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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Dec 12;69(Pt 1):o80. doi: 10.1107/S160053681205009X

14-Eth­oxy-4,6-dimethyl-9-phenyl-8,12-dioxa-4,6-diaza­tetra­cyclo­[8.8.0.02,7.013,18]octa­deca-2(7),13,15,17-tetra­ene-3,5,11-trione

G Jagadeesan a, D Kannan b, M Bakthadoss b, S Aravindhan a,*
PMCID: PMC3588261  PMID: 23476462

Abstract

In the title compound, C23H20N2O6, the fused pyrone and pyran rings each adopt a sofa conformation. The dihedral angle between the mean planes of the pyran and phenyl rings is 61.9 (1)°. In the crystal, mol­ecules are linked by two pairs of C—H⋯O hydrogen bonds, forming dimers. These dimers are linked via a third C—H⋯O hydrogen bond, forming a two-dimensional network parallel to (10-2).

Related literature  

For the biological activity of pyran­ocoumarin compounds, see: Kawaii et al. (2001); Hossain et al. (1996); Goel et al. (1997); Su et al. (2009); Xu et al. (2006). For anti-filarial activity studies, see: Casley-Smith et al. (1993). For their enzyme inhibitory activity, see: Pavao et al. (2002). For asymmetry parameters, see: Nardelli (1983).graphic file with name e-69-00o80-scheme1.jpg

Experimental  

Crystal data  

  • C23H20N2O6

  • M r = 420.41

  • Monoclinic, Inline graphic

  • a = 16.8362 (9) Å

  • b = 8.1692 (4) Å

  • c = 14.4400 (8) Å

  • β = 98.000 (3)°

  • V = 1966.72 (18) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 293 K

  • 0.25 × 0.20 × 0.20 mm

Data collection  

  • Bruker Kappa APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker 2004) T min = 0.979, T max = 0.983

  • 19858 measured reflections

  • 4247 independent reflections

  • 2943 reflections with I > 2σ(I)

  • R int = 0.039

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.046

  • wR(F 2) = 0.130

  • S = 1.04

  • 4247 reflections

  • 281 parameters

  • H-atom parameters constrained

  • Δρmax = 0.28 e Å−3

  • Δρmin = −0.19 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681205009X/su2537sup1.cif

e-69-00o80-sup1.cif (19.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681205009X/su2537Isup2.hkl

e-69-00o80-Isup2.hkl (203.9KB, hkl)

Supplementary material file. DOI: 10.1107/S160053681205009X/su2537Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C4—H4⋯O1i 0.93 2.59 3.514 (3) 172
C5—H5⋯O3i 0.93 2.45 3.361 (3) 165
C18—H18⋯O6ii 0.93 2.56 3.215 (3) 128

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

SA thanks the UGC, India, for financial support

supplementary crystallographic information

Comment

Coumarin derivatives show strong activity against cancer cell lines (Kawaii et al., 2001) and exhibit monoamine oxidase inhibitory activity (Hossain et al., 1996). Antiulcer activity of some naturally occurring pyranocoumarins has been reported (Goel et al., 1997). They also show anti-hepatitis B virus, anti-filarial (Casley-Smith et al., 1993) and cytotoxic activities (Su et al., 2009) and anti-TB activity (Xu et al., 2006). One natural source coumarin derivative, Chalepin, inhibits the glyceraldehyde-3-phosphate dehydrogenase of parasites (Protein Data Bank ID code 1 K3T) (Pavao et al., 2002). Herein, we report on the crystal structure of the title coumarin derivative.

In the title molecule (Fig. 1) the six-membered pyrone ring of the coumarin ring system [DS (C9) = 0.163 (1) Å and D2 (C9—C8) = 0.029 (1) Å] and the pyran ring [DS (C8) = 0.065 (1) Å and D2 (C8—C7) = 0.075 (1) Å] both adopt a sofa conformation defined by the above asymmetry parameters (Nardelli, 1983). The mean plane of the pyran ring and the phenyl ring are tilted with respect to one another with a dihedral angle of 61.9 (1) °. The torsion angles H9—C9—C8—H8 = 51 (2)° and H8—C8—C7—H7 = 175.12 (2)°, define the ring fusions involving the in the fused pyrone and pyran ring system of the coumarin moiety.

In the crystal, molecules are linked by two pairs of C-H···O hydrogen bonds to form dimers. These dimers are linked via a third C-H···O hydrogen bond forming a two-dimensional network parallel to (10-2) [Table 1 and Fig. 2].

Experimental

A mixture of 2-ethoxy-6-formylphenyl (2E)-3-phenylprop-2-enoate (0.296 g, 1 mmol) and N,N-dimethylbarbituric acid (0.156 g, 1 mmol) was placed in a round bottom flask and melted at 453 K for 1 h. After completion of the reaction, as indicated by TLC, the crude product was washed with 5 ml of an ethylacetate and hexane mixture (1:49 ratio) which successfully provided the pure product in 92% yield as a colourless solid. Diffraction quality crystals were obtained by slow evaporation of a solution in ethyl acetate.

Refinement

All the H atoms were positioned geometrically and constrained to ride on their parent atom: C–H = 0.93, 0.98 and 0.96 Å for aromatic, methine and methyl H atoms, respectively, with Uiso(H) = 1.5Ueq(C) for methyl H atoms and = 1.2Ueq(C) for other H atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title molecule, with atom lables. Displacement ellipsoids are drawn at the 30% probability level (H atoms have been omitted for clarity).

Fig. 2.

Fig. 2.

A view along the c axis of the crystal packing of the title compound. The C-H···O hydrogen bonds are shown as dashed lines. For the sake of clarity, H atoms not involved in these interactions have been omitted.

Crystal data

C23H20N2O6 F(000) = 880
Mr = 420.41 Dx = 1.420 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 8834 reflections
a = 16.8362 (9) Å θ = 2.1–31.2°
b = 8.1692 (4) Å µ = 0.10 mm1
c = 14.4400 (8) Å T = 293 K
β = 98.000 (3)° Block, colourless
V = 1966.72 (18) Å3 0.25 × 0.20 × 0.20 mm
Z = 4

Data collection

Bruker Kappa APEXII CCD diffractometer 4247 independent reflections
Radiation source: fine-focus sealed tube 2943 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.039
ω and φ scan θmax = 26.9°, θmin = 1.2°
Absorption correction: multi-scan (SADABS; Bruker 2004) h = −21→21
Tmin = 0.979, Tmax = 0.983 k = −10→10
19858 measured reflections l = −18→16

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046 H-atom parameters constrained
wR(F2) = 0.130 w = 1/[σ2(Fo2) + (0.0545P)2 + 0.6922P] where P = (Fo2 + 2Fc2)/3
S = 1.04 (Δ/σ)max < 0.001
4247 reflections Δρmax = 0.28 e Å3
281 parameters Δρmin = −0.19 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.0027 (7)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O4 0.16385 (8) 0.54434 (17) 0.34721 (9) 0.0456 (4)
O2 0.22837 (7) 0.36035 (17) 0.07300 (9) 0.0438 (3)
O3 0.12638 (8) 0.20829 (18) 0.09730 (10) 0.0513 (4)
O6 0.41821 (8) 0.2943 (2) 0.41399 (10) 0.0548 (4)
O5 0.29499 (10) 0.5286 (2) 0.64093 (10) 0.0632 (4)
N1 0.23397 (10) 0.5455 (2) 0.49074 (11) 0.0433 (4)
O1 0.29820 (9) 0.5214 (2) −0.04780 (10) 0.0547 (4)
N2 0.35919 (9) 0.4205 (2) 0.52645 (11) 0.0450 (4)
C13 0.36037 (11) 0.3696 (2) 0.43419 (13) 0.0412 (4)
C11 0.23195 (11) 0.4981 (2) 0.39956 (13) 0.0379 (4)
C14 0.32631 (10) 0.4522 (2) 0.20279 (13) 0.0369 (4)
C10 0.29172 (10) 0.4137 (2) 0.36840 (13) 0.0367 (4)
C16 0.33429 (11) 0.5327 (2) 0.04229 (14) 0.0427 (5)
C20 0.17880 (10) 0.2965 (2) 0.13077 (13) 0.0387 (4)
C15 0.29621 (10) 0.4502 (2) 0.10910 (13) 0.0378 (4)
C9 0.28330 (10) 0.3522 (2) 0.26942 (12) 0.0365 (4)
H9 0.3045 0.2404 0.2707 0.044*
C8 0.19371 (10) 0.3446 (2) 0.23246 (13) 0.0378 (4)
H8 0.1691 0.2618 0.2685 0.045*
C7 0.15484 (11) 0.5103 (2) 0.24763 (13) 0.0386 (4)
H7 0.1821 0.5959 0.2164 0.046*
C1 0.06624 (11) 0.5170 (2) 0.21317 (14) 0.0401 (4)
C12 0.29624 (12) 0.4995 (3) 0.55866 (14) 0.0460 (5)
C22 0.16917 (14) 0.6433 (3) 0.52058 (15) 0.0566 (6)
H22A 0.1808 0.6647 0.5864 0.085*
H22C 0.1196 0.5842 0.5079 0.085*
H22B 0.1647 0.7450 0.4870 0.085*
C17 0.40429 (12) 0.6166 (3) 0.07246 (15) 0.0515 (5)
H17 0.4313 0.6705 0.0294 0.062*
C19 0.39570 (11) 0.5407 (3) 0.23118 (15) 0.0478 (5)
H19 0.4163 0.5459 0.2943 0.057*
C18 0.43425 (12) 0.6208 (3) 0.16645 (16) 0.0555 (6)
H18 0.4811 0.6785 0.1863 0.067*
C6 0.04019 (13) 0.5835 (3) 0.12795 (15) 0.0547 (6)
H6 0.0773 0.6274 0.0928 0.066*
C21 0.33837 (15) 0.5946 (3) −0.11801 (15) 0.0631 (6)
H21A 0.3071 0.5791 −0.1782 0.095*
H21B 0.3900 0.5445 −0.1174 0.095*
H21C 0.3451 0.7096 −0.1056 0.095*
C23 0.42923 (13) 0.3828 (3) 0.59566 (16) 0.0614 (6)
H23A 0.4690 0.3278 0.5654 0.092*
H23B 0.4132 0.3133 0.6434 0.092*
H23C 0.4513 0.4825 0.6234 0.092*
C2 0.01032 (13) 0.4541 (3) 0.26413 (19) 0.0633 (7)
H2 0.0267 0.4096 0.3230 0.076*
C4 −0.09540 (13) 0.5224 (3) 0.14226 (19) 0.0647 (7)
H4 −0.1496 0.5229 0.1181 0.078*
C5 −0.04080 (15) 0.5868 (3) 0.09263 (18) 0.0679 (7)
H5 −0.0575 0.6337 0.0345 0.082*
C3 −0.07031 (14) 0.4565 (3) 0.2283 (2) 0.0738 (8)
H3 −0.1077 0.4129 0.2631 0.089*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O4 0.0445 (7) 0.0561 (8) 0.0357 (7) 0.0139 (6) 0.0034 (6) −0.0044 (6)
O2 0.0415 (7) 0.0573 (8) 0.0326 (7) −0.0085 (6) 0.0054 (6) −0.0022 (6)
O3 0.0488 (8) 0.0552 (8) 0.0481 (9) −0.0117 (7) 0.0006 (7) −0.0065 (7)
O6 0.0386 (7) 0.0730 (10) 0.0522 (9) 0.0106 (7) 0.0048 (6) 0.0051 (8)
O5 0.0691 (10) 0.0884 (12) 0.0320 (8) −0.0072 (9) 0.0067 (7) −0.0053 (8)
N1 0.0472 (9) 0.0523 (10) 0.0315 (9) 0.0016 (7) 0.0097 (7) −0.0019 (7)
O1 0.0533 (8) 0.0768 (10) 0.0347 (8) −0.0044 (7) 0.0084 (6) 0.0080 (7)
N2 0.0401 (9) 0.0587 (10) 0.0347 (9) −0.0063 (8) 0.0003 (7) 0.0046 (8)
C13 0.0382 (10) 0.0483 (11) 0.0371 (11) −0.0051 (9) 0.0049 (8) 0.0061 (9)
C11 0.0390 (9) 0.0414 (10) 0.0330 (10) −0.0023 (8) 0.0034 (8) 0.0026 (8)
C14 0.0316 (9) 0.0449 (10) 0.0352 (10) 0.0033 (8) 0.0079 (7) −0.0010 (8)
C10 0.0362 (9) 0.0423 (10) 0.0318 (10) −0.0009 (8) 0.0056 (7) 0.0034 (8)
C16 0.0411 (10) 0.0526 (11) 0.0354 (11) 0.0044 (9) 0.0088 (8) 0.0028 (9)
C20 0.0347 (9) 0.0411 (10) 0.0400 (11) 0.0022 (8) 0.0042 (8) −0.0019 (8)
C15 0.0325 (9) 0.0444 (10) 0.0371 (11) 0.0014 (8) 0.0071 (8) −0.0011 (8)
C9 0.0326 (9) 0.0421 (10) 0.0350 (10) 0.0026 (7) 0.0054 (7) 0.0005 (8)
C8 0.0351 (9) 0.0427 (10) 0.0363 (10) −0.0020 (8) 0.0068 (7) 0.0015 (8)
C7 0.0383 (9) 0.0443 (10) 0.0331 (10) 0.0024 (8) 0.0050 (8) 0.0021 (8)
C1 0.0372 (10) 0.0419 (10) 0.0414 (11) 0.0068 (8) 0.0059 (8) −0.0018 (8)
C12 0.0503 (11) 0.0537 (12) 0.0335 (11) −0.0109 (9) 0.0044 (9) 0.0027 (9)
C22 0.0682 (14) 0.0626 (14) 0.0412 (12) 0.0153 (11) 0.0158 (10) −0.0050 (10)
C17 0.0449 (11) 0.0635 (14) 0.0485 (13) −0.0078 (10) 0.0150 (9) 0.0090 (10)
C19 0.0376 (10) 0.0648 (13) 0.0407 (11) −0.0063 (9) 0.0049 (8) −0.0020 (10)
C18 0.0406 (11) 0.0730 (15) 0.0534 (14) −0.0165 (10) 0.0087 (9) −0.0006 (11)
C6 0.0477 (11) 0.0738 (15) 0.0412 (12) 0.0026 (11) 0.0020 (9) 0.0061 (11)
C21 0.0835 (17) 0.0693 (15) 0.0397 (13) −0.0016 (13) 0.0199 (12) 0.0094 (11)
C23 0.0477 (12) 0.0874 (17) 0.0450 (13) −0.0090 (12) −0.0078 (10) 0.0099 (12)
C2 0.0467 (12) 0.0761 (16) 0.0682 (16) 0.0043 (11) 0.0122 (11) 0.0215 (13)
C4 0.0387 (11) 0.0757 (16) 0.0765 (18) 0.0069 (11) −0.0033 (12) −0.0295 (14)
C5 0.0590 (14) 0.0907 (19) 0.0489 (14) 0.0113 (13) −0.0111 (11) −0.0079 (13)
C3 0.0445 (12) 0.0807 (18) 0.099 (2) −0.0016 (12) 0.0204 (14) 0.0022 (16)

Geometric parameters (Å, º)

O4—C11 1.337 (2) C7—C1 1.506 (2)
O4—C7 1.452 (2) C7—H7 0.9800
O2—C20 1.363 (2) C1—C6 1.361 (3)
O2—C15 1.396 (2) C1—C2 1.373 (3)
O3—C20 1.189 (2) C22—H22A 0.9600
O6—C13 1.221 (2) C22—H22C 0.9600
O5—C12 1.215 (2) C22—H22B 0.9600
N1—C11 1.368 (2) C17—C18 1.381 (3)
N1—C12 1.384 (3) C17—H17 0.9300
N1—C22 1.465 (3) C19—C18 1.376 (3)
O1—C16 1.360 (2) C19—H19 0.9300
O1—C21 1.426 (2) C18—H18 0.9300
N2—C12 1.376 (3) C6—C5 1.388 (3)
N2—C13 1.398 (3) C6—H6 0.9300
N2—C23 1.468 (2) C21—H21A 0.9600
C13—C10 1.436 (2) C21—H21B 0.9600
C11—C10 1.348 (3) C21—H21C 0.9600
C14—C15 1.377 (3) C23—H23A 0.9600
C14—C19 1.386 (3) C23—H23B 0.9600
C14—C9 1.520 (2) C23—H23C 0.9600
C10—C9 1.503 (3) C2—C3 1.384 (3)
C16—C17 1.381 (3) C2—H2 0.9300
C16—C15 1.403 (3) C4—C5 1.349 (4)
C20—C8 1.507 (3) C4—C3 1.366 (4)
C9—C8 1.530 (2) C4—H4 0.9300
C9—H9 0.9800 C5—H5 0.9300
C8—C7 1.533 (3) C3—H3 0.9300
C8—H8 0.9800
C11—O4—C7 117.97 (14) C6—C1—C2 118.38 (19)
C20—O2—C15 120.75 (14) C6—C1—C7 119.54 (18)
C11—N1—C12 121.34 (17) C2—C1—C7 122.06 (18)
C11—N1—C22 121.18 (16) O5—C12—N2 122.78 (19)
C12—N1—C22 117.46 (17) O5—C12—N1 121.7 (2)
C16—O1—C21 117.29 (17) N2—C12—N1 115.52 (17)
C12—N2—C13 125.11 (16) N1—C22—H22A 109.5
C12—N2—C23 116.86 (17) N1—C22—H22C 109.5
C13—N2—C23 118.00 (17) H22A—C22—H22C 109.5
O6—C13—N2 119.66 (17) N1—C22—H22B 109.5
O6—C13—C10 124.30 (18) H22A—C22—H22B 109.5
N2—C13—C10 116.04 (17) H22C—C22—H22B 109.5
O4—C11—C10 125.25 (17) C18—C17—C16 120.08 (19)
O4—C11—N1 111.64 (16) C18—C17—H17 120.0
C10—C11—N1 123.11 (17) C16—C17—H17 120.0
C15—C14—C19 118.45 (18) C18—C19—C14 120.33 (19)
C15—C14—C9 118.22 (16) C18—C19—H19 119.8
C19—C14—C9 123.30 (17) C14—C19—H19 119.8
C11—C10—C13 118.49 (17) C19—C18—C17 120.93 (19)
C11—C10—C9 120.83 (16) C19—C18—H18 119.5
C13—C10—C9 120.39 (16) C17—C18—H18 119.5
O1—C16—C17 125.70 (18) C1—C6—C5 121.1 (2)
O1—C16—C15 116.05 (17) C1—C6—H6 119.4
C17—C16—C15 118.25 (18) C5—C6—H6 119.4
O3—C20—O2 117.79 (17) O1—C21—H21A 109.5
O3—C20—C8 124.59 (18) O1—C21—H21B 109.5
O2—C20—C8 117.62 (15) H21A—C21—H21B 109.5
C14—C15—O2 122.90 (16) O1—C21—H21C 109.5
C14—C15—C16 121.94 (17) H21A—C21—H21C 109.5
O2—C15—C16 115.09 (16) H21B—C21—H21C 109.5
C10—C9—C14 115.59 (15) N2—C23—H23A 109.5
C10—C9—C8 107.66 (14) N2—C23—H23B 109.5
C14—C9—C8 109.55 (14) H23A—C23—H23B 109.5
C10—C9—H9 107.9 N2—C23—H23C 109.5
C14—C9—H9 107.9 H23A—C23—H23C 109.5
C8—C9—H9 107.9 H23B—C23—H23C 109.5
C20—C8—C9 111.91 (15) C1—C2—C3 120.3 (2)
C20—C8—C7 110.65 (15) C1—C2—H2 119.8
C9—C8—C7 109.51 (15) C3—C2—H2 119.8
C20—C8—H8 108.2 C5—C4—C3 119.3 (2)
C9—C8—H8 108.2 C5—C4—H4 120.3
C7—C8—H8 108.2 C3—C4—H4 120.3
O4—C7—C1 106.40 (15) C4—C5—C6 120.3 (2)
O4—C7—C8 108.85 (14) C4—C5—H5 119.9
C1—C7—C8 114.07 (15) C6—C5—H5 119.9
O4—C7—H7 109.1 C4—C3—C2 120.6 (2)
C1—C7—H7 109.1 C4—C3—H3 119.7
C8—C7—H7 109.1 C2—C3—H3 119.7

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C4—H4···O1i 0.93 2.59 3.514 (3) 172
C5—H5···O3i 0.93 2.45 3.361 (3) 165
C18—H18···O6ii 0.93 2.56 3.215 (3) 128

Symmetry codes: (i) −x, −y+1, −z; (ii) −x+1, y+1/2, −z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SU2537).

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681205009X/su2537sup1.cif

e-69-00o80-sup1.cif (19.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681205009X/su2537Isup2.hkl

e-69-00o80-Isup2.hkl (203.9KB, hkl)

Supplementary material file. DOI: 10.1107/S160053681205009X/su2537Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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