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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Jan 23;69(Pt 2):o277. doi: 10.1107/S1600536813001748

(E)-2-Meth­oxy-N′-(2,4,6-trihy­droxy­benzyl­idene)benzohydrazide

Muhammad Taha a, M Syukri Baharudin a, Nor Hadiani Ismail b, Syed Adnan Ali Shah a,c, Sammer Yousuf d,*
PMCID: PMC3569804  PMID: 23424550

Abstract

In the title hydrazone derivative, C15H14N2O5, the benzene rings are twisted by 7.55 (8)° with respect to each other. The azomethine double bond adopts an E conformation. The mol­ecular structure is stabilized by intra­molecular O—H⋯N and N—H⋯O hydrogen bonds, generating S6 ring motifs. In the crystal, mol­ecules are linked into a three-dimensional network by O—H⋯O hydrogen bonds.

Related literature  

For applications and biological activity of Schiff bases, see: Khan et al. (2011, 2012); Rada & Leto (2008); Almasirad et al. (2006). For related structures, see: Taha et al. (2012); Shen et al. (2012).graphic file with name e-69-0o277-scheme1.jpg

Experimental  

Crystal data  

  • C15H14N2O5

  • M r = 302.28

  • Orthorhombic, Inline graphic

  • a = 6.4580 (4) Å

  • b = 13.4772 (8) Å

  • c = 16.3169 (9) Å

  • V = 1420.15 (14) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.11 mm−1

  • T = 273 K

  • 0.34 × 0.23 × 0.21 mm

Data collection  

  • Bruker SMART APEX CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2000) T min = 0.964, T max = 0.978

  • 8414 measured reflections

  • 2643 independent reflections

  • 2481 reflections with I > 2σ(I)

  • R int = 0.019

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.030

  • wR(F 2) = 0.080

  • S = 1.07

  • 2643 reflections

  • 216 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.13 e Å−3

  • Δρmin = −0.13 e Å−3

Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995) and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813001748/rz5037sup1.cif

e-69-0o277-sup1.cif (19.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813001748/rz5037Isup2.hkl

e-69-0o277-Isup2.hkl (129.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813001748/rz5037Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1A⋯N1 0.84 (3) 1.88 (2) 2.6243 (18) 147 (2)
N2—H2A⋯O5 0.851 (19) 1.923 (19) 2.5981 (18) 135.4 (17)
O3—H2B⋯O4i 0.86 (2) 1.79 (2) 2.6452 (17) 175 (2)
O2—H3A⋯O1ii 0.93 (3) 1.92 (3) 2.8513 (18) 172 (3)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

supplementary crystallographic information

Comment

Hydrazone derivatives represent an important class of organic compounds. Due to their biological activities (Khan et al., 2011, 2012; Rada & Leto, 2008; Almasirad et al., 2006) the research for this class of compounds is an area of great interest. The title compound is a hydrazone derivatives synthesized as a part of our ongoing research to establish a library of bioactive hydrazone derivatives.

The structure of the title compound (Fig. 1) is similar to that of the previously published compound N'-(3,4-dihydroxybenzylidene)-2- methoxybenzohydrazide (Shen et al., 2012) with the difference that the 3,4-dihydroxy benzene ring is replaced by a 2,4,6-trihydroxy benzene ring (C1–C6). The dihedral angle between the two benzene rings is 7.55 (8)°. The bond lengths and angles were found to be similar to those observed in structurally related benzohydrazide derivatives (Taha et al., 2012; Shen et al., 2012). Intramolecular O1—H1A···N1 and N2—H2A···O5 hydrogen bonds play an important role to stabilize the E configuration of the azomethine olefinic bond (Table 1). The crystal structure (Fig. 2) is stabilized by intermolecular O3—H2B···O4 and O2—H3A···O1 interactions to form a three-dimensional network.

Experimental

The title compound was synthesized by refluxing a mixture of 2-methoxybenzohydrazide (0.332 g, 2 mmol) and 2,4,6-trihydroxy-5-methoxybenzaldehyde (0.304 g, 2 mmol) in methanol along with a catalytical amount of acetic acid for 3 h. The progress of reaction was monitored by TLC. After completion of the reaction, the solvent was evaporated by vacuum to afford the crude product which was recrystallized by dissolving in methanol at room temperature. Needle-shaped crystals were obtained on slow evaporation of the solvent (0.496 g, 82% yield). All chemicals were purchased by Sigma Aldrich, Germany.

Refinement

H atoms on methyl, phenyl and methine carbon atoms were positioned geometrically with C—H = 0.96 Å (CH3) and 0.93 Å (CH) and constrained to ride on their parent atoms with Uiso(H)= 1.5Ueq(CH3) or 1.2Ueq(CH). The H atoms on the nitrogen (N–H= 0.835 (17) Å) and oxygen (O–H= 0.84 (2)–0.93(2 Å) atoms were located in a difference Fourier map and refined isotropically. A rotating group model was applied to the methyl group.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with displacement ellipsoids drawn at 30% probability level. Intramolecular hydrogen bonds are shown as dashed lines.

Fig. 2.

Fig. 2.

Crystal packing of the title compound viewed down the a axis. Only hydrogen atoms involved in hydrogen bonding are shown.

Crystal data

C15H14N2O5 F(000) = 632
Mr = 302.28 Dx = 1.414 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 3988 reflections
a = 6.4580 (4) Å θ = 2.5–27.8°
b = 13.4772 (8) Å µ = 0.11 mm1
c = 16.3169 (9) Å T = 273 K
V = 1420.15 (14) Å3 Block, colourless
Z = 4 0.34 × 0.23 × 0.21 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 2643 independent reflections
Radiation source: fine-focus sealed tube 2481 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.019
ω scan θmax = 25.5°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2000) h = −6→7
Tmin = 0.964, Tmax = 0.978 k = −16→16
8414 measured reflections l = −19→19

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080 H atoms treated by a mixture of independent and constrained refinement
S = 1.07 w = 1/[σ2(Fo2) + (0.0444P)2 + 0.1141P] where P = (Fo2 + 2Fc2)/3
2643 reflections (Δ/σ)max < 0.001
216 parameters Δρmax = 0.13 e Å3
0 restraints Δρmin = −0.13 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.5330 (2) 0.22125 (9) 0.11606 (8) 0.0543 (3)
O2 1.1070 (2) 0.40655 (9) 0.02009 (8) 0.0578 (3)
H3A 1.091 (5) 0.3604 (19) −0.0222 (16) 0.100 (8)*
O3 0.6905 (2) 0.53380 (9) 0.23545 (7) 0.0511 (3)
H2B 0.785 (3) 0.5781 (16) 0.2396 (12) 0.065 (7)*
O4 0.0021 (2) 0.16307 (8) 0.25569 (7) 0.0518 (3)
O5 −0.0653 (2) 0.42748 (8) 0.38286 (8) 0.0578 (3)
N1 0.2953 (2) 0.30535 (10) 0.22647 (8) 0.0421 (3)
N2 0.1262 (2) 0.31688 (11) 0.27673 (8) 0.0436 (3)
H2A 0.111 (3) 0.3735 (14) 0.2990 (11) 0.054 (5)*
C1 0.6522 (2) 0.30443 (11) 0.12072 (9) 0.0403 (3)
C2 0.8209 (3) 0.31059 (12) 0.06945 (10) 0.0447 (4)
H2C 0.8508 0.2594 0.0331 0.054*
C3 0.9454 (3) 0.39399 (11) 0.07272 (9) 0.0419 (4)
C4 0.9087 (2) 0.46946 (11) 0.12866 (9) 0.0410 (3)
H4A 0.9973 0.5238 0.1318 0.049*
C5 0.7383 (2) 0.46267 (10) 0.17972 (9) 0.0382 (3)
C6 0.6031 (2) 0.38110 (11) 0.17590 (9) 0.0377 (3)
C7 0.4203 (3) 0.37914 (12) 0.22646 (9) 0.0411 (3)
H7A 0.3922 0.4331 0.2602 0.049*
C8 −0.0127 (2) 0.24489 (11) 0.28886 (9) 0.0385 (3)
C9 −0.1900 (2) 0.26844 (11) 0.34441 (9) 0.0376 (3)
C10 −0.3409 (3) 0.19578 (12) 0.35197 (10) 0.0448 (4)
H10A −0.3256 0.1368 0.3231 0.054*
C11 −0.5130 (3) 0.20830 (14) 0.40098 (10) 0.0521 (4)
H11A −0.6111 0.1581 0.4055 0.063*
C12 −0.5376 (3) 0.29535 (14) 0.44283 (10) 0.0550 (5)
H12A −0.6537 0.3043 0.4758 0.066*
C13 −0.3922 (3) 0.37023 (14) 0.43680 (10) 0.0512 (4)
H13A −0.4119 0.4295 0.4650 0.061*
C14 −0.2165 (3) 0.35718 (12) 0.38868 (9) 0.0431 (4)
C15 −0.0887 (4) 0.52036 (14) 0.42409 (13) 0.0725 (6)
H15A 0.0214 0.5642 0.4082 0.109*
H15B −0.0837 0.5099 0.4823 0.109*
H15C −0.2194 0.5494 0.4096 0.109*
H1A 0.432 (4) 0.2267 (18) 0.1484 (15) 0.094 (9)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0576 (8) 0.0517 (7) 0.0535 (7) −0.0166 (6) 0.0105 (6) −0.0109 (5)
O2 0.0546 (8) 0.0572 (7) 0.0615 (7) −0.0047 (6) 0.0220 (7) −0.0072 (6)
O3 0.0522 (8) 0.0449 (7) 0.0562 (7) −0.0059 (6) 0.0124 (6) −0.0104 (5)
O4 0.0498 (7) 0.0414 (6) 0.0640 (7) 0.0035 (5) 0.0084 (6) −0.0035 (5)
O5 0.0560 (8) 0.0481 (6) 0.0692 (8) −0.0065 (6) 0.0153 (7) −0.0140 (6)
N1 0.0348 (7) 0.0485 (7) 0.0429 (7) 0.0014 (6) 0.0043 (6) 0.0031 (6)
N2 0.0360 (7) 0.0438 (7) 0.0509 (8) 0.0004 (6) 0.0083 (6) −0.0015 (6)
C1 0.0416 (9) 0.0404 (7) 0.0388 (7) −0.0034 (7) −0.0035 (7) 0.0019 (6)
C2 0.0500 (10) 0.0429 (8) 0.0411 (8) 0.0020 (8) 0.0065 (7) −0.0041 (6)
C3 0.0387 (9) 0.0456 (8) 0.0416 (8) 0.0031 (7) 0.0052 (7) 0.0058 (6)
C4 0.0411 (9) 0.0375 (7) 0.0444 (8) −0.0031 (7) 0.0017 (7) 0.0022 (6)
C5 0.0405 (8) 0.0375 (7) 0.0365 (7) 0.0049 (7) −0.0005 (7) 0.0021 (6)
C6 0.0362 (8) 0.0416 (8) 0.0354 (7) 0.0020 (7) −0.0004 (7) 0.0043 (6)
C7 0.0388 (9) 0.0448 (8) 0.0396 (8) 0.0021 (7) 0.0009 (7) 0.0021 (6)
C8 0.0355 (8) 0.0398 (8) 0.0401 (7) 0.0060 (7) −0.0030 (7) 0.0061 (6)
C9 0.0341 (8) 0.0421 (8) 0.0366 (7) 0.0034 (6) −0.0015 (6) 0.0057 (6)
C10 0.0418 (9) 0.0471 (8) 0.0453 (8) −0.0014 (7) −0.0017 (7) 0.0050 (7)
C11 0.0427 (10) 0.0657 (11) 0.0480 (9) −0.0100 (9) 0.0030 (8) 0.0080 (8)
C12 0.0410 (10) 0.0777 (12) 0.0462 (9) 0.0026 (9) 0.0109 (8) 0.0080 (8)
C13 0.0520 (11) 0.0583 (10) 0.0433 (8) 0.0049 (9) 0.0070 (8) −0.0027 (7)
C14 0.0408 (9) 0.0484 (8) 0.0403 (8) 0.0006 (7) 0.0002 (7) 0.0037 (7)
C15 0.0877 (16) 0.0541 (11) 0.0757 (12) −0.0109 (11) 0.0154 (12) −0.0200 (9)

Geometric parameters (Å, º)

O1—C1 1.3622 (18) C4—H4A 0.9300
O1—H1A 0.84 (3) C5—C6 1.405 (2)
O2—C3 1.362 (2) C6—C7 1.440 (2)
O2—H3A 0.93 (3) C7—H7A 0.9300
O3—C5 1.3569 (18) C8—C9 1.494 (2)
O3—H2B 0.86 (2) C9—C10 1.387 (2)
O4—C8 1.2321 (19) C9—C14 1.408 (2)
O5—C14 1.364 (2) C10—C11 1.379 (2)
O5—C15 1.429 (2) C10—H10A 0.9300
N1—C7 1.281 (2) C11—C12 1.367 (3)
N1—N2 1.3742 (18) C11—H11A 0.9300
N2—C8 1.336 (2) C12—C13 1.382 (3)
N2—H2A 0.851 (19) C12—H12A 0.9300
C1—C2 1.376 (2) C13—C14 1.391 (2)
C1—C6 1.407 (2) C13—H13A 0.9300
C2—C3 1.383 (2) C15—H15A 0.9600
C2—H2C 0.9300 C15—H15B 0.9600
C3—C4 1.387 (2) C15—H15C 0.9600
C4—C5 1.384 (2)
C1—O1—H1A 109.3 (17) C6—C7—H7A 119.0
C3—O2—H3A 107.3 (17) O4—C8—N2 122.19 (14)
C5—O3—H2B 112.6 (14) O4—C8—C9 121.05 (14)
C14—O5—C15 120.00 (14) N2—C8—C9 116.75 (13)
C7—N1—N2 114.39 (13) C10—C9—C14 117.96 (14)
C8—N2—N1 122.66 (13) C10—C9—C8 116.26 (13)
C8—N2—H2A 120.7 (14) C14—C9—C8 125.78 (14)
N1—N2—H2A 116.6 (14) C11—C10—C9 122.09 (16)
O1—C1—C2 117.59 (14) C11—C10—H10A 119.0
O1—C1—C6 120.85 (14) C9—C10—H10A 119.0
C2—C1—C6 121.56 (14) C12—C11—C10 119.24 (16)
C1—C2—C3 119.07 (14) C12—C11—H11A 120.4
C1—C2—H2C 120.5 C10—C11—H11A 120.4
C3—C2—H2C 120.5 C11—C12—C13 120.80 (16)
O2—C3—C2 121.47 (14) C11—C12—H12A 119.6
O2—C3—C4 117.05 (14) C13—C12—H12A 119.6
C2—C3—C4 121.47 (14) C12—C13—C14 120.14 (16)
C5—C4—C3 118.93 (14) C12—C13—H13A 119.9
C5—C4—H4A 120.5 C14—C13—H13A 119.9
C3—C4—H4A 120.5 O5—C14—C13 122.37 (15)
O3—C5—C4 122.54 (14) O5—C14—C9 117.88 (14)
O3—C5—C6 116.16 (13) C13—C14—C9 119.75 (15)
C4—C5—C6 121.29 (13) O5—C15—H15A 109.5
C5—C6—C1 117.57 (13) O5—C15—H15B 109.5
C5—C6—C7 119.87 (13) H15A—C15—H15B 109.5
C1—C6—C7 122.55 (14) O5—C15—H15C 109.5
N1—C7—C6 122.06 (14) H15A—C15—H15C 109.5
N1—C7—H7A 119.0 H15B—C15—H15C 109.5
C7—N1—N2—C8 −175.22 (14) N1—N2—C8—O4 0.1 (2)
O1—C1—C2—C3 −179.90 (15) N1—N2—C8—C9 −179.32 (13)
C6—C1—C2—C3 0.4 (2) O4—C8—C9—C10 −3.9 (2)
C1—C2—C3—O2 −176.07 (15) N2—C8—C9—C10 175.56 (14)
C1—C2—C3—C4 2.6 (2) O4—C8—C9—C14 176.47 (15)
O2—C3—C4—C5 175.90 (14) N2—C8—C9—C14 −4.1 (2)
C2—C3—C4—C5 −2.8 (2) C14—C9—C10—C11 0.0 (2)
C3—C4—C5—O3 −179.30 (14) C8—C9—C10—C11 −179.71 (14)
C3—C4—C5—C6 0.1 (2) C9—C10—C11—C12 0.8 (2)
O3—C5—C6—C1 −177.87 (13) C10—C11—C12—C13 −0.3 (3)
C4—C5—C6—C1 2.7 (2) C11—C12—C13—C14 −0.9 (3)
O3—C5—C6—C7 3.1 (2) C15—O5—C14—C13 −2.9 (2)
C4—C5—C6—C7 −176.29 (13) C15—O5—C14—C9 177.58 (16)
O1—C1—C6—C5 177.32 (14) C12—C13—C14—O5 −177.81 (16)
C2—C1—C6—C5 −2.9 (2) C12—C13—C14—C9 1.7 (2)
O1—C1—C6—C7 −3.7 (2) C10—C9—C14—O5 178.31 (14)
C2—C1—C6—C7 176.02 (15) C8—C9—C14—O5 −2.0 (2)
N2—N1—C7—C6 −178.41 (13) C10—C9—C14—C13 −1.2 (2)
C5—C6—C7—N1 −178.30 (14) C8—C9—C14—C13 178.45 (14)
C1—C6—C7—N1 2.8 (2)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H1A···N1 0.84 (3) 1.88 (2) 2.6243 (18) 147 (2)
N2—H2A···O5 0.851 (19) 1.923 (19) 2.5981 (18) 135.4 (17)
O3—H2B···O4i 0.86 (2) 1.79 (2) 2.6452 (17) 175 (2)
O2—H3A···O1ii 0.93 (3) 1.92 (3) 2.8513 (18) 172 (3)

Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x+1/2, −y+1/2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: RZ5037).

References

  1. Almasirad, A., Hosseini, R., Jalalizadeh, H., Rahimi-Moghaddam, Z., Abaeian, N., Janafrooz, M., Abbaspour, M., Ziaee, V., Dalvandi, A. & Shafiee, A. (2006). Biol. Pharm. Bull. 29, 1180–1185. [DOI] [PubMed]
  2. Bruker (2000). SADABS, SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Khan, K. M., Shah, Z., Ahmad, V. U., Khan, M., Taha, M., Rahim, F., Jahan, H., Perveen, S. & Choudhary, M. I. (2011). Med. Chem. 7, 572–580. [DOI] [PubMed]
  4. Khan, K. M., Taha, M., Naz, F., Siddiqui, S., Ali, S., Rahim, F., Perveen, S. & Choudhary, M. I. (2012). Med. Chem. 8, 705–710. [DOI] [PubMed]
  5. Nardelli, M. (1995). J. Appl. Cryst. 28, 659.
  6. Rada, B. & Leto, T. (2008). Contrib. Microbiol. 15, 164–187. [DOI] [PMC free article] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813001748/rz5037sup1.cif

e-69-0o277-sup1.cif (19.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813001748/rz5037Isup2.hkl

e-69-0o277-Isup2.hkl (129.8KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813001748/rz5037Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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