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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Jan 19;69(Pt 2):o263. doi: 10.1107/S1600536813001426

(2S,4R)-2-[(1R)-1-(4-Bromo­phen­yl)-2-nitro­eth­yl]-4-ethyl­cyclo­hexa­none

Chi-Xiao Zhang a, Yan-Peng Zhang a, Ai-Bao Xia a,*
PMCID: PMC3569793  PMID: 23424539

Abstract

The crystal structure of the title compound, C16H20BrNO3, contains three chiral centers in the configuration 1R,2S,6R. The cyclo­hexane ring is in a chair conformation. In the crystal, mol­ecules are linked by weak C—H⋯O inter­actions, forming chains along the a-axis direction.

Related literature  

For related compounds, see: Hayashi et al. (2005); Li et al. (2009); Xia et al. (2009); Wu et al. (2011). For asymmetric Michael addition reactions, see: Luo et al. (2007). For enanti­oselective organocatalytic Michael additions, see: Peelen et al. (2005); Ma et al. (2008).graphic file with name e-69-0o263-scheme1.jpg

Experimental  

Crystal data  

  • C16H20BrNO3

  • M r = 354.24

  • Monoclinic, Inline graphic

  • a = 5.6434 (4) Å

  • b = 9.2179 (6) Å

  • c = 16.5472 (9) Å

  • β = 101.782 (3)°

  • V = 842.65 (9) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 2.45 mm−1

  • T = 296 K

  • 0.52 × 0.31 × 0.18 mm

Data collection  

  • Rigaku R-AXIS RAPID/ZJUG diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.279, T max = 0.644

  • 7234 measured reflections

  • 3277 independent reflections

  • 1619 reflections with I > 2σ(I)

  • R int = 0.071

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.056

  • wR(F 2) = 0.175

  • S = 1.00

  • 3277 reflections

  • 191 parameters

  • 1 restraint

  • H-atom parameters constrained

  • Δρmax = 0.35 e Å−3

  • Δρmin = −0.29 e Å−3

  • Absolute structure: Flack (1983), 1259 Friedel pairs

  • Flack parameter: 0.03 (2)

Data collection: PROCESS-AUTO (Rigaku, 2006); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: WinGX (Farrugia, 2012).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813001426/zq2194sup1.cif

e-69-0o263-sup1.cif (24.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813001426/zq2194Isup2.hkl

e-69-0o263-Isup2.hkl (157.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813001426/zq2194Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C11—H11⋯O3i 0.93 2.56 3.478 (9) 169
C16—H16B⋯O3i 0.97 2.58 3.500 (8) 158

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank Professor Jian-Ming Gu of Zhejiang University for his help.

supplementary crystallographic information

Comment

The Michael reaction (e.g. Luo et al., 2007; Ma et al., 2008; Peelen et al., 2005) of a carbon nucleophile with a nitroalkene is one useful synthetic method for the preparation of nitroalkanes, which are versatile synthetic intermediates owing to the various possible transformations of the nitro group into other useful functional groups (Hayashi et al., 2005). The title compound was obtained from the Michael addition of 4-ethylcyclohexanone to 1-(4-bromophenyl)-2-nitroethene in our laboratory. For related structures, see: Li et al. (2009); Xia et al. (2009); Wu et al. (2011).

The title compound is shown in Fig. 1.The cyclohexyl ring adopts a chair conformation. The plane of the phenyl ring and the least-square plane of the cyclohexyl moiety enclose an angle of 70.00 (3)° while the plane through the nitro group and the adjacent C16 atom encloses an angle of 63.26 (3)° with the phenyl ring. In the crystal, molecules are linked by weak C—H···O interactions forming chains along the a axis (Table 1).

Experimental

An isopropyl ether (0.5 mL) solution of 1-(4-bromophenyl)-2-nitroethene (0.6 mmol) and 4-ethylcyclohexanone (1.2 mmol) was stirred with the (S)-2-(pyrrolidin-2-ylmethylthio)pyridine (0.12 mmol) as catalyst and benzoic acid (0.12 mmol) as cocatalyst at room temperature. After completion of the reaction, the mixture was extracted with ethyl acetate. Solvents were removed under vacuum and the residue was purified by column chromatography on silica gel (eluent: petroleum ether-ether). Suitable crystals were obtained by slow evaporation of an ether solution.

Refinement

H atoms were placed in calculated position with C—H ranging from 0.93 Å to 0.98 Å. All H atoms were included in the final cycles of refinement as riding mode, with Uiso(H) = 1.2Ueq(C) for aromatic, methylene and methine H atoms, and with Uiso(H) = 1.5Ueq(C) for methyl H atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with the atomic labeling scheme. Displacement ellipsoids are drawn at the 50% probability level.

Crystal data

C16H20BrNO3 F(000) = 364
Mr = 354.24 Dx = 1.396 Mg m3
Monoclinic, P21 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2yb Cell parameters from 4682 reflections
a = 5.6434 (4) Å θ = 3.4–27.4°
b = 9.2179 (6) Å µ = 2.45 mm1
c = 16.5472 (9) Å T = 296 K
β = 101.782 (3)° Platelet, colourless
V = 842.65 (9) Å3 0.52 × 0.31 × 0.18 mm
Z = 2

Data collection

Rigaku R-AXIS RAPID/ZJUG diffractometer 3277 independent reflections
Radiation source: rotating anode 1619 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.071
Detector resolution: 10.00 pixels mm-1 θmax = 26.0°, θmin = 3.4°
ω scans h = −6→6
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) k = −11→11
Tmin = 0.279, Tmax = 0.644 l = −20→20
7234 measured reflections

Refinement

Refinement on F2 Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: full H-atom parameters constrained
R[F2 > 2σ(F2)] = 0.056 w = 1/[σ2(Fo2) + (0.0605P)2 + 0.3P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.175 (Δ/σ)max < 0.001
S = 1.00 Δρmax = 0.35 e Å3
3277 reflections Δρmin = −0.29 e Å3
191 parameters Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraint Extinction coefficient: 0.072 (8)
Primary atom site location: structure-invariant direct methods Absolute structure: Flack (1983), 1259 Friedel pairs
Secondary atom site location: difference Fourier map Flack parameter: 0.03 (2)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.2312 (11) 0.2884 (7) 0.1770 (4) 0.0563 (15)
H1 0.0766 0.3379 0.1754 0.068*
C2 0.4174 (11) 0.4066 (6) 0.1660 (4) 0.0541 (15)
H2 0.5499 0.3592 0.1461 0.065*
C3 0.3093 (14) 0.5225 (7) 0.1030 (4) 0.0712 (19)
C4 0.4813 (15) 0.6373 (10) 0.0880 (5) 0.091 (3)
H4A 0.3957 0.7096 0.0504 0.109*
H4B 0.6060 0.5948 0.0629 0.109*
C5 0.5974 (14) 0.7093 (9) 0.1702 (5) 0.090 (2)
H5A 0.7190 0.7778 0.1605 0.108*
H5B 0.4742 0.7634 0.1905 0.108*
C6 0.7146 (11) 0.6025 (7) 0.2361 (5) 0.0672 (18)
H6 0.8446 0.5533 0.2156 0.081*
C7 0.5264 (10) 0.4859 (8) 0.2467 (3) 0.0582 (14)
H7A 0.6031 0.4153 0.2872 0.070*
H7B 0.3969 0.5317 0.2679 0.070*
C8 0.8263 (14) 0.6704 (9) 0.3179 (5) 0.089 (2)
H8A 0.8867 0.5934 0.3565 0.107*
H8B 0.6999 0.7206 0.3387 0.107*
C9 1.0317 (16) 0.7769 (10) 0.3167 (7) 0.110 (3)
H9A 1.0904 0.8137 0.3714 0.165*
H9B 0.9736 0.8558 0.2802 0.165*
H9C 1.1607 0.7282 0.2978 0.165*
C10 0.2948 (10) 0.2114 (7) 0.2592 (4) 0.0522 (14)
C11 0.4955 (12) 0.1193 (7) 0.2768 (4) 0.0646 (17)
H11 0.5875 0.1042 0.2369 0.078*
C12 0.5606 (13) 0.0500 (7) 0.3524 (5) 0.075 (2)
H12 0.6965 −0.0094 0.3637 0.090*
C13 0.4189 (15) 0.0708 (8) 0.4112 (5) 0.076 (2)
C14 0.2187 (14) 0.1583 (8) 0.3947 (4) 0.0708 (19)
H14 0.1244 0.1714 0.4341 0.085*
C15 0.1579 (11) 0.2267 (8) 0.3194 (4) 0.0622 (17)
H15 0.0206 0.2851 0.3085 0.075*
C16 0.1937 (11) 0.1852 (7) 0.1032 (4) 0.0616 (17)
H16A 0.1394 0.2399 0.0527 0.074*
H16B 0.3464 0.1395 0.1001 0.074*
N1 0.0135 (12) 0.0724 (7) 0.1101 (4) 0.0700 (16)
O1 0.0953 (10) 0.5240 (6) 0.0704 (3) 0.0925 (19)
O2 0.0723 (11) −0.0541 (7) 0.1111 (4) 0.1028 (18)
O3 −0.1912 (9) 0.1117 (7) 0.1163 (3) 0.0939 (17)
Br1 0.5073 (2) −0.02467 (17) 0.51442 (5) 0.1269 (6)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.058 (3) 0.059 (3) 0.054 (4) −0.002 (3) 0.015 (3) −0.004 (3)
C2 0.053 (3) 0.055 (3) 0.056 (3) −0.005 (3) 0.015 (3) 0.006 (3)
C3 0.089 (5) 0.074 (5) 0.053 (4) −0.003 (4) 0.019 (3) 0.010 (3)
C4 0.096 (5) 0.099 (6) 0.074 (5) −0.021 (5) 0.007 (4) 0.028 (4)
C5 0.084 (5) 0.071 (5) 0.120 (7) −0.004 (4) 0.028 (5) 0.035 (5)
C6 0.058 (4) 0.052 (4) 0.091 (5) −0.004 (3) 0.012 (4) −0.001 (4)
C7 0.063 (3) 0.050 (3) 0.059 (3) 0.002 (3) 0.008 (3) −0.005 (4)
C8 0.084 (5) 0.076 (5) 0.105 (6) −0.013 (4) 0.013 (4) −0.015 (4)
C9 0.087 (5) 0.092 (6) 0.153 (10) −0.022 (5) 0.030 (6) −0.035 (6)
C10 0.050 (3) 0.050 (3) 0.056 (4) 0.002 (3) 0.009 (3) 0.005 (3)
C11 0.072 (4) 0.067 (4) 0.059 (4) 0.004 (4) 0.023 (3) 0.010 (3)
C12 0.069 (4) 0.061 (4) 0.089 (5) 0.005 (3) 0.000 (4) −0.002 (4)
C13 0.094 (5) 0.069 (4) 0.063 (4) −0.006 (4) 0.011 (4) −0.015 (4)
C14 0.085 (5) 0.083 (5) 0.047 (4) 0.001 (4) 0.020 (3) −0.003 (3)
C15 0.062 (4) 0.066 (4) 0.062 (4) 0.001 (4) 0.019 (3) 0.002 (3)
C16 0.060 (3) 0.074 (5) 0.051 (3) −0.011 (3) 0.012 (3) −0.008 (4)
N1 0.077 (4) 0.078 (5) 0.053 (3) −0.015 (4) 0.009 (3) −0.001 (3)
O1 0.081 (3) 0.111 (5) 0.077 (3) 0.000 (3) −0.003 (3) 0.031 (3)
O2 0.107 (4) 0.067 (4) 0.128 (5) −0.012 (3) 0.007 (3) 0.016 (3)
O3 0.063 (3) 0.127 (5) 0.097 (4) −0.028 (3) 0.030 (3) −0.031 (3)
Br1 0.1788 (11) 0.1258 (9) 0.0677 (6) 0.0169 (8) 0.0050 (5) 0.0258 (7)

Geometric parameters (Å, º)

C1—C10 1.511 (8) C8—H8A 0.9700
C1—C16 1.528 (8) C8—H8B 0.9700
C1—C2 1.550 (8) C9—H9A 0.9600
C1—H1 0.9800 C9—H9B 0.9600
C2—C3 1.530 (8) C9—H9C 0.9600
C2—C7 1.535 (8) C10—C15 1.387 (8)
C2—H2 0.9800 C10—C11 1.398 (8)
C3—O1 1.218 (8) C11—C12 1.386 (9)
C3—C4 1.490 (10) C11—H11 0.9300
C4—C5 1.536 (12) C12—C13 1.392 (11)
C4—H4A 0.9700 C12—H12 0.9300
C4—H4B 0.9700 C13—C14 1.370 (10)
C5—C6 1.517 (10) C13—Br1 1.896 (8)
C5—H5A 0.9700 C14—C15 1.376 (9)
C5—H5B 0.9700 C14—H14 0.9300
C6—C8 1.506 (10) C15—H15 0.9300
C6—C7 1.546 (9) C16—N1 1.475 (9)
C6—H6 0.9800 C16—H16A 0.9700
C7—H7A 0.9700 C16—H16B 0.9700
C7—H7B 0.9700 N1—O2 1.212 (9)
C8—C9 1.522 (11) N1—O3 1.235 (7)
C10—C1—C16 113.3 (5) C6—C8—C9 115.9 (8)
C10—C1—C2 113.2 (5) C6—C8—H8A 108.3
C16—C1—C2 109.3 (5) C9—C8—H8A 108.3
C10—C1—H1 106.9 C6—C8—H8B 108.3
C16—C1—H1 106.9 C9—C8—H8B 108.3
C2—C1—H1 106.9 H8A—C8—H8B 107.4
C3—C2—C7 107.1 (5) C8—C9—H9A 109.5
C3—C2—C1 112.7 (5) C8—C9—H9B 109.5
C7—C2—C1 113.2 (5) H9A—C9—H9B 109.5
C3—C2—H2 107.9 C8—C9—H9C 109.5
C7—C2—H2 107.9 H9A—C9—H9C 109.5
C1—C2—H2 107.9 H9B—C9—H9C 109.5
O1—C3—C4 122.6 (6) C15—C10—C11 117.3 (6)
O1—C3—C2 122.0 (6) C15—C10—C1 122.3 (5)
C4—C3—C2 115.3 (6) C11—C10—C1 120.4 (5)
C3—C4—C5 109.5 (6) C12—C11—C10 121.5 (6)
C3—C4—H4A 109.8 C12—C11—H11 119.2
C5—C4—H4A 109.8 C10—C11—H11 119.2
C3—C4—H4B 109.8 C11—C12—C13 118.9 (7)
C5—C4—H4B 109.8 C11—C12—H12 120.6
H4A—C4—H4B 108.2 C13—C12—H12 120.6
C6—C5—C4 113.7 (7) C14—C13—C12 120.7 (7)
C6—C5—H5A 108.8 C14—C13—Br1 120.5 (6)
C4—C5—H5A 108.8 C12—C13—Br1 118.8 (6)
C6—C5—H5B 108.8 C15—C14—C13 119.6 (7)
C4—C5—H5B 108.8 C15—C14—H14 120.2
H5A—C5—H5B 107.7 C13—C14—H14 120.2
C8—C6—C5 114.6 (6) C14—C15—C10 122.1 (6)
C8—C6—C7 111.0 (6) C14—C15—H15 119.0
C5—C6—C7 108.9 (5) C10—C15—H15 119.0
C8—C6—H6 107.3 N1—C16—C1 111.2 (5)
C5—C6—H6 107.3 N1—C16—H16A 109.4
C7—C6—H6 107.3 C1—C16—H16A 109.4
C2—C7—C6 113.3 (5) N1—C16—H16B 109.4
C2—C7—H7A 108.9 C1—C16—H16B 109.4
C6—C7—H7A 108.9 H16A—C16—H16B 108.0
C2—C7—H7B 108.9 O2—N1—O3 122.6 (7)
C6—C7—H7B 108.9 O2—N1—C16 119.2 (7)
H7A—C7—H7B 107.7 O3—N1—C16 118.1 (6)
C10—C1—C2—C3 −156.6 (5) C16—C1—C10—C15 −122.7 (7)
C16—C1—C2—C3 76.1 (6) C2—C1—C10—C15 112.1 (7)
C10—C1—C2—C7 −34.9 (7) C16—C1—C10—C11 56.5 (8)
C16—C1—C2—C7 −162.2 (5) C2—C1—C10—C11 −68.7 (8)
C7—C2—C3—O1 −120.3 (7) C15—C10—C11—C12 −2.2 (9)
C1—C2—C3—O1 4.8 (9) C1—C10—C11—C12 178.6 (6)
C7—C2—C3—C4 56.5 (8) C10—C11—C12—C13 1.3 (10)
C1—C2—C3—C4 −178.4 (6) C11—C12—C13—C14 0.0 (11)
O1—C3—C4—C5 121.3 (8) C11—C12—C13—Br1 179.8 (5)
C2—C3—C4—C5 −55.4 (9) C12—C13—C14—C15 −0.3 (11)
C3—C4—C5—C6 53.7 (9) Br1—C13—C14—C15 179.9 (6)
C4—C5—C6—C8 −179.0 (6) C13—C14—C15—C10 −0.7 (11)
C4—C5—C6—C7 −54.0 (8) C11—C10—C15—C14 1.9 (10)
C3—C2—C7—C6 −56.0 (7) C1—C10—C15—C14 −178.9 (6)
C1—C2—C7—C6 179.2 (5) C10—C1—C16—N1 54.0 (7)
C8—C6—C7—C2 −176.6 (5) C2—C1—C16—N1 −178.8 (5)
C5—C6—C7—C2 56.3 (8) C1—C16—N1—O2 −120.9 (8)
C5—C6—C8—C9 −61.7 (9) C1—C16—N1—O3 57.6 (7)
C7—C6—C8—C9 174.4 (7)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C11—H11···O3i 0.93 2.56 3.478 (9) 169
C16—H16B···O3i 0.97 2.58 3.500 (8) 158

Symmetry code: (i) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZQ2194).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813001426/zq2194sup1.cif

e-69-0o263-sup1.cif (24.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813001426/zq2194Isup2.hkl

e-69-0o263-Isup2.hkl (157.5KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813001426/zq2194Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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