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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2013 Feb 16;69(Pt 3):o385–o386. doi: 10.1107/S1600536813004194

5-(4-Fluoro­phen­yl)-3-(4-methyl­phen­yl)-4,5-dihydro-1H-pyrazole-1-carbothio­amide

Bakr F Abdel-Wahab a,, Hanan A Mohamed a, Rizk E Khidre b, Seik Weng Ng c,d, Edward R T Tiekink c,*
PMCID: PMC3588501  PMID: 23476571

Abstract

The central pyrazole ring in the title compound, C17H16FN3S, adopts an envelope conformation with the methine C atom bearing the 4-fluoro­phenyl substituent as the flap atom. Whereas the tolyl ring is slightly twisted out of the least-squares plane through the pyrazole ring [dihedral angle = 13.51 (11)°], the fluoro­benzene ring is almost perpendicular [dihedral angle = 80.21 (11)°]. The thio­amide group is almost coplanar with the N—N bond of the ring [N—N—C—N torsion angle = 1.2 (3)°] and the amine group forms an intra­molecular hydrogen bond with a ring N atom. In the crystal, supra­molecular double layers in the bc plane are formed via N—H⋯S, N—H⋯F and C—H⋯F inter­actions.

Related literature  

For the biological activity of pyrazolin-1-yl­thia­zoles, see: Abdel-Wahab et al. (2009, 2012); Chimenti et al. (2010). For related structures, see: Nonthason et al. (2011); Chantra­promma et al. (2012).graphic file with name e-69-0o385-scheme1.jpg

Experimental  

Crystal data  

  • C17H16FN3S

  • M r = 313.39

  • Monoclinic, Inline graphic

  • a = 14.4154 (10) Å

  • b = 11.3197 (9) Å

  • c = 9.5575 (8) Å

  • β = 103.991 (8)°

  • V = 1513.3 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.22 mm−1

  • T = 295 K

  • 0.30 × 0.20 × 0.10 mm

Data collection  

  • Agilent SuperNova Dual diffractometer with an Atlas detector

  • Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) T min = 0.772, T max = 1.000

  • 9303 measured reflections

  • 3500 independent reflections

  • 2370 reflections with I > 2σ(I)

  • R int = 0.038

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.047

  • wR(F 2) = 0.122

  • S = 1.04

  • 3500 reflections

  • 200 parameters

  • H-atom parameters constrained

  • Δρmax = 0.18 e Å−3

  • Δρmin = −0.26 e Å−3

Data collection: CrysAlis PRO (Agilent, 2011); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813004194/hg5291sup1.cif

e-69-0o385-sup1.cif (19.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004194/hg5291Isup2.hkl

e-69-0o385-Isup2.hkl (171.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813004194/hg5291Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H31⋯N2 0.88 2.23 2.611 (3) 106
N3—H31⋯F1i 0.88 2.41 3.255 (2) 162
N3—H32⋯S1ii 0.88 2.83 3.538 (2) 138
C16—H16B⋯F1iii 0.96 2.55 3.478 (3) 163

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

We thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM.C/HIR-MOHE/SC/12).

supplementary crystallographic information

Comment

The title compound (I) was investigated crystallographically in connection with the established biological activities exhibited by pyrazolin-1-ylthiazoles (Abdel-Wahab et al., 2012; Abdel-Wahab et al., 2009; Chimenti et al., 2010).

The central pyrazolyl ring in (I), Fig. 1, adopts an envelope conformation with the methine-C7 atom being the flap atom. The tolyl ring is slightly twisted out of the least-squares plane through the pyrazolyl ring, forming a dihedral angle of 13.51 (11)°. By contrast, the fluorobenzene ring is almost perpendicular to the five-membered ring [dihedral angle = 80.21 (11)°]. Finally, the thioamide residue is co-planar with the N2—N1—C17—N3 torsion angle being 1.2 (3)°; the amine group is orientated towards the ring-N2 atom, forming a hydrogen bond, Table 1. Similar conformations have been observed in related structures bearing two six-membered rings (Nonthason et al., 2011; Chantrapromma et al., 2012).

The F atom proves to be pivotal in providing stability to the crystal structure of (I). Thus, in addition to forming an intramolecular N—H···N2 hydrogen bond, the amine-H31 atom forms a hydrogen bond to the F1 atom, Table 1. The second amine-H32 atom hydrogen bonds to a thione so that a supramolecular chain along the c axis ensues, Fig. 2. Chains stack along the b axis to form a row and centrosymmetrically related rows inter-digitate along the a axis allowing for the formation methylene-C16—H···F1 interactions and, therefore, double layers, Fig. 2.

Experimental

A mixture of 5-(4-fluorophenyl)-3-p-tolyl-4,5-dihydro-1H-pyrazole-1-carbothioamide (0.31 g, 0.001 M) and 2-bromo-1-(4-chlorophenyl)ethanone (0.23 g, 0.001 M) in anhydrous ethanol (30 ml) was heated under reflux for about 4 h. The resultant solid was filtered and dried. Re-crystallization was by slow evaporation of DMF solution of (I) which yielded colourless crystals in 61% yield. M.pt: 513–514 K.

Refinement

Nitrogen- and carbon-bound H-atoms were placed in calculated positions (N—H = 0.88 Å, and C—H 0.93 to 0.98 Å) and were included in the refinement in the riding model approximation, with Uiso(H) = 1.2–1.5Uequiv(N,C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I) showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level.

Fig. 2.

Fig. 2.

A view of the supramolecular chain along the c axis in (I) mediated by N—H···S and N—H···F hydrogen bonds, shown as orange and blue dashed lines, respectively.

Fig. 3.

Fig. 3.

A view of the crystal packing in projection down the c axis. The N—H···S, N—H···F and C—H···F interactions are shown as orange, blue and pink dashed lines, respectively.

Crystal data

C17H16FN3S F(000) = 656
Mr = 313.39 Dx = 1.376 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 2000 reflections
a = 14.4154 (10) Å θ = 2.9–27.5°
b = 11.3197 (9) Å µ = 0.22 mm1
c = 9.5575 (8) Å T = 295 K
β = 103.991 (8)° Prism, colourless
V = 1513.3 (2) Å3 0.30 × 0.20 × 0.10 mm
Z = 4

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector 3500 independent reflections
Radiation source: SuperNova (Mo) X-ray Source 2370 reflections with I > 2σ(I)
Mirror monochromator Rint = 0.038
Detector resolution: 10.4041 pixels mm-1 θmax = 27.6°, θmin = 2.9°
ω scan h = −18→17
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) k = −10→14
Tmin = 0.772, Tmax = 1.000 l = −12→12
9303 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122 H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.0448P)2 + 0.2973P] where P = (Fo2 + 2Fc2)/3
3500 reflections (Δ/σ)max < 0.001
200 parameters Δρmax = 0.18 e Å3
0 restraints Δρmin = −0.26 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.48991 (4) 0.33372 (5) 0.33938 (6) 0.04739 (19)
F1 0.76993 (11) 0.35963 (12) −0.10409 (14) 0.0659 (4)
N1 0.63664 (12) 0.46879 (14) 0.46526 (17) 0.0384 (4)
N2 0.71143 (11) 0.50005 (15) 0.58117 (17) 0.0391 (4)
N3 0.60198 (14) 0.32075 (15) 0.60342 (19) 0.0491 (5)
H31 0.6497 0.3462 0.6727 0.059*
H32 0.5684 0.2591 0.6181 0.059*
C1 0.73573 (16) 0.40770 (19) 0.0050 (2) 0.0445 (5)
C2 0.77815 (16) 0.3771 (2) 0.1434 (2) 0.0483 (6)
H2 0.8306 0.3266 0.1637 0.058*
C3 0.74165 (14) 0.42262 (19) 0.2528 (2) 0.0435 (5)
H3 0.7697 0.4024 0.3479 0.052*
C4 0.66378 (13) 0.49796 (17) 0.2226 (2) 0.0341 (4)
C5 0.62418 (15) 0.52828 (18) 0.0812 (2) 0.0416 (5)
H5 0.5728 0.5804 0.0602 0.050*
C6 0.65938 (16) 0.48273 (19) −0.0307 (2) 0.0469 (5)
H6 0.6320 0.5025 −0.1262 0.056*
C7 0.62560 (14) 0.55094 (17) 0.3424 (2) 0.0376 (5)
H7 0.5584 0.5736 0.3066 0.045*
C8 0.68480 (15) 0.65640 (18) 0.4168 (2) 0.0406 (5)
H8A 0.7267 0.6865 0.3594 0.049*
H8B 0.6439 0.7198 0.4347 0.049*
C9 0.74100 (14) 0.60325 (18) 0.5553 (2) 0.0378 (5)
C10 0.82031 (14) 0.65987 (18) 0.6583 (2) 0.0381 (5)
C11 0.87678 (15) 0.5981 (2) 0.7726 (2) 0.0486 (6)
H11 0.8658 0.5179 0.7826 0.058*
C12 0.94914 (17) 0.6537 (2) 0.8718 (3) 0.0526 (6)
H12 0.9867 0.6101 0.9470 0.063*
C13 0.96669 (15) 0.7734 (2) 0.8614 (2) 0.0470 (5)
C14 0.91224 (16) 0.8339 (2) 0.7453 (3) 0.0519 (6)
H14 0.9243 0.9136 0.7342 0.062*
C15 0.83985 (15) 0.7787 (2) 0.6447 (2) 0.0470 (5)
H15 0.8041 0.8216 0.5673 0.056*
C16 1.04181 (18) 0.8345 (2) 0.9752 (3) 0.0673 (8)
H16A 1.0751 0.8910 0.9303 0.101*
H16B 1.0864 0.7772 1.0264 0.101*
H16C 1.0119 0.8744 1.0414 0.101*
C17 0.58067 (14) 0.37547 (17) 0.4763 (2) 0.0365 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0422 (3) 0.0508 (3) 0.0468 (3) −0.0061 (3) 0.0063 (2) −0.0054 (3)
F1 0.0882 (10) 0.0730 (9) 0.0427 (8) 0.0155 (8) 0.0279 (7) −0.0051 (7)
N1 0.0401 (9) 0.0438 (10) 0.0305 (8) −0.0056 (8) 0.0071 (7) −0.0003 (7)
N2 0.0387 (9) 0.0462 (10) 0.0315 (9) −0.0038 (8) 0.0066 (7) −0.0025 (8)
N3 0.0545 (11) 0.0474 (10) 0.0437 (10) −0.0086 (9) 0.0088 (9) 0.0077 (8)
C1 0.0549 (13) 0.0448 (12) 0.0370 (11) −0.0018 (11) 0.0170 (10) −0.0035 (10)
C2 0.0448 (12) 0.0556 (13) 0.0442 (12) 0.0135 (11) 0.0099 (10) 0.0022 (11)
C3 0.0438 (11) 0.0547 (13) 0.0296 (10) 0.0095 (11) 0.0043 (9) 0.0018 (10)
C4 0.0342 (10) 0.0357 (10) 0.0315 (10) −0.0021 (9) 0.0062 (8) 0.0008 (8)
C5 0.0433 (11) 0.0431 (11) 0.0346 (11) 0.0075 (10) 0.0020 (9) 0.0040 (9)
C6 0.0594 (14) 0.0487 (12) 0.0283 (10) 0.0028 (11) 0.0023 (10) 0.0040 (9)
C7 0.0360 (10) 0.0428 (11) 0.0325 (10) 0.0030 (9) 0.0056 (8) 0.0044 (9)
C8 0.0455 (11) 0.0403 (11) 0.0360 (11) 0.0006 (10) 0.0100 (9) −0.0010 (9)
C9 0.0370 (10) 0.0422 (11) 0.0359 (10) 0.0003 (10) 0.0124 (9) −0.0027 (9)
C10 0.0362 (10) 0.0427 (11) 0.0372 (11) −0.0007 (9) 0.0124 (9) −0.0038 (9)
C11 0.0509 (13) 0.0447 (12) 0.0469 (13) −0.0063 (11) 0.0052 (11) −0.0013 (10)
C12 0.0521 (13) 0.0542 (14) 0.0449 (13) 0.0011 (12) −0.0010 (11) −0.0012 (11)
C13 0.0385 (11) 0.0510 (13) 0.0509 (13) 0.0004 (10) 0.0098 (10) −0.0134 (11)
C14 0.0434 (12) 0.0413 (12) 0.0695 (16) −0.0045 (11) 0.0106 (12) −0.0052 (11)
C15 0.0423 (12) 0.0465 (12) 0.0513 (13) 0.0009 (10) 0.0093 (10) 0.0026 (11)
C16 0.0527 (14) 0.0653 (16) 0.0745 (18) −0.0040 (13) −0.0025 (13) −0.0231 (14)
C17 0.0384 (10) 0.0378 (11) 0.0365 (11) 0.0033 (9) 0.0151 (9) −0.0034 (9)

Geometric parameters (Å, º)

S1—C17 1.679 (2) C7—C8 1.538 (3)
F1—C1 1.369 (2) C7—H7 0.9800
N1—C17 1.349 (2) C8—C9 1.501 (3)
N1—N2 1.392 (2) C8—H8A 0.9700
N1—C7 1.476 (2) C8—H8B 0.9700
N2—C9 1.288 (3) C9—C10 1.464 (3)
N3—C17 1.332 (2) C10—C11 1.383 (3)
N3—H31 0.8800 C10—C15 1.386 (3)
N3—H32 0.8800 C11—C12 1.381 (3)
C1—C2 1.361 (3) C11—H11 0.9300
C1—C6 1.367 (3) C12—C13 1.386 (3)
C2—C3 1.379 (3) C12—H12 0.9300
C2—H2 0.9300 C13—C14 1.377 (3)
C3—C4 1.383 (3) C13—C16 1.505 (3)
C3—H3 0.9300 C14—C15 1.385 (3)
C4—C5 1.377 (3) C14—H14 0.9300
C4—C7 1.509 (3) C15—H15 0.9300
C5—C6 1.389 (3) C16—H16A 0.9600
C5—H5 0.9300 C16—H16B 0.9600
C6—H6 0.9300 C16—H16C 0.9600
C17—N1—N2 119.99 (16) C9—C8—H8B 111.3
C17—N1—C7 127.16 (16) C7—C8—H8B 111.3
N2—N1—C7 112.76 (15) H8A—C8—H8B 109.2
C9—N2—N1 107.83 (16) N2—C9—C10 120.57 (18)
C17—N3—H31 120.0 N2—C9—C8 113.58 (17)
C17—N3—H32 120.0 C10—C9—C8 125.81 (18)
H31—N3—H32 120.0 C11—C10—C15 118.05 (19)
C2—C1—F1 118.6 (2) C11—C10—C9 121.63 (19)
C2—C1—C6 123.1 (2) C15—C10—C9 120.31 (19)
F1—C1—C6 118.25 (19) C12—C11—C10 121.0 (2)
C1—C2—C3 118.5 (2) C12—C11—H11 119.5
C1—C2—H2 120.7 C10—C11—H11 119.5
C3—C2—H2 120.7 C11—C12—C13 121.1 (2)
C2—C3—C4 120.74 (19) C11—C12—H12 119.4
C2—C3—H3 119.6 C13—C12—H12 119.4
C4—C3—H3 119.6 C14—C13—C12 117.8 (2)
C5—C4—C3 118.76 (18) C14—C13—C16 121.6 (2)
C5—C4—C7 120.31 (17) C12—C13—C16 120.6 (2)
C3—C4—C7 120.86 (17) C13—C14—C15 121.5 (2)
C4—C5—C6 121.39 (19) C13—C14—H14 119.3
C4—C5—H5 119.3 C15—C14—H14 119.3
C6—C5—H5 119.3 C14—C15—C10 120.6 (2)
C1—C6—C5 117.44 (19) C14—C15—H15 119.7
C1—C6—H6 121.3 C10—C15—H15 119.7
C5—C6—H6 121.3 C13—C16—H16A 109.5
N1—C7—C4 111.36 (16) C13—C16—H16B 109.5
N1—C7—C8 100.38 (15) H16A—C16—H16B 109.5
C4—C7—C8 113.31 (16) C13—C16—H16C 109.5
N1—C7—H7 110.5 H16A—C16—H16C 109.5
C4—C7—H7 110.5 H16B—C16—H16C 109.5
C8—C7—H7 110.5 N3—C17—N1 115.16 (18)
C9—C8—C7 102.56 (16) N3—C17—S1 122.98 (16)
C9—C8—H8A 111.3 N1—C17—S1 121.85 (15)
C7—C8—H8A 111.3
C17—N1—N2—C9 −167.33 (17) N1—N2—C9—C10 −179.64 (16)
C7—N1—N2—C9 9.5 (2) N1—N2—C9—C8 2.3 (2)
F1—C1—C2—C3 −177.94 (19) C7—C8—C9—N2 −12.1 (2)
C6—C1—C2—C3 0.9 (3) C7—C8—C9—C10 169.92 (18)
C1—C2—C3—C4 −0.2 (3) N2—C9—C10—C11 11.6 (3)
C2—C3—C4—C5 −1.0 (3) C8—C9—C10—C11 −170.55 (19)
C2—C3—C4—C7 −178.1 (2) N2—C9—C10—C15 −167.37 (19)
C3—C4—C5—C6 1.5 (3) C8—C9—C10—C15 10.5 (3)
C7—C4—C5—C6 178.58 (19) C15—C10—C11—C12 1.4 (3)
C2—C1—C6—C5 −0.4 (3) C9—C10—C11—C12 −177.6 (2)
F1—C1—C6—C5 178.42 (19) C10—C11—C12—C13 0.9 (4)
C4—C5—C6—C1 −0.8 (3) C11—C12—C13—C14 −2.7 (4)
C17—N1—C7—C4 −79.3 (2) C11—C12—C13—C16 176.3 (2)
N2—N1—C7—C4 104.12 (18) C12—C13—C14—C15 2.3 (3)
C17—N1—C7—C8 160.42 (18) C16—C13—C14—C15 −176.7 (2)
N2—N1—C7—C8 −16.1 (2) C13—C14—C15—C10 −0.1 (3)
C5—C4—C7—N1 149.56 (18) C11—C10—C15—C14 −1.8 (3)
C3—C4—C7—N1 −33.4 (2) C9—C10—C15—C14 177.28 (19)
C5—C4—C7—C8 −98.2 (2) N2—N1—C17—N3 1.2 (3)
C3—C4—C7—C8 78.8 (2) C7—N1—C17—N3 −175.12 (18)
N1—C7—C8—C9 15.56 (19) N2—N1—C17—S1 −179.70 (14)
C4—C7—C8—C9 −103.26 (18) C7—N1—C17—S1 4.0 (3)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N3—H31···N2 0.88 2.23 2.611 (3) 106
N3—H31···F1i 0.88 2.41 3.255 (2) 162
N3—H32···S1ii 0.88 2.83 3.538 (2) 138
C16—H16B···F1iii 0.96 2.55 3.478 (3) 163

Symmetry codes: (i) x, y, z+1; (ii) x, −y+1/2, z+1/2; (iii) −x+2, −y+1, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG5291).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813004194/hg5291sup1.cif

e-69-0o385-sup1.cif (19.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004194/hg5291Isup2.hkl

e-69-0o385-Isup2.hkl (171.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536813004194/hg5291Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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