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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Dec 8;69(Pt 1):o62. doi: 10.1107/S1600536812049859

2-(1-Phenyl-1H-benzimidazol-2-yl)phenol

A Thiruvalluvar a,*, S Rosepriya a, K Jayamoorthy b, J Jayabharathi b, Sema Öztürk Yildirim c,d, R J Butcher c
PMCID: PMC3588362  PMID: 23476443

Abstract

In the title mol­ecule, C19H14N2O, the benzimidazole unit is close to being planar [maximum deviation = 0.0253 (11) Å] and forms dihedral angles of 68.98 (6) and 20.38 (7)° with the adjacent phenyl and benzene rings; the dihedral angle between the latter two planes is 64.30 (7)°. An intra­molecular O—H⋯N hydrogen bond generates an S(6) ring motif. In the crystal, mol­ecules are linked by C—H⋯N and C—H⋯O hydrogen bonds, and consolidated into a three-dimensional architecture by π–π stacking inter­actions, with a centroid–centroid distance of 3.8428 (12) Å.

Related literature  

For the range of pharmacological activities and toxicological properties of benzimidazole derivatives, see: Spasov et al. (1999). For closely related crystal structures, see: Jayamoorthy et al. (2012); Rosepriya et al. (2012). For hydrogen-bond motifs, see: Bernstein et al. (1995).graphic file with name e-69-00o62-scheme1.jpg

Experimental  

Crystal data  

  • C19H14N2O

  • M r = 286.32

  • Triclinic, Inline graphic

  • a = 8.1941 (6) Å

  • b = 9.5983 (14) Å

  • c = 10.3193 (18) Å

  • α = 64.637 (16)°

  • β = 80.356 (10)°

  • γ = 83.610 (9)°

  • V = 722.3 (2) Å3

  • Z = 2

  • Cu Kα radiation

  • μ = 0.66 mm−1

  • T = 123 K

  • 0.76 × 0.46 × 0.32 mm

Data collection  

  • Agilent Xcalibur Ruby Gemini diffractometer

  • Absorption correction: analytical [CrysAlis PRO (Agilent, 2012), using a multi-faceted crystal model (Clark & Reid, 1995)] T min = 0.731, T max = 0.811

  • 4335 measured reflections

  • 2826 independent reflections

  • 2420 reflections with I > 2σ(I)

  • R int = 0.076

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.059

  • wR(F 2) = 0.171

  • S = 1.04

  • 2826 reflections

  • 203 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.32 e Å−3

  • Δρmin = −0.31 e Å−3

Data collection: CrysAlis PRO (Agilent, 2012); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS86 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and PLATON (Spek, 2009); software used to prepare material for publication: PLATON.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812049859/tk5179sup1.cif

e-69-00o62-sup1.cif (19.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812049859/tk5179Isup2.hkl

e-69-00o62-Isup2.hkl (135.9KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812049859/tk5179Isup3.cdx

Supplementary material file. DOI: 10.1107/S1600536812049859/tk5179Isup4.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O26—H26⋯N3 0.97 (3) 1.70 (3) 2.583 (2) 150 (3)
C14—H14⋯N3i 0.95 2.60 3.456 (3) 151
C16—H16⋯O26ii 0.95 2.49 3.388 (2) 157

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

KJ thanks the DST (No. SRS1IC-73/2010) for a fellowship. JJ thanks the DST (No. SRSIC-73/2010), the UGC [F. No. 36–21/2008 (SR)] and the DRDO (NRB-213/MAT/10–11) for providing funds for this research. RJB acknowledges the NSF–MRI program (grant No. CHE-0619278) for funds to purchase an X-ray diffractometer.

supplementary crystallographic information

Comment

Spasov et al. (1999) have reviewed the wide range of pharmacological activities and toxicological properties of benzimidazole derivatives. Since our research group is working in organic light emitting devices, we are interested to use the title compound as ligand for synthesizing IrIII complexes. Further, we are interested to use the title compound as a ligand to study excited state intramolecular proton transfer (ESIPT) processes. Jayamoorthy et al. (2012) and Rosepriya et al. (2012) have reported closely related crystal structures of benzimidazole derivatives.

In the title molecule, C19H14N2O (Fig. 1), the benzimidazole unit is almost planar [maximum deviation = 0.0253 (11) Å for C2]. The dihedral angles between the planes of the benzimidazole and the phenyl ring at N1 and the benzene ring at C2 are 68.98 (6) and 20.38 (7)°, respectively. The dihedral angle between the planes of the adjacent phenyl and benzene rings is 64.30 (7)°. The molecular conformation is stabilized by an intramolecular O26—H26···N3 hydrogen bond, which generates an S(6) ring motif (Bernstein et al., 1995). In the crystal (Fig. 2), molecules are linked by C14—H14···N3 and C16—H16···O26 hydrogen bonds (Table 1). Further, π—π stacking interactions between symmetry-related imidazole and benzene rings [Cg1—Cg4iii = Cg4—Cg1iii = 3.8428 (12) Å, symmetry code (iii): 2 - x, - y, - z where Cg1 is the centroid of the imidazole ring (N1/C2/N3/C9/C8) and Cg4 is the centroid of the benzene ring defined by atoms C21—C26, respectively] (Fig. 3) are noted.

Experimental

To N-phenyl-o-phenylenediamine (3.128 g, 17 mmol) in ethanol (10 ml), 2-hydroxybenzaldehyde (1.8 ml, 17 mmol) and ammonium acetate (4 g) were added over about 1 h while maintaining the temperature at 353 K. The reaction mixture was refluxed for the appropriate time and the completion of reaction was monitored by TLC. The reaction mixture extracted with dichloromethane. The solid that separated was purified by column chromatography using petroleum ether (60–80 °C) as the eluent. Yield: 2.43 g (50%). The title compound was dissolved in petroleum ether and chloroform (9:1) mixture and allowed to slow evaporate for two days to obtain crystals suitable for X-ray diffraction studies.

Refinement

The O-bound H atom was located in a difference Fourier map and refined freely; O26—H26 = 0.97 (3) Å. The remaining H atoms were positioned geometrically and allowed to ride on their parent atoms, with C—H = 0.95 Å, and with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, with displacement ellipsoids drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius. The dashed line indicates the intramolecular O—H···N hydrogen bond.

Fig. 2.

Fig. 2.

The packing of the title compound, viewed approximately down the c axis. Dashed lines indicate hydrogen bonds. H atoms not involved in hydrogen bonding have been omitted.

Fig. 3.

Fig. 3.

Part of the crystal structure of compound, showing the formation of π—π stacking interactions. Symmetry code: 2 - x, - y, - z

Crystal data

C19H14N2O Z = 2
Mr = 286.32 F(000) = 300
Triclinic, P1 Dx = 1.316 Mg m3
Hall symbol: -P 1 Melting point: 387 K
a = 8.1941 (6) Å Cu Kα radiation, λ = 1.54184 Å
b = 9.5983 (14) Å Cell parameters from 772 reflections
c = 10.3193 (18) Å θ = 4.8–75.4°
α = 64.637 (16)° µ = 0.66 mm1
β = 80.356 (10)° T = 123 K
γ = 83.610 (9)° Block, colourless
V = 722.3 (2) Å3 0.76 × 0.46 × 0.32 mm

Data collection

Agilent Xcalibur Ruby Gemini diffractometer 2826 independent reflections
Radiation source: Enhance (Cu) X-ray Source 2420 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.076
Detector resolution: 10.5081 pixels mm-1 θmax = 75.8°, θmin = 5.5°
ω scans h = −10→10
Absorption correction: analytical [CrysAlis PRO (Agilent, 2012), using a multi-faceted crystal model (Clark & Reid, 1995)] k = −9→12
Tmin = 0.731, Tmax = 0.811 l = −12→12
4335 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.171 H atoms treated by a mixture of independent and constrained refinement
S = 1.04 w = 1/[σ2(Fo2) + (0.1182P)2 + 0.1646P] where P = (Fo2 + 2Fc2)/3
2826 reflections (Δ/σ)max = 0.001
203 parameters Δρmax = 0.32 e Å3
0 restraints Δρmin = −0.31 e Å3

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O26 0.61570 (15) −0.11111 (15) −0.08352 (15) 0.0336 (4)
N1 0.78361 (16) 0.03924 (16) 0.19436 (15) 0.0249 (4)
N3 0.70983 (17) −0.15812 (16) 0.15919 (16) 0.0262 (4)
C2 0.75812 (18) −0.01378 (18) 0.09515 (18) 0.0238 (4)
C4 0.6537 (2) −0.3401 (2) 0.4242 (2) 0.0331 (5)
C5 0.6508 (2) −0.3488 (2) 0.5613 (2) 0.0384 (5)
C6 0.6940 (3) −0.2238 (2) 0.5834 (2) 0.0386 (6)
C7 0.7442 (2) −0.0876 (2) 0.4680 (2) 0.0340 (5)
C8 0.7465 (2) −0.07982 (18) 0.33084 (19) 0.0272 (5)
C9 0.70108 (19) −0.20226 (19) 0.30605 (19) 0.0269 (5)
C11 0.8035 (2) 0.19445 (18) 0.17495 (18) 0.0250 (5)
C12 0.9424 (2) 0.2276 (2) 0.2142 (2) 0.0301 (5)
C13 0.9554 (2) 0.3752 (2) 0.2042 (2) 0.0344 (5)
C14 0.8320 (2) 0.4876 (2) 0.1542 (2) 0.0331 (5)
C15 0.6936 (2) 0.4524 (2) 0.1156 (2) 0.0345 (5)
C16 0.6775 (2) 0.30484 (19) 0.1263 (2) 0.0306 (5)
C21 0.77729 (18) 0.07290 (18) −0.06192 (18) 0.0245 (5)
C22 0.8703 (2) 0.2056 (2) −0.13605 (19) 0.0286 (5)
C23 0.8821 (2) 0.2863 (2) −0.2849 (2) 0.0343 (5)
C24 0.7977 (2) 0.2376 (2) −0.3632 (2) 0.0359 (5)
C25 0.7070 (2) 0.1065 (2) −0.2933 (2) 0.0330 (5)
C26 0.69972 (19) 0.0214 (2) −0.14465 (19) 0.0272 (5)
H4 0.62439 −0.42523 0.41012 0.0397*
H5 0.61885 −0.44136 0.64270 0.0460*
H6 0.68856 −0.23287 0.67934 0.0463*
H7 0.77567 −0.00349 0.48246 0.0408*
H12 1.02792 0.15069 0.24756 0.0361*
H13 1.04993 0.39890 0.23189 0.0413*
H14 0.84218 0.58863 0.14649 0.0397*
H15 0.60863 0.52966 0.08129 0.0414*
H16 0.58178 0.28037 0.10080 0.0367*
H22 0.92633 0.24072 −0.08287 0.0343*
H23 0.94752 0.37448 −0.33327 0.0411*
H24 0.80249 0.29466 −0.46494 0.0431*
H25 0.64902 0.07421 −0.34740 0.0395*
H26 0.629 (4) −0.158 (3) 0.018 (3) 0.057 (7)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O26 0.0296 (6) 0.0337 (7) 0.0436 (8) −0.0070 (5) −0.0042 (5) −0.0208 (6)
N1 0.0230 (7) 0.0213 (7) 0.0301 (7) −0.0004 (5) −0.0039 (5) −0.0105 (6)
N3 0.0218 (6) 0.0218 (7) 0.0342 (8) −0.0001 (5) −0.0030 (5) −0.0113 (6)
C2 0.0175 (7) 0.0225 (7) 0.0316 (8) 0.0013 (5) −0.0026 (6) −0.0123 (6)
C4 0.0269 (8) 0.0230 (8) 0.0422 (10) −0.0008 (6) −0.0021 (7) −0.0078 (7)
C5 0.0349 (9) 0.0295 (9) 0.0374 (10) −0.0012 (7) 0.0001 (8) −0.0032 (8)
C6 0.0390 (10) 0.0397 (10) 0.0310 (9) 0.0025 (8) −0.0034 (8) −0.0106 (8)
C7 0.0360 (9) 0.0297 (9) 0.0360 (9) 0.0011 (7) −0.0065 (7) −0.0135 (8)
C8 0.0222 (7) 0.0231 (8) 0.0335 (9) 0.0006 (6) −0.0020 (6) −0.0103 (7)
C9 0.0209 (7) 0.0236 (8) 0.0342 (9) 0.0019 (6) −0.0034 (6) −0.0111 (7)
C11 0.0252 (8) 0.0201 (8) 0.0287 (8) −0.0022 (6) −0.0007 (6) −0.0100 (6)
C12 0.0244 (8) 0.0262 (8) 0.0401 (10) 0.0016 (6) −0.0068 (7) −0.0140 (7)
C13 0.0265 (8) 0.0341 (10) 0.0474 (10) −0.0045 (7) −0.0055 (7) −0.0206 (8)
C14 0.0331 (9) 0.0237 (8) 0.0422 (10) −0.0041 (7) 0.0008 (7) −0.0149 (7)
C15 0.0289 (9) 0.0243 (8) 0.0481 (11) 0.0034 (6) −0.0053 (7) −0.0141 (8)
C16 0.0234 (8) 0.0251 (8) 0.0433 (10) −0.0007 (6) −0.0068 (7) −0.0135 (7)
C21 0.0170 (7) 0.0243 (8) 0.0322 (9) 0.0023 (6) −0.0018 (6) −0.0130 (7)
C22 0.0208 (7) 0.0293 (9) 0.0347 (9) −0.0009 (6) −0.0013 (6) −0.0134 (7)
C23 0.0285 (9) 0.0318 (9) 0.0357 (10) −0.0009 (7) 0.0019 (7) −0.0100 (8)
C24 0.0316 (9) 0.0406 (10) 0.0300 (9) 0.0077 (7) −0.0027 (7) −0.0122 (8)
C25 0.0259 (8) 0.0399 (10) 0.0368 (10) 0.0059 (7) −0.0054 (7) −0.0208 (8)
C26 0.0189 (7) 0.0295 (8) 0.0352 (9) 0.0029 (6) −0.0018 (6) −0.0170 (7)

Geometric parameters (Å, º)

O26—C26 1.361 (2) C21—C26 1.411 (3)
O26—H26 0.97 (3) C21—C22 1.405 (3)
N1—C2 1.376 (2) C22—C23 1.384 (3)
N1—C8 1.392 (2) C23—C24 1.390 (3)
N1—C11 1.440 (2) C24—C25 1.381 (3)
N3—C9 1.379 (2) C25—C26 1.389 (3)
N3—C2 1.328 (2) C4—H4 0.9500
C2—C21 1.460 (2) C5—H5 0.9500
C4—C9 1.401 (3) C6—H6 0.9500
C4—C5 1.377 (3) C7—H7 0.9500
C5—C6 1.405 (3) C12—H12 0.9500
C6—C7 1.385 (3) C13—H13 0.9500
C7—C8 1.382 (3) C14—H14 0.9500
C8—C9 1.404 (3) C15—H15 0.9500
C11—C12 1.381 (2) C16—H16 0.9500
C11—C16 1.384 (3) C22—H22 0.9500
C12—C13 1.391 (3) C23—H23 0.9500
C13—C14 1.381 (3) C24—H24 0.9500
C14—C15 1.382 (2) C25—H25 0.9500
C15—C16 1.392 (3)
C26—O26—H26 106.6 (19) C23—C24—C25 120.11 (17)
C2—N1—C8 106.88 (15) C24—C25—C26 120.62 (17)
C8—N1—C11 121.93 (15) O26—C26—C25 117.70 (16)
C2—N1—C11 129.56 (15) C21—C26—C25 120.26 (17)
C2—N3—C9 106.46 (15) O26—C26—C21 122.04 (16)
N1—C2—C21 126.44 (16) C5—C4—H4 121.00
N3—C2—C21 121.90 (16) C9—C4—H4 121.00
N1—C2—N3 111.66 (15) C4—C5—H5 119.00
C5—C4—C9 118.13 (18) C6—C5—H5 119.00
C4—C5—C6 121.46 (18) C5—C6—H6 119.00
C5—C6—C7 121.27 (18) C7—C6—H6 119.00
C6—C7—C8 116.87 (18) C6—C7—H7 122.00
N1—C8—C7 131.52 (18) C8—C7—H7 122.00
N1—C8—C9 105.57 (15) C11—C12—H12 120.00
C7—C8—C9 122.88 (17) C13—C12—H12 120.00
N3—C9—C8 109.43 (16) C12—C13—H13 120.00
C4—C9—C8 119.38 (17) C14—C13—H13 120.00
N3—C9—C4 131.18 (18) C13—C14—H14 120.00
N1—C11—C16 119.08 (15) C15—C14—H14 120.00
C12—C11—C16 121.35 (18) C14—C15—H15 120.00
N1—C11—C12 119.43 (16) C16—C15—H15 120.00
C11—C12—C13 119.07 (17) C11—C16—H16 121.00
C12—C13—C14 120.50 (17) C15—C16—H16 121.00
C13—C14—C15 119.69 (19) C21—C22—H22 119.00
C14—C15—C16 120.66 (17) C23—C22—H22 119.00
C11—C16—C15 118.73 (16) C22—C23—H23 120.00
C2—C21—C26 118.85 (16) C24—C23—H23 120.00
C22—C21—C26 117.79 (16) C23—C24—H24 120.00
C2—C21—C22 123.35 (16) C25—C24—H24 120.00
C21—C22—C23 121.43 (17) C24—C25—H25 120.00
C22—C23—C24 119.65 (18) C26—C25—H25 120.00
C8—N1—C2—N3 −0.83 (19) C6—C7—C8—N1 177.26 (19)
C8—N1—C2—C21 178.31 (15) C6—C7—C8—C9 −0.1 (3)
C11—N1—C2—N3 −166.19 (16) N1—C8—C9—N3 −0.26 (19)
C11—N1—C2—C21 13.0 (3) N1—C8—C9—C4 −179.06 (15)
C2—N1—C8—C7 −177.06 (18) C7—C8—C9—N3 177.69 (16)
C2—N1—C8—C9 0.64 (18) C7—C8—C9—C4 −1.1 (3)
C11—N1—C8—C7 −10.3 (3) N1—C11—C12—C13 −175.74 (16)
C11—N1—C8—C9 167.36 (15) C16—C11—C12—C13 −0.1 (3)
C2—N1—C11—C12 −124.86 (19) N1—C11—C16—C15 176.42 (16)
C2—N1—C11—C16 59.4 (2) C12—C11—C16—C15 0.8 (3)
C8—N1—C11—C12 71.7 (2) C11—C12—C13—C14 −0.7 (3)
C8—N1—C11—C16 −104.04 (19) C12—C13—C14—C15 0.8 (3)
C9—N3—C2—N1 0.66 (19) C13—C14—C15—C16 −0.2 (3)
C9—N3—C2—C21 −178.53 (15) C14—C15—C16—C11 −0.6 (3)
C2—N3—C9—C4 178.37 (18) C2—C21—C22—C23 −178.51 (17)
C2—N3—C9—C8 −0.23 (19) C26—C21—C22—C23 1.8 (3)
N1—C2—C21—C22 19.6 (3) C2—C21—C26—O26 −3.8 (3)
N1—C2—C21—C26 −160.78 (16) C2—C21—C26—C25 176.02 (16)
N3—C2—C21—C22 −161.38 (17) C22—C21—C26—O26 175.86 (16)
N3—C2—C21—C26 18.3 (2) C22—C21—C26—C25 −4.3 (3)
C9—C4—C5—C6 −0.1 (3) C21—C22—C23—C24 1.4 (3)
C5—C4—C9—N3 −177.34 (17) C22—C23—C24—C25 −2.1 (3)
C5—C4—C9—C8 1.2 (3) C23—C24—C25—C26 −0.4 (3)
C4—C5—C6—C7 −1.2 (3) C24—C25—C26—O26 −176.50 (17)
C5—C6—C7—C8 1.2 (3) C24—C25—C26—C21 3.7 (3)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O26—H26···N3 0.97 (3) 1.70 (3) 2.583 (2) 150 (3)
C14—H14···N3i 0.95 2.60 3.456 (3) 151
C16—H16···O26ii 0.95 2.49 3.388 (2) 157

Symmetry codes: (i) x, y+1, z; (ii) −x+1, −y, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK5179).

References

  1. Agilent (2012). CrysAlis PRO Agilent Technologies, Yarnton, England.
  2. Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573.
  3. Clark, R. C. & Reid, J. S. (1995). Acta Cryst. A51, 887–897.
  4. Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
  5. Jayamoorthy, K., Rosepriya, S., Thiruvalluvar, A., Jayabharathi, J. & Butcher, R. J. (2012). Acta Cryst. E68, o2708. [DOI] [PMC free article] [PubMed]
  6. Rosepriya, S., Thiruvalluvar, A., Jayamoorthy, K., Jayabharathi, J., Öztürk Yildirim, S. & Butcher, R. J. (2012). Acta Cryst. E68, o3283. [DOI] [PMC free article] [PubMed]
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  8. Spasov, A. A., Yozhitsa, I. N., Bugaeva, L. I. & Anisimova, V. A. (1999). Pharm. Chem. J. 33, 232–243.
  9. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812049859/tk5179sup1.cif

e-69-00o62-sup1.cif (19.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812049859/tk5179Isup2.hkl

e-69-00o62-Isup2.hkl (135.9KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812049859/tk5179Isup3.cdx

Supplementary material file. DOI: 10.1107/S1600536812049859/tk5179Isup4.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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