −0.00155 (18) −0.0027 (2)

Geometric parameters (Å, º)

C1—C6 1.384 (2) C11—N2 1.464 (2)
C1—C2 1.390 (3) C11—C12 1.510 (2)
C1—H1 0.9300 C11—H11A 0.9700
C2—C3 1.368 (3) C11—H11B 0.9700
C2—H2 0.9300 C12—N1 1.456 (2)
C3—C4 1.364 (3) C12—H12A 0.9700
C3—H3 0.9300 C12—H12B 0.9700
C4—C5 1.384 (2) C13—C14 1.381 (3)
C4—H4 0.9300 C13—C18 1.382 (3)
C5—C6 1.398 (2) C13—S1 1.7625 (17)
C5—C7 1.496 (3) C14—C15 1.369 (3)
C6—C8 1.519 (2) C14—H14 0.9300
C7—F2 1.325 (2) C15—C16 1.386 (3)
C7—F1 1.328 (3) C15—H15 0.9300
C7—F3 1.329 (3) C16—C17 1.383 (3)
C8—N1 1.458 (2) C16—C19 1.510 (3)
C8—H8A 0.9700 C17—C18 1.378 (3)
C8—H8B 0.9700 C17—H17 0.9300
C9—N1 1.451 (2) C18—H18 0.9300
C9—C10 1.510 (2) C19—H19A 0.9600
C9—H9A 0.9700 C19—H19B 0.9600
C9—H9B 0.9700 C19—H19C 0.9600
C10—N2 1.468 (2) N2—S1 1.6391 (14)
C10—H10A 0.9700 O2—S1 1.4223 (15)
C10—H10B 0.9700 S1—O1 1.4282 (15)
C6—C1—C2 120.91 (18) N2—C11—H11B 110.0
C6—C1—H1 119.5 C12—C11—H11B 110.0
C2—C1—H1 119.5 H11A—C11—H11B 108.4
C3—C2—C1 120.35 (18) N1—C12—C11 110.19 (14)
C3—C2—H2 119.8 N1—C12—H12A 109.6
C1—C2—H2 119.8 C11—C12—H12A 109.6
C4—C3—C2 119.77 (18) N1—C12—H12B 109.6
C4—C3—H3 120.1 C11—C12—H12B 109.6
C2—C3—H3 120.1 H12A—C12—H12B 108.1
C3—C4—C5 120.43 (18) C14—C13—C18 120.00 (17)
C3—C4—H4 119.8 C14—C13—S1 120.06 (14)
C5—C4—H4 119.8 C18—C13—S1 119.91 (14)
C4—C5—C6 120.86 (17) C15—C14—C13 119.93 (18)
C4—C5—C7 118.11 (16) C15—C14—H14 120.0
C6—C5—C7 121.01 (15) C13—C14—H14 120.0
C1—C6—C5 117.53 (15) C14—C15—C16 121.02 (18)
C1—C6—C8 120.23 (15) C14—C15—H15 119.5
C5—C6—C8 122.15 (15) C16—C15—H15 119.5
F2—C7—F1 105.93 (17) C17—C16—C15 118.43 (18)
F2—C7—F3 106.64 (18) C17—C16—C19 120.4 (2)
F1—C7—F3 106.07 (18) C15—C16—C19 121.1 (2)
F2—C7—C5 113.14 (17) C18—C17—C16 121.17 (18)
F1—C7—C5 113.06 (17) C18—C17—H17 119.4
F3—C7—C5 111.48 (16) C16—C17—H17 119.4
N1—C8—C6 113.17 (14) C17—C18—C13 119.45 (17)
N1—C8—H8A 108.9 C17—C18—H18 120.3
C6—C8—H8A 108.9 C13—C18—H18 120.3
N1—C8—H8B 108.9 C16—C19—H19A 109.5
C6—C8—H8B 108.9 C16—C19—H19B 109.5
H8A—C8—H8B 107.8 H19A—C19—H19B 109.5
N1—C9—C10 110.58 (13) C16—C19—H19C 109.5
N1—C9—H9A 109.5 H19A—C19—H19C 109.5
C10—C9—H9A 109.5 H19B—C19—H19C 109.5
N1—C9—H9B 109.5 C9—N1—C12 109.73 (14)
C10—C9—H9B 109.5 C9—N1—C8 111.63 (14)
H9A—C9—H9B 108.1 C12—N1—C8 111.32 (13)
N2—C10—C9 108.49 (13) C11—N2—C10 111.46 (13)
N2—C10—H10A 110.0 C11—N2—S1 118.22 (11)
C9—C10—H10A 110.0 C10—N2—S1 116.83 (11)
N2—C10—H10B 110.0 O2—S1—O1 120.28 (9)
C9—C10—H10B 110.0 O2—S1—N2 106.27 (8)
H10A—C10—H10B 108.4 O1—S1—N2 106.46 (8)
N2—C11—C12 108.27 (14) O2—S1—C13 108.64 (8)
N2—C11—H11A 110.0 O1—S1—C13 107.92 (9)
C12—C11—H11A 110.0 N2—S1—C13 106.48 (7)

Hydrogen-bond geometry (Å, º)

Cg is the centroid of the benzene ring of the trifluoromethylphenyl group (C1–C6).

D—H···A D—H H···A D···A D—H···A
C11—H11A···Cgi 0.97 2.84 (1) 3.670 (2) 144

Symmetry code: (i) −x, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: GK2548).

References

  1. Bruker (2009). APEX2, SADABS, SAINT-Plus and XPREP Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
  3. Gan, L.-L., Cai, J.-L. & Zhou, C.-H. (2009a). Chin. Pharm. J. 44, 1361–1368.
  4. Gan, L.-L., Lu, Y.-H. & Zhou, C.-H. (2009b). Chin. J. Biochem. Pharm. 30, 127–131.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813000317/gk2548sup1.cif

e-69-0o239-sup1.cif (25KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813000317/gk2548Isup2.hkl

e-69-0o239-Isup2.hkl (164.7KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813000317/gk2548Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES